Wall clock time and date at job start Tue Mar 31 2020 04:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40173 * 119.27057 * 179.67481 * 3 2 1 5 5 N 1.31255 * 120.35709 * 0.63972 * 4 3 2 6 6 C 1.33986 * 120.88015 * 359.66841 * 5 4 3 7 7 N 1.32499 * 132.34596 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 179.97438 * 7 6 5 9 9 C 1.48131 * 125.32259 * 179.97438 * 8 7 6 10 10 O 1.21519 * 119.99807 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00103 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47040 * 180.02562 * 12 11 9 14 14 C 1.53782 * 113.61636 * 274.13634 * 13 12 11 15 15 C 1.53951 * 87.02282 * 220.04917 * 14 13 12 16 16 N 1.46496 * 113.53824 * 270.81209 * 15 14 13 17 17 C 1.36946 * 119.99797 * 252.49234 * 16 15 14 18 18 H 1.07990 * 119.99746 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99586 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00410 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47026 * 59.99995 * 21 19 17 23 23 H 1.48498 * 109.47162 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46660 * 299.99769 * 21 19 17 25 25 C 1.53776 * 87.10992 * 25.36203 * 15 14 13 26 26 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 27 27 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 28 28 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 31 31 H 1.07998 * 120.36884 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.82303 * 180.30601 * 4 3 2 33 33 H 0.97006 * 119.99693 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.46859 * 300.00565 * 12 11 9 35 35 H 1.08997 * 109.46558 * 60.00176 * 12 11 9 36 36 H 1.09002 * 112.85044 * 45.33544 * 13 12 11 37 37 H 1.09000 * 113.61476 * 334.57339 * 14 13 12 38 38 H 1.09005 * 113.61325 * 105.46945 * 14 13 12 39 39 H 1.08997 * 113.74093 * 139.94121 * 15 14 13 40 40 H 0.97002 * 120.00171 * 72.49805 * 16 15 14 41 41 H 0.97002 * 120.00577 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.61612 * 220.08950 * 25 15 14 43 43 H 1.09010 * 113.61687 * 89.18605 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0069 5 7 4.2360 -0.0068 0.0007 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0121 8 6 2.9091 -3.2412 -0.0163 9 6 2.9637 -4.7215 -0.0244 10 8 1.9344 -5.3674 -0.0272 11 7 4.1550 -5.3519 -0.0286 12 6 4.2090 -6.8159 -0.0361 13 6 5.6692 -7.2723 -0.0390 14 6 6.2869 -7.3520 -1.4451 15 6 6.9797 -8.6458 -0.9800 16 7 8.2891 -8.4191 -0.3635 17 6 9.4313 -8.7639 -1.0359 18 1 9.3666 -9.2024 -2.0206 19 6 10.6721 -8.5486 -0.4519 20 7 10.7509 -8.0137 0.7481 21 14 12.2301 -9.0182 -1.3693 22 1 12.2990 -8.2637 -2.6465 23 1 13.4139 -8.6894 -0.5351 24 1 12.2160 -10.4753 -1.6551 25 6 5.8377 -8.7989 0.0384 26 7 1.8048 -2.5182 -0.0121 27 7 2.1978 -1.1735 -0.0058 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 1.6693 2.1124 -0.0004 32 1 4.1535 2.0649 0.0120 33 1 4.9766 -4.8362 -0.0260 34 1 3.7096 -7.2023 0.8524 35 1 3.7081 -7.1933 -0.9275 36 1 6.2842 -6.7283 0.6779 37 1 5.5535 -7.5094 -2.2359 38 1 6.9795 -6.5393 -1.6644 39 1 6.9980 -9.4301 -1.7366 40 1 8.3472 -8.0250 0.5209 41 1 11.6179 -7.8630 1.1560 42 1 6.1680 -9.1528 1.0150 43 1 4.9810 -9.3527 -0.3461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091353427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:36 Heat of formation + Delta-G solvation = 137.164254 kcal Electronic energy + Delta-G solvation = -26543.938423 eV Core-core repulsion = 22628.066948 eV Total energy + Delta-G solvation = -3915.871475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.39287 -40.09632 -39.07061 -38.33379 -35.78269 -34.78686 -33.21757 -32.31923 -31.41670 -30.17804 -29.11667 -27.90592 -25.30102 -25.00380 -24.65999 -23.59428 -22.45383 -21.62077 -20.61894 -19.14949 -18.66881 -18.27670 -17.50021 -17.24809 -17.10089 -16.15134 -15.95942 -15.46291 -14.89565 -14.75163 -14.37303 -14.27419 -14.05779 -13.95536 -13.63322 -13.42997 -13.14351 -13.07740 -13.03786 -12.84596 -12.27658 -12.00578 -11.88361 -11.38631 -11.01920 -10.81130 -10.74999 -10.61615 -10.51586 -10.42523 -10.23791 -10.16791 -9.86862 -9.65304 -9.48083 -9.26119 -9.08821 -8.84612 -6.96327 -5.76728 -3.05826 -0.18540 0.12124 1.22013 1.43016 2.54777 2.72112 2.88257 3.14619 3.45574 3.49616 3.49842 3.50902 3.67143 4.08030 4.26010 4.51805 4.59163 4.63793 4.67214 4.72102 5.06268 5.07173 5.10922 5.25075 5.33472 5.48698 5.50383 5.55054 5.63795 5.68054 5.71665 5.85383 5.96732 6.10841 6.24100 6.29785 6.41083 6.61424 6.80177 6.87651 6.92061 7.08603 7.16853 7.47358 7.72124 7.94356 8.42341 9.52870 10.10667 10.44781 11.45577 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002165 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.025733 B =12931.942203 C =14323.593864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.204 3.796 3 C -0.227 4.227 4 C 0.213 3.787 5 N -0.451 5.451 6 C 0.447 3.553 7 N -0.496 5.496 8 C 0.243 3.757 9 C 0.607 3.393 10 O -0.513 6.513 11 N -0.693 5.693 12 C 0.131 3.869 13 C -0.121 4.121 14 C -0.170 4.170 15 C 0.168 3.832 16 N -0.705 5.705 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.146 4.146 26 N -0.270 5.270 27 N -0.328 5.328 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.176 0.824 32 H 0.194 0.806 33 H 0.416 0.584 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.069 0.931 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.533 21.622 -0.711 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 C -0.252 4.252 4 C 0.027 3.973 5 N -0.166 5.166 6 C 0.086 3.914 7 N -0.230 5.230 8 C -0.041 4.041 9 C 0.387 3.613 10 O -0.386 6.386 11 N -0.344 5.344 12 C 0.008 3.992 13 C -0.140 4.140 14 C -0.211 4.211 15 C 0.055 3.945 16 N -0.344 5.344 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.186 4.186 26 N -0.103 5.103 27 N -0.110 5.110 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.194 0.806 32 H 0.211 0.789 33 H 0.253 0.747 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.499 20.146 -0.816 30.211 hybrid contribution 0.521 0.760 -0.117 0.929 sum -21.978 20.906 -0.933 30.348 Atomic orbital electron populations 1.21107 0.86114 1.05766 1.05150 1.20971 0.96840 0.81848 0.91776 1.21866 0.95776 0.97942 1.09599 1.23681 0.91758 0.95845 0.86065 1.68114 1.36101 0.94999 1.17395 1.22737 0.78275 0.93686 0.96676 1.70883 1.28111 0.96426 1.27573 1.24279 0.85917 0.96903 0.96979 1.16315 0.84822 0.81852 0.78350 1.90845 1.33590 1.64811 1.49307 1.45849 1.07807 1.08712 1.72077 1.21669 0.98142 0.77045 1.02332 1.22741 0.93089 0.97951 1.00176 1.23938 0.99894 1.02885 0.94355 1.21082 0.85347 0.94230 0.93804 1.42169 0.99234 1.73584 1.19414 1.19240 0.84536 1.34148 0.99458 0.91052 1.24765 0.97668 1.01633 0.96814 1.69649 1.23957 1.49347 1.15053 0.86244 0.82950 0.78142 0.78702 1.21223 1.21705 1.21238 1.23445 0.99908 0.93682 1.01570 1.78871 1.19334 0.82954 1.29178 1.49061 1.09225 1.06336 1.46330 0.88362 0.88987 0.88204 0.80639 0.78897 0.74708 0.91111 0.90882 0.88578 0.91358 0.91314 0.91910 0.78073 0.93393 0.91213 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 10.13 36.01 0.36 -0.07 16 2 C 0.20 1.33 6.86 -81.58 -0.56 0.77 16 3 C -0.23 -0.74 9.72 -39.77 -0.39 -1.13 16 4 C 0.21 1.05 11.27 -17.07 -0.19 0.85 16 5 N -0.45 -4.81 10.48 -13.79 -0.14 -4.96 16 6 C 0.45 5.94 8.99 -323.04 -2.90 3.03 16 7 N -0.50 -7.62 10.89 -12.23 -0.13 -7.75 16 8 C 0.24 3.74 7.92 -156.78 -1.24 2.49 16 9 C 0.61 9.54 7.84 -12.20 -0.10 9.45 16 10 O -0.51 -9.17 17.07 5.35 0.09 -9.08 16 11 N -0.69 -9.87 5.55 -61.16 -0.34 -10.21 16 12 C 0.13 1.81 5.50 -4.05 -0.02 1.78 16 13 C -0.12 -1.86 3.62 -89.81 -0.33 -2.18 16 14 C -0.17 -2.90 7.44 -25.83 -0.19 -3.09 16 15 C 0.17 3.30 4.57 -67.03 -0.31 3.00 16 16 N -0.71 -17.59 5.31 -52.56 -0.28 -17.86 16 17 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 21 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 26 N -0.27 -3.88 12.67 32.02 0.41 -3.48 16 27 N -0.33 -3.79 3.91 -10.07 -0.04 -3.83 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.03 8.09 -51.93 -0.42 -0.39 16 31 H 0.18 -0.22 8.06 -52.49 -0.42 -0.65 16 32 H 0.19 0.06 8.06 -52.49 -0.42 -0.36 16 33 H 0.42 5.81 8.14 -40.82 -0.33 5.48 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 36 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.39 10.16 7.90 -40.82 -0.32 9.84 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -36.84 373.75 -11.07 -47.90 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.66 Total: 8.62 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -6.30 Total: 5.01 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: 0.19 Total: -75.53 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.84 -11.07 -47.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091353427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.068 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds