Wall clock time and date at job start Tue Mar 31 2020 04:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40173 * 119.27057 * 179.67481 * 3 2 1 5 5 N 1.31255 * 120.35709 * 0.63972 * 4 3 2 6 6 C 1.33986 * 120.88015 * 359.66841 * 5 4 3 7 7 N 1.32499 * 132.34596 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 179.97438 * 7 6 5 9 9 C 1.48131 * 125.32259 * 179.97438 * 8 7 6 10 10 O 1.21519 * 119.99807 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00103 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47040 * 180.02562 * 12 11 9 14 14 C 1.53782 * 113.61636 * 274.13634 * 13 12 11 15 15 C 1.53951 * 87.02282 * 220.04917 * 14 13 12 16 16 N 1.46496 * 113.53824 * 270.81209 * 15 14 13 17 17 C 1.36946 * 119.99797 * 252.49234 * 16 15 14 18 18 H 1.07990 * 119.99746 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99586 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00410 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47026 * 59.99995 * 21 19 17 23 23 H 1.48498 * 109.47162 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46660 * 299.99769 * 21 19 17 25 25 C 1.53776 * 87.10992 * 25.36203 * 15 14 13 26 26 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 27 27 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 28 28 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 31 31 H 1.07998 * 120.36884 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.82303 * 180.30601 * 4 3 2 33 33 H 0.97006 * 119.99693 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.46859 * 300.00565 * 12 11 9 35 35 H 1.08997 * 109.46558 * 60.00176 * 12 11 9 36 36 H 1.09002 * 112.85044 * 45.33544 * 13 12 11 37 37 H 1.09000 * 113.61476 * 334.57339 * 14 13 12 38 38 H 1.09005 * 113.61325 * 105.46945 * 14 13 12 39 39 H 1.08997 * 113.74093 * 139.94121 * 15 14 13 40 40 H 0.97002 * 120.00171 * 72.49805 * 16 15 14 41 41 H 0.97002 * 120.00577 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.61612 * 220.08950 * 25 15 14 43 43 H 1.09010 * 113.61687 * 89.18605 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0069 5 7 4.2360 -0.0068 0.0007 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0121 8 6 2.9091 -3.2412 -0.0163 9 6 2.9637 -4.7215 -0.0244 10 8 1.9344 -5.3674 -0.0272 11 7 4.1550 -5.3519 -0.0286 12 6 4.2090 -6.8159 -0.0361 13 6 5.6692 -7.2723 -0.0390 14 6 6.2869 -7.3520 -1.4451 15 6 6.9797 -8.6458 -0.9800 16 7 8.2891 -8.4191 -0.3635 17 6 9.4313 -8.7639 -1.0359 18 1 9.3666 -9.2024 -2.0206 19 6 10.6721 -8.5486 -0.4519 20 7 10.7509 -8.0137 0.7481 21 14 12.2301 -9.0182 -1.3693 22 1 12.2990 -8.2637 -2.6465 23 1 13.4139 -8.6894 -0.5351 24 1 12.2160 -10.4753 -1.6551 25 6 5.8377 -8.7989 0.0384 26 7 1.8048 -2.5182 -0.0121 27 7 2.1978 -1.1735 -0.0058 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 1.6693 2.1124 -0.0004 32 1 4.1535 2.0649 0.0120 33 1 4.9766 -4.8362 -0.0260 34 1 3.7096 -7.2023 0.8524 35 1 3.7081 -7.1933 -0.9275 36 1 6.2842 -6.7283 0.6779 37 1 5.5535 -7.5094 -2.2359 38 1 6.9795 -6.5393 -1.6644 39 1 6.9980 -9.4301 -1.7366 40 1 8.3472 -8.0250 0.5209 41 1 11.6179 -7.8630 1.1560 42 1 6.1680 -9.1528 1.0150 43 1 4.9810 -9.3527 -0.3461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091353427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:35 Heat of formation + Delta-G solvation = 111.655209 kcal Electronic energy + Delta-G solvation = -26545.044578 eV Core-core repulsion = 22628.066948 eV Total energy + Delta-G solvation = -3916.977631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.18778 -41.18652 -40.11036 -39.53866 -36.42302 -36.14963 -35.04883 -33.06682 -32.25411 -32.05729 -29.53147 -29.24310 -26.47352 -26.40919 -25.46292 -25.26490 -23.34087 -22.88905 -21.69116 -20.10242 -19.68586 -19.43958 -19.16627 -18.28987 -18.07959 -17.19196 -16.72419 -16.57869 -16.55713 -15.84838 -15.77554 -15.21711 -15.08013 -14.89627 -14.64249 -14.49574 -14.40755 -13.94895 -13.84412 -13.74253 -13.35653 -13.28457 -12.93789 -12.92098 -12.68483 -12.61941 -12.19666 -12.08645 -11.90126 -11.67993 -11.48534 -11.37536 -11.12618 -11.01080 -10.94750 -10.79845 -10.28001 -9.96801 -8.98877 -7.93984 -5.22450 -0.79069 -0.54937 0.50304 0.51584 1.47805 1.50956 1.56917 1.58440 1.85777 2.11730 2.27583 2.56742 2.80370 3.17383 3.27245 3.38225 3.71573 3.76812 3.79827 3.87593 4.07468 4.13392 4.25595 4.32170 4.40103 4.41866 4.48301 4.54508 4.63690 4.70620 4.71837 4.94166 4.95026 4.99051 5.03667 5.11019 5.15469 5.22044 5.35503 5.42542 5.53413 5.67005 6.04172 6.24987 6.29355 6.53289 6.78034 7.34104 8.11960 8.33848 9.29124 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002165 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.025733 B =12931.942203 C =14323.593864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.169 3.831 3 C -0.187 4.187 4 C 0.223 3.777 5 N -0.493 5.493 6 C 0.428 3.572 7 N -0.534 5.534 8 C 0.224 3.776 9 C 0.610 3.390 10 O -0.541 6.541 11 N -0.687 5.687 12 C 0.138 3.862 13 C -0.106 4.106 14 C -0.157 4.157 15 C 0.144 3.856 16 N -0.720 5.720 17 C -0.243 4.243 18 H 0.077 0.923 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.129 4.129 26 N -0.293 5.293 27 N -0.329 5.329 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.142 0.858 31 H 0.237 0.763 32 H 0.245 0.755 33 H 0.417 0.583 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.060 0.940 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.254 24.367 -1.587 34.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.053 3.947 3 C -0.210 4.210 4 C 0.041 3.959 5 N -0.211 5.211 6 C 0.068 3.932 7 N -0.270 5.270 8 C -0.059 4.059 9 C 0.391 3.609 10 O -0.416 6.416 11 N -0.338 5.338 12 C 0.016 3.984 13 C -0.125 4.125 14 C -0.197 4.197 15 C 0.034 3.966 16 N -0.358 5.358 17 C -0.375 4.375 18 H 0.095 0.905 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.203 1.203 25 C -0.168 4.168 26 N -0.129 5.129 27 N -0.111 5.111 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.253 0.747 32 H 0.261 0.739 33 H 0.254 0.746 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.274 22.937 -1.728 33.441 hybrid contribution 0.941 0.199 0.122 0.970 sum -23.332 23.136 -1.605 32.897 Atomic orbital electron populations 1.21230 0.83993 1.06536 1.05888 1.21983 0.98667 0.81089 0.92928 1.22637 0.95079 0.98791 1.04542 1.24761 0.93222 0.95621 0.82308 1.68232 1.37179 0.95546 1.20094 1.22913 0.79171 0.93962 0.97151 1.70717 1.28956 0.97871 1.29418 1.24022 0.86508 0.96644 0.98775 1.16389 0.84565 0.82278 0.77698 1.90806 1.34350 1.65582 1.50908 1.45822 1.07577 1.08897 1.71489 1.21607 0.96780 0.76828 1.03201 1.22525 0.93788 0.97613 0.98563 1.23787 0.99636 1.00234 0.96085 1.21420 0.84435 0.95548 0.95160 1.42319 1.00619 1.73826 1.19081 1.19649 0.85677 1.32601 0.99565 0.90490 1.25583 1.00804 1.02708 0.97857 1.69811 1.24080 1.51401 1.16710 0.85201 0.78931 0.78134 0.77434 1.20508 1.22269 1.20284 1.23333 0.99147 0.94276 1.00049 1.78673 1.19599 0.84640 1.29979 1.49120 1.09228 1.06420 1.46291 0.87508 0.91540 0.84032 0.74662 0.73888 0.74638 0.90326 0.89880 0.90256 0.88742 0.93768 0.91844 0.79415 0.94051 0.92121 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.13 71.24 0.72 0.19 16 2 C 0.17 1.81 6.86 41.29 0.28 2.09 16 3 C -0.19 -0.32 9.72 22.15 0.22 -0.10 16 4 C 0.22 1.34 11.27 85.25 0.96 2.30 16 5 N -0.49 -10.03 10.48 -197.54 -2.07 -12.10 16 6 C 0.43 11.63 8.99 261.57 2.35 13.98 16 7 N -0.53 -17.43 10.89 -192.61 -2.10 -19.53 16 8 C 0.22 7.33 7.92 137.40 1.09 8.42 16 9 C 0.61 20.09 7.84 86.87 0.68 20.77 16 10 O -0.54 -20.01 17.07 -3.77 -0.06 -20.07 16 11 N -0.69 -20.21 5.55 -465.71 -2.59 -22.79 16 12 C 0.14 3.75 5.50 86.38 0.47 4.22 16 13 C -0.11 -3.24 3.62 -10.27 -0.04 -3.28 16 14 C -0.16 -5.31 7.44 31.18 0.23 -5.08 16 15 C 0.14 5.66 4.57 45.57 0.21 5.87 16 16 N -0.72 -36.69 5.31 -320.19 -1.70 -38.39 16 17 C -0.24 -13.68 9.97 84.03 0.84 -12.85 16 18 H 0.08 4.14 7.83 -2.92 -0.02 4.12 16 19 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 20 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 21 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 C -0.13 -4.00 7.39 31.12 0.23 -3.77 16 26 N -0.29 -8.90 12.67 -52.60 -0.67 -9.56 16 27 N -0.33 -7.62 3.91 -185.76 -0.73 -8.35 16 28 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.14 -0.61 8.09 -2.38 -0.02 -0.63 16 31 H 0.24 -2.46 8.06 -2.91 -0.02 -2.48 16 32 H 0.25 -1.23 8.06 -2.91 -0.02 -1.26 16 33 H 0.42 12.29 8.14 -92.70 -0.76 11.54 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 2.14 7.88 -2.39 -0.02 2.12 16 36 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.09 2.72 7.92 -2.39 -0.02 2.70 16 38 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.06 2.46 8.10 -2.39 -0.02 2.44 16 40 H 0.37 20.44 7.90 -92.71 -0.73 19.71 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.11 2.76 8.10 -2.38 -0.02 2.74 16 Total: -1.00 -87.04 373.75 0.69 -86.35 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.42 Total: 26.80 kcal Atomic # 6 Polarization: 20.01 SS G_CDS: 8.71 Total: 28.73 kcal Atomic # 7 Polarization: -161.13 SS G_CDS: -9.56 Total: -170.69 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -87.04 0.69 -86.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091353427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.005 kcal (2) G-P(sol) polarization free energy of solvation -87.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds