Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46877 * 119.99869 * 3 2 1 6 6 H 1.48505 * 109.47159 * 239.99685 * 3 2 1 7 7 C 1.38810 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99924 * 154.40196 * 7 2 1 9 9 N 1.36932 * 120.00091 * 334.39996 * 7 2 1 10 10 C 1.50241 * 130.84090 * 341.17343 * 9 7 2 11 11 H 1.09006 * 115.85472 * 359.68198 * 10 9 7 12 12 C 1.55380 * 101.26329 * 234.04425 * 10 9 7 13 13 C 1.54854 * 103.48747 * 327.24393 * 12 10 9 14 14 C 1.50240 * 130.83878 * 161.51306 * 9 7 2 15 15 H 1.09000 * 115.86218 * 0.32500 * 14 9 7 16 16 C 1.55846 * 101.05187 * 233.92919 * 14 9 7 17 17 H 1.09007 * 110.62048 * 85.55046 * 16 14 9 18 18 N 1.46501 * 110.62809 * 208.57270 * 16 14 9 19 19 C 1.34781 * 119.99698 * 274.07297 * 18 16 14 20 20 O 1.21281 * 120.00058 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99531 * 180.02562 * 19 18 16 22 22 H 1.08998 * 109.49822 * 299.93292 * 21 19 18 23 23 C 1.53119 * 109.49344 * 179.83870 * 21 19 18 24 24 C 1.53282 * 109.70639 * 170.15037 * 23 21 19 25 25 N 1.46467 * 108.69670 * 50.76470 * 24 23 21 26 26 C 1.34412 * 128.44346 * 162.64829 * 25 24 23 27 27 N 1.30781 * 108.55500 * 180.16719 * 26 25 24 28 28 C 1.34435 * 109.32012 * 359.94761 * 27 26 25 29 29 C 1.33859 * 107.79575 * 359.97438 * 28 27 26 30 30 C 1.50714 * 128.68046 * 180.08521 * 29 28 27 31 31 C 1.55481 * 103.32614 * 326.97698 * 16 14 9 32 32 H 0.97004 * 120.00027 * 181.63403 * 1 2 3 33 33 H 1.09005 * 110.71569 * 208.69091 * 12 10 9 34 34 H 1.09003 * 110.50204 * 85.69906 * 12 10 9 35 35 H 1.09000 * 110.63186 * 241.38622 * 13 12 10 36 36 H 1.09002 * 110.62295 * 118.36208 * 13 12 10 37 37 H 0.96999 * 119.99793 * 94.07344 * 18 16 14 38 38 H 1.09001 * 109.43088 * 290.21438 * 23 21 19 39 39 H 1.08999 * 109.43216 * 50.07651 * 23 21 19 40 40 H 1.09001 * 109.58972 * 291.00135 * 24 23 21 41 41 H 1.09005 * 109.73776 * 170.61527 * 24 23 21 42 42 H 1.08002 * 125.71880 * 0.17001 * 26 25 24 43 43 H 1.07998 * 126.09957 * 179.97438 * 28 27 26 44 44 H 1.09001 * 109.74226 * 44.60758 * 30 29 28 45 45 H 1.08994 * 109.78132 * 283.90904 * 30 29 28 46 46 H 1.08994 * 110.61019 * 241.57899 * 31 16 14 47 47 H 1.09004 * 110.89004 * 118.54878 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0108 -1.2482 -0.4036 9 7 1.4264 -2.3296 0.5134 10 6 0.2588 -2.4947 1.4444 11 1 -0.2134 -1.5724 1.7829 12 6 0.8844 -3.3730 2.5631 13 6 1.9097 -4.2499 1.8029 14 6 1.7603 -3.7821 0.3238 15 1 2.6107 -3.9937 -0.3245 16 6 0.3846 -4.3465 -0.1425 17 1 0.2665 -4.2288 -1.2197 18 7 0.2466 -5.7533 0.2426 19 6 0.7343 -6.7219 -0.5577 20 8 1.2877 -6.4290 -1.5963 21 6 0.5918 -8.1690 -0.1618 22 1 1.0955 -8.3371 0.7901 23 6 1.2217 -9.0576 -1.2380 24 6 1.3013 -10.5028 -0.7335 25 7 -0.0158 -10.8972 -0.2287 26 6 -0.4848 -12.1348 0.0055 27 7 -1.7114 -12.0382 0.4487 28 6 -2.0607 -10.7415 0.5115 29 6 -1.0161 -10.0157 0.0944 30 6 -0.8963 -8.5179 -0.0220 31 6 -0.6424 -3.4660 0.6239 32 1 -0.4850 -0.8397 0.0240 33 1 0.1239 -3.9943 3.0362 34 1 1.3864 -2.7490 3.3025 35 1 1.6578 -5.3060 1.8989 36 1 2.9201 -4.0606 2.1653 37 1 -0.1957 -5.9875 1.0735 38 1 0.6116 -9.0218 -2.1406 39 1 2.2250 -8.6968 -1.4646 40 1 2.0357 -10.5697 0.0692 41 1 1.5923 -11.1626 -1.5510 42 1 0.0601 -13.0548 -0.1466 43 1 -3.0140 -10.3545 0.8399 44 1 -1.3034 -8.0454 0.8719 45 1 -1.4392 -8.1716 -0.9013 46 1 -1.2520 -4.0781 1.2886 47 1 -1.2729 -2.9106 -0.0705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095639767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = 68.315718 kcal Electronic energy + Delta-G solvation = -28913.023145 eV Core-core repulsion = 25097.706516 eV Total energy + Delta-G solvation = -3815.316629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60424 -40.34182 -38.88125 -36.41749 -34.23037 -33.37085 -32.50920 -30.77472 -29.53514 -29.10796 -28.52794 -27.35634 -25.03321 -24.07331 -23.09790 -21.77672 -21.52195 -20.50370 -19.69091 -19.37620 -18.78083 -17.72709 -17.46786 -17.01539 -16.14916 -15.58939 -15.49123 -14.95236 -14.43712 -14.41329 -14.33019 -14.06254 -13.95242 -13.71157 -13.52418 -13.41243 -12.96966 -12.53851 -12.35118 -12.11168 -11.91790 -11.78345 -11.54016 -11.39024 -11.33993 -11.09356 -10.79488 -10.62587 -10.30336 -10.23588 -10.13952 -10.00970 -9.79097 -9.66925 -9.60570 -9.45454 -8.74678 -8.60067 -8.48912 -7.01127 -6.22437 -3.18181 1.78702 2.48333 2.66086 2.92371 3.20746 3.46757 3.50196 3.67917 4.04917 4.21458 4.26750 4.39491 4.49811 4.51022 4.74132 4.77723 4.86306 4.96258 5.07454 5.09853 5.26290 5.29382 5.33618 5.37999 5.48586 5.56060 5.60774 5.67867 5.70720 5.76198 5.84242 5.89766 6.03952 6.07960 6.09110 6.29171 6.38465 6.48179 6.49870 6.60531 6.67000 6.75817 6.93681 6.97972 7.07600 7.54284 7.65624 7.81601 8.32020 8.37934 8.89987 9.73021 10.41639 11.20416 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.002602 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.109931 B =10758.805710 C =11060.869286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.028 4.028 3 Si 1.074 2.926 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.325 4.325 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.142 3.858 11 H 0.105 0.895 12 C -0.133 4.133 13 C -0.128 4.128 14 C 0.129 3.871 15 H 0.087 0.913 16 C 0.128 3.872 17 H 0.084 0.916 18 N -0.710 5.710 19 C 0.515 3.485 20 O -0.538 6.538 21 C -0.111 4.111 22 H 0.100 0.900 23 C -0.114 4.114 24 C 0.103 3.897 25 N -0.456 5.456 26 C 0.182 3.818 27 N -0.498 5.498 28 C -0.023 4.023 29 C -0.020 4.020 30 C -0.036 4.036 31 C -0.135 4.135 32 H 0.270 0.730 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.395 0.605 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.204 0.796 43 H 0.169 0.831 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 -20.914 2.844 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.229 4.229 3 Si 0.903 3.097 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.452 4.452 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.035 3.965 11 H 0.123 0.877 12 C -0.172 4.172 13 C -0.168 4.168 14 C 0.021 3.979 15 H 0.105 0.895 16 C 0.022 3.978 17 H 0.102 0.898 18 N -0.360 5.360 19 C 0.300 3.700 20 O -0.414 6.414 21 C -0.133 4.133 22 H 0.118 0.882 23 C -0.152 4.152 24 C -0.019 4.019 25 N -0.140 5.140 26 C -0.101 4.101 27 N -0.216 5.216 28 C -0.170 4.170 29 C -0.135 4.135 30 C -0.074 4.074 31 C -0.175 4.175 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.229 0.771 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.220 0.780 43 H 0.187 0.813 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.209 -19.450 2.117 19.566 hybrid contribution 0.573 -1.298 0.190 1.431 sum 0.364 -20.748 2.307 20.879 Atomic orbital electron populations 1.70812 1.06392 1.30428 1.48580 1.25840 0.96616 1.01088 0.99374 0.83362 0.74615 0.75512 0.76173 1.21034 1.22120 1.21984 1.19714 0.98114 0.86536 1.40843 0.91627 1.46521 1.35255 0.99508 1.50108 1.22863 0.89067 0.95258 0.89355 0.87712 1.22884 0.97983 0.98176 0.98187 1.22914 0.98809 0.97469 0.97602 1.23223 0.94606 0.86038 0.94052 0.89512 1.22748 0.98130 0.77362 0.99551 0.89796 1.46260 1.58875 1.06931 1.23944 1.20250 0.78790 0.86837 0.84143 1.90725 1.42654 1.83643 1.24411 1.21433 0.97573 0.93154 1.01159 0.88181 1.21684 1.04131 0.91104 0.98314 1.22078 0.82072 0.97585 1.00155 1.45490 1.12891 1.07046 1.48550 1.24792 0.92713 0.88542 1.04007 1.70504 1.11354 1.20176 1.19544 1.21849 0.99311 0.88870 1.07020 1.21033 0.90597 0.92965 1.08858 1.20182 0.94839 0.88386 1.04041 1.23315 0.96972 0.97887 0.99363 0.91853 0.93042 0.92511 0.92844 0.92828 0.77099 0.90074 0.88173 0.89465 0.88601 0.77964 0.81330 0.88861 0.89341 0.92262 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 12.91 55.49 0.72 -26.30 16 2 C -0.03 -0.78 5.29 -17.43 -0.09 -0.87 16 3 Si 1.07 25.14 29.99 -169.99 -5.10 20.05 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.32 -9.01 10.39 -15.06 -0.16 -9.17 16 8 H 0.07 1.84 7.95 -52.48 -0.42 1.43 16 9 N -0.59 -14.36 2.81 -146.08 -0.41 -14.77 16 10 C 0.14 2.97 3.78 -63.06 -0.24 2.73 16 11 H 0.11 2.48 6.80 -51.93 -0.35 2.13 16 12 C -0.13 -2.30 6.42 -24.49 -0.16 -2.45 16 13 C -0.13 -2.17 6.33 -24.23 -0.15 -2.33 16 14 C 0.13 2.62 5.35 -62.80 -0.34 2.28 16 15 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 16 C 0.13 2.26 3.10 -65.09 -0.20 2.06 16 17 H 0.08 1.74 7.71 -51.93 -0.40 1.34 16 18 N -0.71 -9.20 3.54 -51.07 -0.18 -9.38 16 19 C 0.51 6.74 7.13 -10.98 -0.08 6.66 16 20 O -0.54 -9.39 15.55 5.56 0.09 -9.30 16 21 C -0.11 -1.00 2.54 -91.46 -0.23 -1.23 16 22 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 23 C -0.11 -0.95 4.66 -26.52 -0.12 -1.07 16 24 C 0.10 0.63 7.00 -3.91 -0.03 0.60 16 25 N -0.46 -3.90 3.13 -114.09 -0.36 -4.25 16 26 C 0.18 1.64 12.66 -90.71 -1.15 0.49 16 27 N -0.50 -5.88 11.27 -14.87 -0.17 -6.05 16 28 C -0.02 -0.25 11.84 -17.95 -0.21 -0.46 16 29 C -0.02 -0.19 6.57 -81.73 -0.54 -0.73 16 30 C -0.04 -0.30 5.44 -27.63 -0.15 -0.45 16 31 C -0.14 -2.40 6.08 -23.90 -0.15 -2.55 16 32 H 0.27 7.72 5.57 -40.82 -0.23 7.49 16 33 H 0.05 0.73 7.80 -51.93 -0.41 0.33 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.75 6.48 -51.93 -0.34 0.41 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.39 4.02 7.73 -40.82 -0.32 3.71 16 38 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.10 0.88 7.77 -51.93 -0.40 0.48 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.09 0.63 7.95 -51.93 -0.41 0.21 16 45 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 46 H 0.06 0.84 7.34 -51.93 -0.38 0.46 16 47 H 0.07 1.39 7.64 -51.93 -0.40 0.99 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -34.48 367.01 -10.94 -45.42 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.07 Total: 5.54 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -3.99 Total: -6.49 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.40 Total: -60.75 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.48 -10.94 -45.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095639767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.734 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds