Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47287 * 269.99993 * 3 2 1 5 5 H 1.48506 * 109.47032 * 29.99526 * 3 2 1 6 6 H 1.48500 * 109.47331 * 149.99759 * 3 2 1 7 7 C 1.38811 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00227 * 201.92741 * 7 2 1 9 9 N 1.36942 * 120.00175 * 21.92579 * 7 2 1 10 10 C 1.46503 * 119.99500 * 35.09625 * 9 7 2 11 11 C 1.53004 * 109.46958 * 92.19875 * 10 9 7 12 12 O 1.42894 * 109.47559 * 64.99804 * 11 10 9 13 13 C 1.46493 * 120.00471 * 215.09958 * 9 7 2 14 14 C 1.53042 * 109.45955 * 60.02194 * 13 9 7 15 15 C 1.53197 * 109.31301 * 178.59897 * 14 13 9 16 16 N 1.46927 * 108.76027 * 54.66136 * 15 14 13 17 17 C 1.34781 * 120.63137 * 126.40502 * 16 15 14 18 18 O 1.21277 * 120.00134 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99670 * 359.97301 * 17 16 15 20 20 F 1.39896 * 110.45687 * 57.39881 * 19 17 16 21 21 C 1.54512 * 110.51035 * 180.02562 * 19 17 16 22 22 C 1.54469 * 104.06408 * 118.64629 * 21 19 17 23 23 O 1.44427 * 104.80643 * 23.97975 * 22 21 19 24 24 C 1.44425 * 105.27119 * 319.48474 * 23 22 21 25 25 C 1.46929 * 118.74084 * 306.38221 * 16 15 14 26 26 C 1.53045 * 109.46072 * 299.97336 * 13 9 7 27 27 H 0.96996 * 119.99825 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47379 * 332.19299 * 10 9 7 29 29 H 1.09000 * 109.46782 * 212.19233 * 10 9 7 30 30 H 1.09005 * 109.46750 * 304.99591 * 11 10 9 31 31 H 1.09003 * 109.46907 * 184.99767 * 11 10 9 32 32 H 0.96693 * 114.00275 * 180.02562 * 12 11 10 33 33 H 1.08998 * 109.46540 * 179.97438 * 13 9 7 34 34 H 1.08993 * 109.50436 * 298.57307 * 14 13 9 35 35 H 1.09008 * 109.49561 * 58.67010 * 14 13 9 36 36 H 1.08999 * 109.60027 * 294.87219 * 15 14 13 37 37 H 1.09005 * 109.58294 * 174.43908 * 15 14 13 38 38 H 1.09002 * 110.50774 * 237.29755 * 21 19 17 39 39 H 1.09007 * 110.50963 * 359.97438 * 21 19 17 40 40 H 1.08999 * 110.37358 * 142.81169 * 22 21 19 41 41 H 1.09002 * 110.36957 * 265.14685 * 22 21 19 42 42 H 1.08989 * 110.37888 * 281.68157 * 24 23 22 43 43 H 1.09003 * 110.37102 * 159.34131 * 24 23 22 44 44 H 1.09000 * 109.58261 * 293.82546 * 25 16 15 45 45 H 1.08994 * 109.59101 * 173.40000 * 25 16 15 46 46 H 1.08999 * 109.49318 * 301.33926 * 26 13 9 47 47 H 1.08997 * 109.49463 * 61.39507 * 26 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0316 -1.2358 0.3498 9 7 1.3999 -2.3454 -0.4418 10 6 0.4428 -2.2833 -1.5492 11 6 1.1752 -2.5259 -2.8705 12 8 1.6915 -3.8582 -2.8913 13 6 1.7039 -3.6305 0.1924 14 6 1.3365 -3.5661 1.6767 15 6 1.6230 -4.9225 2.3288 16 7 3.0229 -5.2854 2.0691 17 6 3.8482 -5.6084 3.0845 18 8 5.0015 -5.9067 2.8570 19 6 3.3379 -5.5990 4.5024 20 9 2.2414 -6.4579 4.6331 21 6 4.4609 -6.0008 5.4846 22 6 4.6278 -4.7613 6.3913 23 8 3.3586 -4.0762 6.3171 24 6 2.9592 -4.1642 4.9319 25 6 3.5058 -5.2899 0.6815 26 6 3.1978 -3.9297 0.0478 27 1 -0.4850 0.8400 -0.0004 28 1 -0.0265 -1.2997 -1.5692 29 1 -0.3217 -3.0479 -1.4119 30 1 1.9971 -1.8162 -2.9659 31 1 0.4814 -2.3921 -3.7004 32 1 2.1696 -4.0821 -3.7014 33 1 1.1268 -4.4192 -0.2903 34 1 1.9309 -2.7944 2.1655 35 1 0.2773 -3.3299 1.7794 36 1 0.9642 -5.6793 1.9030 37 1 1.4568 -4.8533 3.4039 38 1 4.1611 -6.8675 6.0737 39 1 5.3852 -6.2066 4.9445 40 1 4.8348 -5.0666 7.4170 41 1 5.4268 -4.1217 6.0163 42 1 3.5022 -3.4332 4.3331 43 1 1.8842 -4.0109 4.8365 44 1 3.0005 -6.0768 0.1214 45 1 4.5818 -5.4634 0.6695 46 1 3.4636 -3.9521 -1.0091 47 1 3.7746 -3.1541 0.5515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098459642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = -164.171602 kcal Electronic energy + Delta-G solvation = -30975.343900 eV Core-core repulsion = 26686.883889 eV Total energy + Delta-G solvation = -4288.460011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.19605 -41.53840 -39.91861 -39.04592 -37.73026 -36.33103 -33.95857 -33.10854 -32.17236 -31.99383 -30.23419 -29.33917 -26.85749 -25.40143 -24.36664 -24.25453 -23.29375 -22.15862 -21.46595 -20.31034 -19.17170 -18.26706 -18.06628 -17.96470 -17.39869 -17.12341 -16.81740 -16.42850 -16.20611 -16.03040 -15.75934 -15.40872 -15.38373 -15.17898 -15.05037 -14.63462 -14.49723 -14.13210 -13.98195 -13.63709 -13.47928 -13.31011 -13.10376 -13.01731 -12.87941 -12.70223 -12.58429 -12.41211 -12.22829 -12.20136 -12.06129 -11.94959 -11.71480 -11.46906 -11.11316 -11.03085 -10.87530 -10.64910 -10.47589 -9.81305 -8.51082 -7.79045 -5.35206 1.13728 1.44365 1.49159 1.54693 1.65433 2.52282 2.64159 2.73692 3.12556 3.24915 3.26284 3.46318 3.56109 3.80181 3.85440 3.94867 4.05199 4.12237 4.19215 4.34144 4.40924 4.43328 4.44962 4.59324 4.60180 4.67174 4.69333 4.73152 4.73964 4.80975 4.85229 4.86869 4.94729 5.07820 5.19386 5.35346 5.35642 5.49539 5.59966 5.64542 5.70753 5.81695 6.15008 6.50881 6.75097 7.10917 7.22651 7.93492 8.46283 9.17642 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.004201 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.183353 B = 6662.903193 C = 7803.125087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.034 4.034 3 Si 0.943 3.057 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.050 0.950 9 N -0.585 5.585 10 C 0.144 3.856 11 C 0.070 3.930 12 O -0.575 6.575 13 C 0.185 3.815 14 C -0.128 4.128 15 C 0.106 3.894 16 N -0.590 5.590 17 C 0.504 3.496 18 O -0.553 6.553 19 C 0.073 3.927 20 F -0.183 7.183 21 C -0.166 4.166 22 C 0.042 3.958 23 O -0.376 6.376 24 C 0.034 3.966 25 C 0.120 3.880 26 C -0.120 4.120 27 H 0.250 0.750 28 H 0.082 0.918 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.381 0.619 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -11.937 5.280 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.231 4.231 3 Si 0.773 3.227 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.067 0.933 9 N -0.304 5.304 10 C 0.018 3.982 11 C -0.010 4.010 12 O -0.381 6.381 13 C 0.078 3.922 14 C -0.168 4.168 15 C -0.016 4.016 16 N -0.321 5.321 17 C 0.290 3.710 18 O -0.433 6.433 19 C 0.052 3.948 20 F -0.163 7.163 21 C -0.204 4.204 22 C -0.034 4.034 23 O -0.295 6.295 24 C -0.044 4.044 25 C -0.002 4.002 26 C -0.160 4.160 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.228 0.772 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.165 -11.885 5.914 14.245 hybrid contribution 0.417 1.272 -1.018 1.681 sum 5.582 -10.613 4.897 12.953 Atomic orbital electron populations 1.70059 1.06311 1.25723 1.53920 1.25571 0.95517 1.00634 1.01345 0.85650 0.78413 0.81220 0.77449 1.21398 1.22323 1.20244 1.19017 0.93855 0.86672 1.37735 0.93269 1.43916 1.49465 1.02579 1.34481 1.21008 0.90763 1.01141 0.85300 1.22775 0.96445 0.82914 0.98828 1.86491 1.75955 1.30930 1.44774 1.20336 0.93424 0.87694 0.90734 1.22209 1.01100 0.95284 0.98195 1.22148 0.80475 0.97023 1.01977 1.48235 1.11922 1.64849 1.07105 1.20678 0.85858 0.77406 0.87083 1.90655 1.18369 1.49854 1.84376 1.22488 0.86298 0.92068 0.93986 1.92919 1.55074 1.71612 1.96697 1.23568 0.98630 1.01461 0.96704 1.23714 0.85980 0.91209 1.02519 1.89191 1.38043 1.77696 1.24580 1.24140 1.03585 0.92389 0.84274 1.21705 1.00640 0.98046 0.79797 1.22090 0.98425 0.94923 1.00525 0.94033 0.90019 0.95583 0.95701 0.93709 0.77210 0.92457 0.93430 0.92155 0.89303 0.88771 0.86965 0.87247 0.85247 0.90977 0.90474 0.85982 0.89614 0.89828 0.90786 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.19 11.36 21.65 0.25 -49.95 16 2 C -0.03 -1.76 4.95 84.86 0.42 -1.34 16 3 Si 0.94 43.11 29.61 68.60 2.03 45.14 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.24 -12.31 8.26 84.03 0.69 -11.61 16 8 H 0.05 2.59 6.87 -2.91 -0.02 2.57 16 9 N -0.58 -26.66 2.36 -677.88 -1.60 -28.26 16 10 C 0.14 6.38 5.65 86.38 0.49 6.87 16 11 C 0.07 2.56 7.39 71.98 0.53 3.09 16 12 O -0.58 -18.40 12.54 -148.98 -1.87 -20.27 16 13 C 0.18 7.06 2.07 45.02 0.09 7.16 16 14 C -0.13 -4.57 5.30 30.67 0.16 -4.40 16 15 C 0.11 2.95 5.64 86.36 0.49 3.43 16 16 N -0.59 -17.28 2.97 -818.90 -2.43 -19.72 16 17 C 0.50 14.97 6.73 87.66 0.59 15.56 16 18 O -0.55 -18.76 14.69 -3.02 -0.04 -18.80 16 19 C 0.07 1.84 1.17 -10.52 -0.01 1.83 16 20 F -0.18 -4.64 15.37 44.97 0.69 -3.95 16 21 C -0.17 -3.39 6.52 31.61 0.21 -3.19 16 22 C 0.04 0.78 7.63 72.48 0.55 1.34 16 23 O -0.38 -9.40 11.65 -148.98 -1.74 -11.14 16 24 C 0.03 0.85 5.93 72.49 0.43 1.28 16 25 C 0.12 3.55 6.43 86.36 0.56 4.10 16 26 C -0.12 -4.19 5.30 30.67 0.16 -4.03 16 27 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 28 H 0.08 4.14 5.37 -2.39 -0.01 4.12 16 29 H 0.03 1.13 7.97 -2.39 -0.02 1.11 16 30 H 0.02 0.97 8.14 -2.38 -0.02 0.96 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.38 8.31 9.12 -74.06 -0.68 7.64 16 33 H 0.06 2.16 7.82 -2.39 -0.02 2.15 16 34 H 0.05 1.91 7.71 -2.39 -0.02 1.89 16 35 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.09 2.37 3.45 -2.38 -0.01 2.36 16 38 H 0.11 1.91 8.06 -2.39 -0.02 1.89 16 39 H 0.11 2.41 6.50 -2.38 -0.02 2.39 16 40 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 2.08 7.86 -2.39 -0.02 2.06 16 43 H 0.12 2.92 6.55 -2.39 -0.02 2.90 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.08 2.53 7.01 -2.39 -0.02 2.52 16 46 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 47 H 0.04 1.48 7.04 -2.39 -0.02 1.47 16 Total: -1.00 -62.50 365.05 0.97 -61.53 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.32 Total: 25.32 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 5.36 Total: 20.08 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -3.79 Total: -97.93 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -3.65 Total: -50.21 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.69 Total: -3.95 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -62.50 0.97 -61.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098459642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.638 kcal (2) G-P(sol) polarization free energy of solvation -62.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds