Wall clock time and date at job start Tue Mar 31 2020 05:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36450 * 124.84713 * 2 1 4 4 C 1.34486 * 108.85395 * 179.97438 * 3 2 1 5 5 C 1.46696 * 106.33285 * 0.02562 * 4 3 2 6 6 C 1.47263 * 126.94227 * 179.97438 * 5 4 3 7 7 O 1.21618 * 119.99870 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99715 * 0.02599 * 6 5 4 9 9 C 1.46501 * 120.00017 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47705 * 179.97438 * 9 8 6 11 11 C 1.35348 * 126.75026 * 94.99599 * 10 9 8 12 12 N 1.35317 * 106.17735 * 179.78015 * 11 10 9 13 13 C 1.46497 * 125.87017 * 180.21003 * 12 11 10 14 14 C 1.53942 * 113.74196 * 13.74138 * 13 12 11 15 15 N 1.47811 * 86.03642 * 222.08692 * 14 13 12 16 16 C 1.36938 * 134.45712 * 204.64673 * 15 14 13 17 17 H 1.08006 * 119.99731 * 179.86683 * 16 15 14 18 18 C 1.38810 * 119.99900 * 359.86196 * 16 15 14 19 19 N 1.31615 * 120.00084 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99728 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47171 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46783 * 120.00280 * 20 18 16 23 23 H 1.48496 * 109.46765 * 240.00006 * 20 18 16 24 24 C 1.47587 * 91.05119 * 24.54774 * 15 14 13 25 25 N 1.28721 * 108.26102 * 0.22816 * 12 11 10 26 26 N 1.28636 * 110.17709 * 0.02562 * 25 12 11 27 27 C 1.34656 * 124.85313 * 180.27373 * 2 1 3 28 28 H 1.09001 * 109.47501 * 90.01591 * 1 2 3 29 29 H 1.09001 * 109.46443 * 210.01990 * 1 2 3 30 30 H 1.09004 * 109.47244 * 330.01573 * 1 2 3 31 31 H 1.07993 * 125.57072 * 359.97057 * 3 2 1 32 32 H 1.07992 * 126.83679 * 180.02562 * 4 3 2 33 33 H 0.96996 * 120.00676 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46926 * 59.99730 * 9 8 6 35 35 H 1.09001 * 109.47077 * 300.00602 * 9 8 6 36 36 H 1.08002 * 126.91502 * 0.05047 * 11 10 9 37 37 H 1.09004 * 112.94415 * 145.33322 * 13 12 11 38 38 H 1.09001 * 113.77001 * 336.34585 * 14 13 12 39 39 H 1.08996 * 113.77272 * 107.74936 * 14 13 12 40 40 H 0.97005 * 119.99940 * 180.02562 * 19 18 16 41 41 H 1.09000 * 113.76860 * 221.15477 * 24 15 14 42 42 H 1.09000 * 113.86642 * 89.77210 * 24 15 14 43 43 H 1.08002 * 125.79832 * 0.05700 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7493 0.0006 5 6 3.5462 -0.7177 0.0003 6 6 4.7284 -1.5957 0.0002 7 8 4.5886 -2.8038 -0.0005 8 7 5.9653 -1.0605 0.0009 9 6 7.1414 -1.9339 0.0014 10 6 8.3919 -1.0929 0.0014 11 6 9.1163 -0.7191 1.0819 12 7 10.1473 0.0180 0.6078 13 6 11.2030 0.6358 1.4141 14 6 11.2607 0.1170 2.8623 15 7 11.4716 1.5275 3.2506 16 6 12.0536 2.1504 4.3222 17 1 12.0820 3.2291 4.3698 18 6 12.6071 1.3956 5.3473 19 7 12.5729 0.0812 5.2891 20 14 13.4004 2.2455 6.8095 21 1 13.3099 3.7175 6.6355 22 1 12.6950 1.8494 8.0548 23 1 14.8275 1.8451 6.9003 24 6 10.8057 1.9945 2.0191 25 7 10.0409 0.0834 -0.6733 26 7 9.0022 -0.5660 -1.0660 27 6 2.2346 -1.1050 -0.0053 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5136 31 1 1.8828 2.1373 -0.0005 32 1 4.3980 1.4017 0.0011 33 1 6.0769 -0.0970 0.0011 34 1 7.1272 -2.5630 -0.8887 35 1 7.1263 -2.5633 0.8912 36 1 8.9148 -0.9639 2.1143 37 1 12.1706 0.6450 0.9123 38 1 10.3184 -0.3002 3.2174 39 1 12.1158 -0.5281 3.0641 40 1 12.9593 -0.4462 6.0056 41 1 11.2983 2.8457 1.5490 42 1 9.7294 2.1308 2.1243 43 1 1.8767 -2.1240 -0.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094284825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:15 Heat of formation + Delta-G solvation = 177.373681 kcal Electronic energy + Delta-G solvation = -26589.255127 eV Core-core repulsion = 22675.127263 eV Total energy + Delta-G solvation = -3914.127864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.01586 -41.43241 -39.07967 -38.32887 -35.06015 -33.40793 -33.07791 -31.93871 -31.13138 -29.42169 -27.98045 -27.57135 -26.09257 -25.22891 -24.35681 -22.60576 -21.88717 -21.05776 -20.37219 -19.76859 -19.57606 -18.25333 -17.33621 -16.74911 -16.21219 -15.89676 -15.75891 -15.46025 -15.11258 -15.01769 -14.56678 -14.37218 -14.06282 -13.61605 -13.35580 -13.29470 -13.05811 -12.88767 -12.85598 -12.54219 -12.27267 -12.12674 -12.08071 -11.80863 -11.33569 -11.16821 -10.97880 -10.90459 -10.48711 -10.19567 -10.01907 -9.87966 -9.51927 -9.08950 -9.07958 -9.00750 -8.82637 -8.54392 -7.24909 -6.04132 -3.39420 1.63495 1.87005 2.20084 2.43346 2.62704 2.68594 3.26390 3.32198 3.34592 3.56621 3.62643 4.22975 4.32896 4.43136 4.63943 4.67730 4.72012 4.75372 4.75899 4.93559 4.97019 5.10812 5.21123 5.22550 5.24426 5.43151 5.58203 5.65741 5.67580 5.81722 5.89337 6.07722 6.13587 6.21538 6.34377 6.44505 6.51351 6.56855 6.76267 6.81344 6.93341 7.06529 7.17770 7.63091 7.68309 8.35245 8.75890 8.79281 9.42433 10.20202 11.13184 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002249 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.118861 B =12448.136061 C =13413.884940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.449 5.449 3 C -0.019 4.019 4 C -0.167 4.167 5 C -0.232 4.232 6 C 0.593 3.407 7 O -0.557 6.557 8 N -0.719 5.719 9 C 0.217 3.783 10 C -0.061 4.061 11 C -0.015 4.015 12 N -0.266 5.266 13 C 0.078 3.922 14 C 0.163 3.837 15 N -0.599 5.599 16 C -0.231 4.231 17 H 0.088 0.912 18 C -0.002 4.002 19 N -0.919 5.919 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.287 1.287 24 C 0.120 3.880 25 N -0.090 5.090 26 N -0.267 5.267 27 C 0.074 3.926 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.146 0.854 33 H 0.402 0.598 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.191 0.809 37 H 0.132 0.868 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.258 0.742 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.054 0.106 -9.555 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.125 5.125 3 C -0.145 4.145 4 C -0.191 4.191 5 C -0.243 4.243 6 C 0.382 3.618 7 O -0.437 6.437 8 N -0.370 5.370 9 C 0.091 3.909 10 C -0.200 4.200 11 C -0.169 4.169 12 N -0.058 5.058 13 C -0.024 4.024 14 C 0.037 3.963 15 N -0.326 5.326 16 C -0.358 4.358 17 H 0.105 0.895 18 C -0.199 4.199 19 N -0.565 5.565 20 Si 0.749 3.251 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.007 4.007 25 N -0.069 5.069 26 N -0.134 5.134 27 C -0.062 4.062 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.184 0.816 32 H 0.163 0.837 33 H 0.237 0.763 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.208 0.792 37 H 0.149 0.851 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -20.645 -0.123 -10.529 23.175 hybrid contribution 0.095 0.618 1.965 2.062 sum -20.550 0.495 -8.563 22.268 Atomic orbital electron populations 1.22122 0.76894 1.04705 1.03545 1.43627 1.06779 1.05960 1.56116 1.21749 0.90580 0.91283 1.10888 1.22086 0.96284 0.93276 1.07412 1.20334 0.92527 0.93336 1.18055 1.17314 0.82167 0.86953 0.75336 1.90763 1.86635 1.14665 1.51615 1.45796 1.04937 1.10611 1.75633 1.19257 0.78138 0.89950 1.03506 1.21749 1.01370 1.07052 0.89791 1.23508 0.91427 0.99938 1.02023 1.47893 1.19343 1.32522 1.06062 1.25256 0.88780 0.96830 0.91567 1.22747 1.01012 0.89862 0.82718 1.45683 1.64644 1.01559 1.20689 1.19047 1.30127 0.91040 0.95589 0.89454 1.24856 1.00709 0.95643 0.98726 1.69771 1.49123 1.03604 1.33957 0.85947 0.78776 0.78536 0.81879 1.20220 1.21438 1.21393 1.22931 0.96972 0.93568 0.87266 1.78267 1.15569 1.19386 0.93682 1.75020 1.02678 1.09564 1.26093 1.21775 0.89790 0.91747 1.02839 0.90652 0.89565 0.89574 0.81622 0.83650 0.76325 0.89829 0.89677 0.79225 0.85073 0.94047 0.89036 0.93150 0.91999 0.93929 0.80804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 11.03 59.85 0.66 0.89 16 2 N -0.45 -3.36 3.09 -124.53 -0.38 -3.74 16 3 C -0.02 -0.15 11.34 -16.82 -0.19 -0.34 16 4 C -0.17 -1.63 10.56 -37.49 -0.40 -2.02 16 5 C -0.23 -2.72 6.29 -103.35 -0.65 -3.37 16 6 C 0.59 8.22 7.81 -12.59 -0.10 8.12 16 7 O -0.56 -9.31 16.91 5.26 0.09 -9.23 16 8 N -0.72 -9.05 5.54 -62.62 -0.35 -9.40 16 9 C 0.22 2.83 6.23 -5.20 -0.03 2.80 16 10 C -0.06 -0.90 6.61 -82.78 -0.55 -1.44 16 11 C -0.02 -0.23 10.72 -17.05 -0.18 -0.41 16 12 N -0.27 -4.42 3.54 -56.31 -0.20 -4.62 16 13 C 0.08 1.35 5.14 -70.15 -0.36 0.99 16 14 C 0.16 3.37 6.90 -2.84 -0.02 3.36 16 15 N -0.60 -13.88 3.70 -177.89 -0.66 -14.54 16 16 C -0.23 -5.97 10.70 -15.06 -0.16 -6.13 16 17 H 0.09 2.18 7.83 -52.48 -0.41 1.77 16 18 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 19 N -0.92 -25.20 11.39 55.49 0.63 -24.57 16 20 Si 0.92 20.77 29.55 -169.99 -5.02 15.75 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.12 2.23 8.74 -2.96 -0.03 2.20 16 25 N -0.09 -1.60 13.17 60.35 0.79 -0.81 16 26 N -0.27 -4.58 12.41 33.29 0.41 -4.17 16 27 C 0.07 0.72 11.12 -16.85 -0.19 0.53 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.19 8.13 -51.93 -0.42 -0.24 16 30 H 0.09 0.16 8.13 -51.93 -0.42 -0.27 16 31 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.15 1.23 7.69 -52.49 -0.40 0.83 16 33 H 0.40 4.63 7.59 -40.82 -0.31 4.32 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.19 2.53 6.73 -52.49 -0.35 2.18 16 37 H 0.13 2.22 8.14 -51.93 -0.42 1.79 16 38 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16 39 H 0.09 2.10 7.16 -51.93 -0.37 1.73 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -33.08 372.17 -6.90 -39.99 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.54 Total: 4.72 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.29 Total: 5.02 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.25 Total: -61.85 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.08 -6.90 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094284825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.361 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds