Wall clock time and date at job start Tue Mar 31 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35535 * 125.67571 * 2 1 4 4 C 1.35451 * 108.87001 * 179.97438 * 3 2 1 5 5 C 1.39832 * 107.86499 * 0.02562 * 4 3 2 6 6 C 1.37650 * 125.67701 * 179.97438 * 2 1 3 7 7 C 1.46671 * 126.23495 * 0.05016 * 6 2 1 8 8 O 1.21697 * 119.99958 * 354.25885 * 7 6 2 9 9 N 1.34774 * 120.00275 * 174.25354 * 7 6 2 10 10 C 1.46497 * 120.00310 * 185.12061 * 9 7 6 11 11 C 1.50703 * 109.47214 * 180.02562 * 10 9 7 12 12 C 1.35345 * 126.75681 * 94.71202 * 11 10 9 13 13 N 1.35304 * 106.17967 * 179.85382 * 12 11 10 14 14 C 1.46501 * 125.87063 * 180.18887 * 13 12 11 15 15 C 1.53939 * 113.74181 * 14.03455 * 14 13 12 16 16 N 1.47817 * 86.03481 * 222.08605 * 15 14 13 17 17 C 1.36938 * 134.45531 * 204.64482 * 16 15 14 18 18 H 1.08000 * 120.00028 * 179.86445 * 17 16 15 19 19 C 1.38816 * 120.00225 * 359.86083 * 17 16 15 20 20 N 1.31618 * 119.99630 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47317 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47100 * 120.00418 * 21 19 17 24 24 H 1.48506 * 109.47368 * 240.00492 * 21 19 17 25 25 C 1.47576 * 91.05173 * 24.54654 * 16 15 14 26 26 N 1.28714 * 108.26291 * 0.41445 * 13 12 11 27 27 N 1.28637 * 110.17706 * 359.73723 * 26 13 12 28 28 H 1.08995 * 109.47635 * 273.94452 * 1 2 3 29 29 H 1.09006 * 109.47051 * 33.94201 * 1 2 3 30 30 H 1.08996 * 109.47105 * 153.94176 * 1 2 3 31 31 H 1.08004 * 125.56543 * 359.93872 * 3 2 1 32 32 H 1.08000 * 126.06724 * 179.97438 * 4 3 2 33 33 H 1.08003 * 126.46101 * 180.25647 * 5 4 3 34 34 H 0.96999 * 119.99830 * 5.12946 * 9 7 6 35 35 H 1.09004 * 109.46983 * 300.00265 * 10 9 7 36 36 H 1.09001 * 109.47012 * 60.00353 * 10 9 7 37 37 H 1.08006 * 126.90965 * 0.02562 * 12 11 10 38 38 H 1.09003 * 112.94357 * 145.63080 * 14 13 12 39 39 H 1.08995 * 113.77059 * 336.34829 * 15 14 13 40 40 H 1.08998 * 113.77276 * 107.75288 * 15 14 13 41 41 H 0.97001 * 120.00130 * 179.97438 * 20 19 17 42 42 H 1.09000 * 113.77275 * 221.14676 * 25 16 15 43 43 H 1.09007 * 113.87084 * 89.76605 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6887 0.0004 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0001 8 8 0.6266 -2.7652 0.1047 9 7 2.7072 -3.5136 -0.1162 10 6 2.2454 -4.8992 -0.2295 11 6 3.4349 -5.8172 -0.3459 12 6 4.0492 -6.4786 0.6626 13 7 5.0579 -7.1791 0.0947 14 6 5.9997 -8.0524 0.7994 15 6 5.5655 -8.4026 2.2342 16 7 6.9803 -8.1890 2.6049 17 6 7.7844 -8.6375 3.6186 18 1 8.8174 -8.3261 3.6664 19 6 7.2717 -9.4923 4.5847 20 7 6.0129 -9.8721 4.5262 21 14 8.3687 -10.1047 5.9670 22 1 9.7311 -9.5359 5.8067 23 1 7.8049 -9.6773 7.2727 24 1 8.4422 -11.5872 5.9210 25 6 7.1789 -7.3008 1.4432 26 7 5.0508 -6.9427 -1.1705 27 7 4.0948 -6.1341 -1.4655 28 1 -0.3634 0.0707 1.0251 29 1 -0.3633 0.8526 -0.5738 30 1 -0.3633 -0.9232 -0.4514 31 1 1.9081 2.1237 -0.0009 32 1 4.4132 1.3612 0.0003 33 1 4.4583 -1.3144 0.0046 34 1 3.6569 -3.3166 -0.1247 35 1 1.6682 -5.1635 0.6566 36 1 1.6187 -5.0020 -1.1154 37 1 3.7853 -6.4546 1.7096 38 1 6.3009 -8.9174 0.2085 39 1 4.8814 -7.6778 2.6755 40 1 5.2299 -9.4329 2.3525 41 1 5.6546 -10.4697 5.2010 42 1 8.1291 -7.4528 0.9312 43 1 6.9705 -6.2510 1.6499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094276492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:12 Heat of formation + Delta-G solvation = 177.824454 kcal Electronic energy + Delta-G solvation = -26854.030077 eV Core-core repulsion = 22939.921760 eV Total energy + Delta-G solvation = -3914.108317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.09281 -41.55662 -39.16640 -38.36997 -35.35449 -33.51769 -33.02916 -32.01010 -31.40138 -29.60240 -27.97718 -26.72541 -26.62819 -25.28021 -24.40699 -22.73259 -21.94559 -21.18303 -20.67235 -19.83432 -19.61910 -18.23587 -17.35820 -16.77032 -16.37602 -15.95975 -15.89936 -15.52165 -15.13380 -14.98163 -14.58850 -14.18486 -14.09046 -13.78663 -13.51337 -13.32335 -13.08854 -12.93571 -12.60088 -12.51478 -12.25986 -12.19699 -12.12171 -11.85778 -11.40320 -11.19649 -10.99765 -10.96120 -10.54215 -10.24133 -10.20785 -9.90909 -9.57722 -9.27261 -9.13974 -9.07405 -8.97266 -8.43583 -7.27443 -6.06343 -3.41673 1.27851 1.78512 2.27314 2.52341 2.62289 2.64955 3.23515 3.25100 3.31101 3.33383 3.41992 4.20562 4.32570 4.57260 4.61711 4.69884 4.72738 4.74558 4.91444 4.97062 5.12869 5.16493 5.19141 5.19841 5.36977 5.38977 5.48864 5.58018 5.72377 5.83720 5.95972 6.03741 6.09623 6.13729 6.20487 6.28060 6.52097 6.52392 6.74888 6.78145 6.95959 7.01256 7.15031 7.35109 7.66256 8.02350 8.71789 8.74100 9.40294 10.17587 11.10997 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.002278 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.962871 B =12289.635348 C =12945.137341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.411 5.411 3 C 0.012 3.988 4 C -0.207 4.207 5 C -0.139 4.139 6 C -0.052 4.052 7 C 0.592 3.408 8 O -0.552 6.552 9 N -0.710 5.710 10 C 0.219 3.781 11 C -0.064 4.064 12 C -0.013 4.013 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.163 3.837 16 N -0.599 5.599 17 C -0.231 4.231 18 H 0.088 0.912 19 C -0.002 4.002 20 N -0.919 5.919 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.287 1.287 25 C 0.120 3.880 26 N -0.088 5.088 27 N -0.266 5.266 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.406 0.594 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.191 0.809 38 H 0.132 0.868 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.259 0.741 42 H 0.062 0.938 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 17.650 -8.505 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.084 5.084 3 C -0.123 4.123 4 C -0.231 4.231 5 C -0.165 4.165 6 C -0.165 4.165 7 C 0.380 3.620 8 O -0.433 6.433 9 N -0.362 5.362 10 C 0.094 3.906 11 C -0.203 4.203 12 C -0.167 4.167 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.358 4.358 18 H 0.106 0.894 19 C -0.199 4.199 20 N -0.565 5.565 21 Si 0.749 3.251 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.007 4.007 26 N -0.067 5.067 27 N -0.133 5.133 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.185 0.815 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.241 0.759 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.208 0.792 38 H 0.150 0.850 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.897 16.877 -9.502 21.314 hybrid contribution 0.606 -0.008 1.978 2.069 sum -8.291 16.869 -7.524 20.246 Atomic orbital electron populations 1.22292 0.76110 1.05443 1.03780 1.43847 1.06824 1.04945 1.52797 1.22023 0.90743 0.91493 1.08081 1.20839 0.96044 0.95045 1.11198 1.21400 0.94506 0.95605 1.05035 1.20023 0.90490 0.87551 1.18463 1.16916 0.85447 0.83451 0.76222 1.90777 1.16352 1.84882 1.51243 1.45675 1.10201 1.05959 1.74345 1.19286 0.90908 0.76969 1.03421 1.21681 1.02632 1.05816 0.90199 1.23512 0.92647 0.98683 1.01831 1.47916 1.21567 1.30095 1.06130 1.25294 0.90035 0.93046 0.94113 1.22747 0.88416 1.02098 0.83069 1.45683 1.07196 1.51572 1.28095 1.19050 0.92426 1.23327 1.01021 0.89426 1.24858 0.96498 0.99565 0.98998 1.69769 1.12770 1.37537 1.36406 0.85943 0.79348 0.78444 0.81375 1.20200 1.21431 1.21372 1.22934 0.95347 0.94450 0.88007 1.78278 1.17373 1.14806 0.96256 1.75025 1.03136 1.10258 1.24847 0.90559 0.90115 0.87690 0.81463 0.83970 0.83837 0.75920 0.89357 0.89616 0.79172 0.85016 0.94074 0.89019 0.93142 0.91950 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.64 59.85 0.64 1.14 16 2 N -0.41 -4.11 3.16 -120.24 -0.38 -4.49 16 3 C 0.01 0.10 11.38 -16.91 -0.19 -0.09 16 4 C -0.21 -1.87 10.81 -39.98 -0.43 -2.30 16 5 C -0.14 -1.43 10.35 -39.12 -0.41 -1.83 16 6 C -0.05 -0.60 6.88 -81.98 -0.56 -1.16 16 7 C 0.59 7.52 7.77 -12.86 -0.10 7.42 16 8 O -0.55 -8.20 14.67 5.19 0.08 -8.12 16 9 N -0.71 -8.15 5.53 -62.80 -0.35 -8.50 16 10 C 0.22 2.61 6.24 -5.19 -0.03 2.57 16 11 C -0.06 -0.90 6.61 -82.78 -0.55 -1.44 16 12 C -0.01 -0.18 10.72 -17.05 -0.18 -0.37 16 13 N -0.26 -4.26 3.54 -56.31 -0.20 -4.46 16 14 C 0.08 1.31 5.13 -70.16 -0.36 0.95 16 15 C 0.16 3.32 6.90 -2.84 -0.02 3.30 16 16 N -0.60 -13.71 3.70 -177.90 -0.66 -14.37 16 17 C -0.23 -5.92 10.70 -15.06 -0.16 -6.09 16 18 H 0.09 2.17 7.83 -52.49 -0.41 1.76 16 19 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 20 N -0.92 -25.01 11.39 55.49 0.63 -24.38 16 21 Si 0.92 20.64 29.55 -169.99 -5.02 15.62 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.12 2.19 8.74 -2.97 -0.03 2.17 16 26 N -0.09 -1.51 13.17 60.35 0.79 -0.72 16 27 N -0.27 -4.37 12.41 33.29 0.41 -3.96 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 1.00 6.23 -51.93 -0.32 0.67 16 31 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.25 7.45 -52.48 -0.39 0.86 16 34 H 0.41 4.24 7.37 -40.82 -0.30 3.94 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.19 2.41 6.74 -52.48 -0.35 2.06 16 38 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 39 H 0.04 0.82 6.31 -51.93 -0.33 0.49 16 40 H 0.09 2.08 7.16 -51.93 -0.37 1.70 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -31.56 367.33 -7.06 -38.62 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.42 Total: 5.09 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.48 Total: 4.12 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.25 Total: -60.87 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.56 -7.06 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094276492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.447 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds