Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47287 * 269.99993 * 3 2 1 5 5 H 1.48506 * 109.47032 * 29.99526 * 3 2 1 6 6 H 1.48500 * 109.47331 * 149.99759 * 3 2 1 7 7 C 1.38811 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00227 * 201.92741 * 7 2 1 9 9 N 1.36942 * 120.00175 * 21.92579 * 7 2 1 10 10 C 1.46503 * 119.99500 * 35.09625 * 9 7 2 11 11 C 1.53004 * 109.46958 * 92.19875 * 10 9 7 12 12 O 1.42894 * 109.47559 * 64.99804 * 11 10 9 13 13 C 1.46493 * 120.00471 * 215.09958 * 9 7 2 14 14 C 1.53042 * 109.45955 * 60.02194 * 13 9 7 15 15 C 1.53197 * 109.31301 * 178.59897 * 14 13 9 16 16 N 1.46927 * 108.76027 * 54.66136 * 15 14 13 17 17 C 1.34781 * 120.63137 * 126.40502 * 16 15 14 18 18 O 1.21277 * 120.00134 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99670 * 359.97301 * 17 16 15 20 20 F 1.39896 * 110.45687 * 57.39881 * 19 17 16 21 21 C 1.54512 * 110.51035 * 180.02562 * 19 17 16 22 22 C 1.54469 * 104.06408 * 118.64629 * 21 19 17 23 23 O 1.44427 * 104.80643 * 23.97975 * 22 21 19 24 24 C 1.44425 * 105.27119 * 319.48474 * 23 22 21 25 25 C 1.46929 * 118.74084 * 306.38221 * 16 15 14 26 26 C 1.53045 * 109.46072 * 299.97336 * 13 9 7 27 27 H 0.96996 * 119.99825 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47379 * 332.19299 * 10 9 7 29 29 H 1.09000 * 109.46782 * 212.19233 * 10 9 7 30 30 H 1.09005 * 109.46750 * 304.99591 * 11 10 9 31 31 H 1.09003 * 109.46907 * 184.99767 * 11 10 9 32 32 H 0.96693 * 114.00275 * 180.02562 * 12 11 10 33 33 H 1.08998 * 109.46540 * 179.97438 * 13 9 7 34 34 H 1.08993 * 109.50436 * 298.57307 * 14 13 9 35 35 H 1.09008 * 109.49561 * 58.67010 * 14 13 9 36 36 H 1.08999 * 109.60027 * 294.87219 * 15 14 13 37 37 H 1.09005 * 109.58294 * 174.43908 * 15 14 13 38 38 H 1.09002 * 110.50774 * 237.29755 * 21 19 17 39 39 H 1.09007 * 110.50963 * 359.97438 * 21 19 17 40 40 H 1.08999 * 110.37358 * 142.81169 * 22 21 19 41 41 H 1.09002 * 110.36957 * 265.14685 * 22 21 19 42 42 H 1.08989 * 110.37888 * 281.68157 * 24 23 22 43 43 H 1.09003 * 110.37102 * 159.34131 * 24 23 22 44 44 H 1.09000 * 109.58261 * 293.82546 * 25 16 15 45 45 H 1.08994 * 109.59101 * 173.40000 * 25 16 15 46 46 H 1.08999 * 109.49318 * 301.33926 * 26 13 9 47 47 H 1.08997 * 109.49463 * 61.39507 * 26 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0316 -1.2358 0.3498 9 7 1.3999 -2.3454 -0.4418 10 6 0.4428 -2.2833 -1.5492 11 6 1.1752 -2.5259 -2.8705 12 8 1.6915 -3.8582 -2.8913 13 6 1.7039 -3.6305 0.1924 14 6 1.3365 -3.5661 1.6767 15 6 1.6230 -4.9225 2.3288 16 7 3.0229 -5.2854 2.0691 17 6 3.8482 -5.6084 3.0845 18 8 5.0015 -5.9067 2.8570 19 6 3.3379 -5.5990 4.5024 20 9 2.2414 -6.4579 4.6331 21 6 4.4609 -6.0008 5.4846 22 6 4.6278 -4.7613 6.3913 23 8 3.3586 -4.0762 6.3171 24 6 2.9592 -4.1642 4.9319 25 6 3.5058 -5.2899 0.6815 26 6 3.1978 -3.9297 0.0478 27 1 -0.4850 0.8400 -0.0004 28 1 -0.0265 -1.2997 -1.5692 29 1 -0.3217 -3.0479 -1.4119 30 1 1.9971 -1.8162 -2.9659 31 1 0.4814 -2.3921 -3.7004 32 1 2.1696 -4.0821 -3.7014 33 1 1.1268 -4.4192 -0.2903 34 1 1.9309 -2.7944 2.1655 35 1 0.2773 -3.3299 1.7794 36 1 0.9642 -5.6793 1.9030 37 1 1.4568 -4.8533 3.4039 38 1 4.1611 -6.8675 6.0737 39 1 5.3852 -6.2066 4.9445 40 1 4.8348 -5.0666 7.4170 41 1 5.4268 -4.1217 6.0163 42 1 3.5022 -3.4332 4.3331 43 1 1.8842 -4.0109 4.8365 44 1 3.0005 -6.0768 0.1214 45 1 4.5818 -5.4634 0.6695 46 1 3.4636 -3.9521 -1.0091 47 1 3.7746 -3.1541 0.5515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098459642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = -144.073341 kcal Electronic energy + Delta-G solvation = -30974.472374 eV Core-core repulsion = 26686.883889 eV Total energy + Delta-G solvation = -4287.588485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.11849 -40.32472 -38.81358 -37.60953 -36.30542 -34.77251 -32.38026 -31.90927 -30.85647 -30.40883 -29.16881 -27.70627 -25.27157 -23.92918 -23.31931 -22.87113 -22.06476 -20.60585 -19.98716 -19.00723 -17.95770 -17.03535 -16.78147 -16.37832 -16.14698 -15.95098 -15.43632 -15.07381 -14.85216 -14.58196 -14.47950 -14.26096 -14.05812 -13.66370 -13.55389 -13.24916 -13.17998 -12.76918 -12.66167 -12.37522 -12.22139 -11.98252 -11.84140 -11.52474 -11.45932 -11.22296 -11.14225 -11.01587 -10.79095 -10.73221 -10.45228 -10.25708 -10.04636 -9.96489 -9.92265 -9.70964 -9.44952 -9.17986 -8.55086 -8.50433 -6.63609 -5.85500 -3.39100 2.36295 2.84856 3.30878 3.39881 3.40814 3.62221 3.81675 4.12553 4.32351 4.42050 4.44565 4.86537 4.90044 5.07712 5.09831 5.16964 5.29507 5.40274 5.43956 5.46011 5.49392 5.54658 5.65953 5.69900 5.74861 5.81162 5.97713 6.08087 6.10257 6.18504 6.34317 6.39313 6.41643 6.46961 6.57547 6.71182 6.78857 7.00046 7.13786 7.19196 7.40358 7.55016 7.77593 7.99177 8.28378 8.44833 9.14124 9.77637 10.36113 11.15277 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.004201 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.183353 B = 6662.903193 C = 7803.125087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.008 3.992 3 Si 0.893 3.107 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.061 0.939 9 N -0.573 5.573 10 C 0.147 3.853 11 C 0.055 3.945 12 O -0.569 6.569 13 C 0.187 3.813 14 C -0.139 4.139 15 C 0.095 3.905 16 N -0.587 5.587 17 C 0.506 3.494 18 O -0.533 6.533 19 C 0.073 3.927 20 F -0.182 7.182 21 C -0.170 4.170 22 C 0.045 3.955 23 O -0.363 6.363 24 C 0.032 3.968 25 C 0.113 3.887 26 C -0.135 4.135 27 H 0.255 0.745 28 H 0.111 0.889 29 H 0.028 0.972 30 H 0.040 0.960 31 H 0.021 0.979 32 H 0.356 0.644 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.514 -10.438 4.890 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.191 4.191 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.078 0.922 9 N -0.292 5.292 10 C 0.021 3.979 11 C -0.025 4.025 12 O -0.372 6.372 13 C 0.079 3.921 14 C -0.179 4.179 15 C -0.027 4.027 16 N -0.319 5.319 17 C 0.291 3.709 18 O -0.410 6.410 19 C 0.051 3.949 20 F -0.163 7.163 21 C -0.208 4.208 22 C -0.032 4.032 23 O -0.281 6.281 24 C -0.045 4.045 25 C -0.009 4.009 26 C -0.175 4.175 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.200 0.800 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.136 0.864 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.539 -10.360 5.539 12.594 hybrid contribution 0.575 0.874 -0.869 1.360 sum 5.114 -9.486 4.670 11.746 Atomic orbital electron populations 1.69950 1.05407 1.25683 1.52276 1.25082 0.94990 0.98518 1.00531 0.86438 0.79516 0.83983 0.77755 1.21470 1.21774 1.20373 1.18991 0.94337 0.85641 1.38937 0.92180 1.43747 1.49586 1.02105 1.33758 1.21113 0.90448 1.02718 0.83653 1.23189 0.96861 0.82346 1.00109 1.86572 1.75541 1.32311 1.42752 1.20214 0.92503 0.89141 0.90225 1.22405 1.02609 0.93864 0.98998 1.22227 0.80524 0.98730 1.01265 1.48175 1.11686 1.64944 1.07054 1.20312 0.86209 0.78094 0.86326 1.90666 1.17520 1.48956 1.83882 1.22474 0.85649 0.91828 0.94992 1.92919 1.54947 1.71601 1.96784 1.23543 0.99783 1.00433 0.97066 1.23491 0.87018 0.91769 1.00930 1.89202 1.36730 1.77231 1.24931 1.24203 1.03448 0.92768 0.84112 1.21800 1.00404 0.99172 0.79534 1.22305 1.00145 0.94245 1.00813 0.93536 0.87216 0.95360 0.94176 0.96047 0.80040 0.92775 0.91103 0.90676 0.91104 0.90233 0.88653 0.86705 0.88113 0.91307 0.89493 0.86356 0.91519 0.89729 0.90461 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 11.36 55.49 0.63 -23.26 16 2 C 0.01 0.22 4.95 -17.43 -0.09 0.13 16 3 Si 0.89 20.68 29.61 -169.99 -5.03 15.64 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.23 8.26 -15.06 -0.12 -6.36 16 8 H 0.06 1.54 6.87 -52.49 -0.36 1.18 16 9 N -0.57 -12.95 2.36 -165.61 -0.39 -13.34 16 10 C 0.15 3.24 5.65 -4.04 -0.02 3.22 16 11 C 0.05 1.03 7.39 37.16 0.27 1.30 16 12 O -0.57 -9.69 12.54 -35.23 -0.44 -10.13 16 13 C 0.19 3.60 2.07 -67.89 -0.14 3.46 16 14 C -0.14 -2.48 5.30 -26.61 -0.14 -2.62 16 15 C 0.10 1.39 5.64 -3.71 -0.02 1.37 16 16 N -0.59 -9.01 2.97 -172.77 -0.51 -9.52 16 17 C 0.51 7.86 6.73 -10.98 -0.07 7.78 16 18 O -0.53 -9.34 14.69 5.56 0.08 -9.25 16 19 C 0.07 0.97 1.17 -90.20 -0.11 0.87 16 20 F -0.18 -2.52 15.37 2.25 0.03 -2.48 16 21 C -0.17 -1.92 6.52 -25.17 -0.16 -2.09 16 22 C 0.04 0.47 7.63 37.93 0.29 0.76 16 23 O -0.36 -4.82 11.65 -35.23 -0.41 -5.23 16 24 C 0.03 0.42 5.93 37.94 0.22 0.65 16 25 C 0.11 1.75 6.43 -3.71 -0.02 1.73 16 26 C -0.14 -2.40 5.30 -26.61 -0.14 -2.54 16 27 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.11 2.72 5.37 -51.93 -0.28 2.44 16 29 H 0.03 0.61 7.97 -51.93 -0.41 0.20 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.36 4.39 9.12 45.56 0.42 4.80 16 33 H 0.05 1.06 7.82 -51.93 -0.41 0.65 16 34 H 0.07 1.40 7.71 -51.93 -0.40 1.00 16 35 H 0.07 1.44 8.14 -51.92 -0.42 1.01 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.06 3.45 -51.93 -0.18 0.88 16 38 H 0.09 0.95 8.06 -51.93 -0.42 0.53 16 39 H 0.11 1.36 6.50 -51.92 -0.34 1.02 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.18 7.86 -51.94 -0.41 0.77 16 43 H 0.12 1.47 6.55 -51.93 -0.34 1.13 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.34 7.01 -51.93 -0.36 0.97 16 46 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 47 H 0.06 1.23 7.04 -51.93 -0.37 0.86 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -29.18 365.05 -7.14 -36.32 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.34 Total: 8.10 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.26 Total: 7.65 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.27 Total: -46.12 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.77 Total: -24.62 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.03 Total: -2.48 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.18 -7.14 -36.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098459642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.751 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds