Wall clock time and date at job start Tue Mar 31 2020 05:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34490 * 126.83611 * 2 1 4 4 N 1.36444 * 108.85704 * 180.25200 * 3 2 1 5 5 H 0.96997 * 124.85289 * 179.73075 * 4 3 2 6 6 C 1.34664 * 110.29712 * 359.74679 * 4 3 2 7 7 C 1.36759 * 108.39803 * 0.02562 * 6 4 3 8 8 C 1.47265 * 126.94434 * 179.97438 * 7 6 4 9 9 O 1.21629 * 120.00409 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99844 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00079 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47068 * 179.97438 * 11 10 8 13 13 C 1.35359 * 126.74961 * 95.00162 * 12 11 10 14 14 N 1.35312 * 106.17441 * 180.24929 * 13 12 11 15 15 C 1.46500 * 125.86582 * 179.77310 * 14 13 12 16 16 C 1.53946 * 113.74389 * 13.73944 * 15 14 13 17 17 N 1.47814 * 86.03408 * 222.08250 * 16 15 14 18 18 C 1.36934 * 134.45362 * 204.63601 * 17 16 15 19 19 H 1.07999 * 119.99941 * 179.86775 * 18 17 16 20 20 C 1.38811 * 120.00239 * 359.87816 * 18 17 16 21 21 N 1.31625 * 119.99777 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00195 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47105 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46954 * 119.99334 * 22 20 18 25 25 H 1.48497 * 109.47505 * 239.99789 * 22 20 18 26 26 C 1.47585 * 91.04981 * 24.54891 * 17 16 15 27 27 N 1.28713 * 108.26446 * 359.62122 * 14 13 12 28 28 N 1.28640 * 110.17981 * 0.39068 * 27 14 13 29 29 H 1.08992 * 109.47043 * 270.14610 * 1 2 3 30 30 H 1.08996 * 109.46849 * 30.14953 * 1 2 3 31 31 H 1.08999 * 109.47071 * 150.14377 * 1 2 3 32 32 H 1.07996 * 125.57279 * 0.04051 * 3 2 1 33 33 H 1.07999 * 125.79768 * 180.02562 * 6 4 3 34 34 H 0.97003 * 120.00125 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.47254 * 60.00073 * 11 10 8 36 36 H 1.08996 * 109.47228 * 299.99610 * 11 10 8 37 37 H 1.08002 * 126.90931 * 359.97438 * 13 12 11 38 38 H 1.09006 * 112.94165 * 145.33088 * 15 14 13 39 39 H 1.09007 * 113.76670 * 336.34763 * 16 15 14 40 40 H 1.08994 * 113.76909 * 107.74407 * 16 15 14 41 41 H 0.96999 * 119.99949 * 180.02562 * 21 20 18 42 42 H 1.09005 * 113.76382 * 221.15065 * 26 17 16 43 43 H 1.08994 * 113.87250 * 89.76970 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0106 6 6 3.6656 -0.6903 -0.0038 7 6 2.3864 -1.1741 0.0026 8 6 1.9749 -2.5880 0.0061 9 8 0.7936 -2.8777 0.0114 10 7 2.9073 -3.5612 0.0034 11 6 2.4979 -4.9679 0.0063 12 6 3.7218 -5.8472 0.0018 13 6 4.3290 -6.3957 1.0801 14 7 5.3832 -7.0970 0.6030 15 6 6.3409 -7.8604 1.4069 16 6 5.8836 -8.0955 2.8579 17 7 7.2784 -7.7882 3.2388 18 6 8.0730 -8.1066 4.3076 19 1 9.0909 -7.7482 4.3494 20 6 7.5703 -8.8902 5.3372 21 7 6.3296 -9.3267 5.2864 22 14 8.6545 -9.3251 6.7949 23 1 9.9963 -8.7154 6.6131 24 1 8.0395 -8.8039 8.0421 25 1 8.7894 -10.8009 6.8887 26 6 7.4712 -7.0029 2.0042 27 7 5.3982 -6.9807 -0.6788 28 7 4.4221 -6.2389 -1.0685 29 1 -0.3633 0.0026 1.0276 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3633 -0.8913 -0.5116 32 1 1.9869 2.1058 0.0006 33 1 4.5664 -1.2861 -0.0069 34 1 3.8494 -3.3303 -0.0012 35 1 1.8997 -5.1740 -0.8812 36 1 1.9066 -5.1724 0.8988 37 1 4.0341 -6.2906 2.1138 38 1 6.6923 -8.7625 0.9059 39 1 5.1593 -7.3630 3.2144 40 1 5.5871 -9.1239 3.0640 41 1 5.9781 -9.8740 6.0061 42 1 8.4399 -7.1607 1.5300 43 1 7.2150 -5.9485 2.1076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094337230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:21 Heat of formation + Delta-G solvation = 166.178380 kcal Electronic energy + Delta-G solvation = -26771.499370 eV Core-core repulsion = 22856.886041 eV Total energy + Delta-G solvation = -3914.613329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.06070 -41.38685 -39.04467 -38.36360 -35.11739 -33.40988 -32.60615 -32.03534 -31.45626 -29.93610 -27.97777 -26.74274 -26.60425 -25.28388 -24.39799 -22.93422 -21.92850 -21.09390 -20.12957 -19.66292 -19.42880 -18.56992 -17.42001 -16.85336 -16.32050 -16.17890 -15.41133 -15.32728 -15.13614 -14.70467 -14.36049 -14.18072 -14.07598 -13.79788 -13.33317 -13.19961 -12.96170 -12.84273 -12.80559 -12.50054 -12.20029 -12.12096 -11.84939 -11.56037 -11.37291 -11.19663 -11.00144 -10.94538 -10.52012 -10.22301 -9.98280 -9.90215 -9.55885 -9.12718 -9.11377 -9.04195 -8.76889 -8.51389 -7.28037 -6.06845 -3.42352 1.58502 1.82754 2.19309 2.47006 2.64479 2.95329 3.24365 3.30155 3.32628 3.51403 3.53279 4.20201 4.38525 4.60033 4.71543 4.72497 4.81319 4.86029 4.96163 5.17245 5.18048 5.19956 5.36366 5.40444 5.55317 5.59675 5.67372 5.73774 5.79699 5.94508 6.03389 6.09335 6.09918 6.17554 6.30386 6.41772 6.53039 6.58317 6.66645 6.78211 7.02496 7.14738 7.15824 7.57509 7.65570 8.33327 8.72995 8.75051 9.39652 10.17053 11.10436 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.002299 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.057657 B =12178.248241 C =12927.526324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.109 4.109 3 C -0.029 4.029 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.049 3.951 7 C -0.226 4.226 8 C 0.591 3.409 9 O -0.544 6.544 10 N -0.724 5.724 11 C 0.217 3.783 12 C -0.061 4.061 13 C -0.016 4.016 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.599 5.599 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.120 3.880 27 N -0.090 5.090 28 N -0.267 5.267 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.398 0.602 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.191 0.809 38 H 0.132 0.868 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.259 0.741 42 H 0.062 0.938 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 17.714 -9.603 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.156 4.156 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.088 4.088 7 C -0.237 4.237 8 C 0.379 3.621 9 O -0.422 6.422 10 N -0.376 5.376 11 C 0.092 3.908 12 C -0.200 4.200 13 C -0.169 4.169 14 N -0.058 5.058 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.326 5.326 18 C -0.359 4.359 19 H 0.105 0.895 20 C -0.199 4.199 21 N -0.564 5.564 22 Si 0.749 3.251 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.007 4.007 27 N -0.069 5.069 28 N -0.134 5.134 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.232 0.768 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.208 0.792 38 H 0.149 0.851 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.716 17.001 -10.579 20.823 hybrid contribution 1.089 0.332 1.985 2.288 sum -4.627 17.332 -8.593 19.891 Atomic orbital electron populations 1.20193 0.89286 1.02571 1.02003 1.20567 0.95669 0.90299 1.04970 1.21579 0.82433 0.99229 1.12381 1.41491 1.08353 1.06698 1.57830 0.74620 1.21959 0.98628 0.83906 1.04294 1.20364 0.92669 0.92791 1.17837 1.17353 0.85251 0.83902 0.75577 1.90747 1.17124 1.83719 1.50648 1.45875 1.09741 1.05683 1.76273 1.19249 0.90567 0.77396 1.03570 1.21765 1.02019 1.06454 0.89773 1.23517 0.91639 0.99716 1.02047 1.47900 1.19823 1.32066 1.06010 1.25268 0.89846 0.95677 0.91661 1.22750 0.88568 1.02287 0.82724 1.45684 1.09390 1.56884 1.20604 1.19040 0.93858 1.27396 0.95599 0.89461 1.24860 0.96623 0.99704 0.98712 1.69772 1.14014 1.38816 1.33816 0.85946 0.79278 0.78065 0.81834 1.20229 1.21423 1.21353 1.22923 0.95793 0.94671 0.87328 1.78270 1.17824 1.17104 0.93710 1.75025 1.02321 1.09986 1.26059 0.91797 0.92478 0.90229 0.81460 0.81147 0.76780 0.89795 0.89639 0.79221 0.85062 0.94050 0.89022 0.93120 0.92007 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.97 36.01 0.36 -0.47 16 2 C -0.11 -1.15 6.35 -102.54 -0.65 -1.80 16 3 C -0.03 -0.22 11.82 -16.82 -0.20 -0.42 16 4 N -0.55 -3.44 5.90 -12.85 -0.08 -3.52 16 5 H 0.42 1.19 8.96 -40.82 -0.37 0.82 16 6 C 0.05 0.40 11.40 -16.84 -0.19 0.20 16 7 C -0.23 -2.57 6.29 -103.35 -0.65 -3.22 16 8 C 0.59 7.89 7.81 -12.59 -0.10 7.79 16 9 O -0.54 -8.92 15.32 5.25 0.08 -8.84 16 10 N -0.72 -8.47 5.54 -62.61 -0.35 -8.81 16 11 C 0.22 2.71 6.23 -5.19 -0.03 2.68 16 12 C -0.06 -0.87 6.62 -82.77 -0.55 -1.42 16 13 C -0.02 -0.23 10.72 -17.04 -0.18 -0.41 16 14 N -0.27 -4.29 3.54 -56.30 -0.20 -4.49 16 15 C 0.08 1.32 5.14 -70.15 -0.36 0.96 16 16 C 0.16 3.32 6.90 -2.84 -0.02 3.30 16 17 N -0.60 -13.69 3.70 -177.89 -0.66 -14.35 16 18 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16 19 H 0.09 2.15 7.83 -52.49 -0.41 1.74 16 20 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 21 N -0.92 -24.99 11.39 55.49 0.63 -24.36 16 22 Si 0.92 20.59 29.55 -169.99 -5.02 15.57 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.12 2.19 8.74 -2.97 -0.03 2.16 16 27 N -0.09 -1.56 13.17 60.35 0.79 -0.76 16 28 N -0.27 -4.44 12.41 33.29 0.41 -4.03 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.96 6.86 -51.93 -0.36 0.60 16 32 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.17 0.95 7.45 -52.49 -0.39 0.56 16 34 H 0.40 4.01 7.41 -40.82 -0.30 3.71 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.19 2.45 6.73 -52.49 -0.35 2.09 16 38 H 0.13 2.18 8.14 -51.93 -0.42 1.75 16 39 H 0.04 0.82 6.31 -51.93 -0.33 0.50 16 40 H 0.09 2.08 7.17 -51.93 -0.37 1.71 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -32.85 368.11 -7.09 -39.95 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.40 Total: 4.94 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.86 Total: 3.15 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.56 Total: -60.31 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.85 -7.09 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094337230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.124 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds