Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47363 * 2 1 4 4 C 1.53003 * 109.46670 * 119.99485 * 2 1 3 5 5 C 1.53001 * 109.46899 * 65.00467 * 4 2 1 6 6 N 1.46910 * 109.47153 * 179.97438 * 5 4 2 7 7 C 1.46842 * 110.99703 * 66.04611 * 6 5 4 8 8 C 1.53039 * 109.52266 * 174.16402 * 7 6 5 9 9 C 1.53123 * 109.31189 * 59.15550 * 8 7 6 10 10 H 1.09000 * 109.52057 * 62.27355 * 9 8 7 11 11 N 1.46494 * 109.52258 * 182.46297 * 9 8 7 12 12 C 1.34771 * 120.00167 * 274.99905 * 11 9 8 13 13 O 1.21282 * 119.99785 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00327 * 179.97438 * 12 11 9 15 15 S 1.80998 * 109.47519 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00272 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99993 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00246 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00396 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99726 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46740 * 90.00273 * 20 18 16 22 22 H 1.48497 * 109.46921 * 210.00083 * 20 18 16 23 23 H 1.48496 * 109.46968 * 330.00191 * 20 18 16 24 24 C 1.53129 * 109.15931 * 302.40768 * 9 8 7 25 25 H 1.09000 * 109.46579 * 297.65836 * 24 9 8 26 26 O 1.42891 * 109.53549 * 177.57662 * 24 9 8 27 27 C 1.46849 * 110.99768 * 301.83691 * 6 5 4 28 28 H 1.09004 * 109.47254 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47994 * 300.00473 * 1 2 3 30 30 H 1.09008 * 109.46567 * 60.00664 * 1 2 3 31 31 H 1.09002 * 109.47337 * 239.99407 * 2 1 3 32 32 H 1.09002 * 109.47695 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46910 * 299.99718 * 3 2 1 34 34 H 1.09002 * 109.47378 * 59.99432 * 3 2 1 35 35 H 1.08995 * 109.47598 * 305.00435 * 4 2 1 36 36 H 1.09001 * 109.47530 * 185.00076 * 4 2 1 37 37 H 1.08996 * 109.47577 * 60.00138 * 5 4 2 38 38 H 1.09002 * 109.47116 * 299.99247 * 5 4 2 39 39 H 1.08995 * 109.46659 * 54.14295 * 7 6 5 40 40 H 1.09002 * 109.45412 * 294.16581 * 7 6 5 41 41 H 1.09002 * 109.50563 * 179.11883 * 8 7 6 42 42 H 1.09003 * 109.50107 * 299.19864 * 8 7 6 43 43 H 0.97006 * 120.00026 * 95.00382 * 11 9 8 44 44 H 1.08997 * 109.47077 * 300.00437 * 14 12 11 45 45 H 1.09005 * 109.47173 * 59.99965 * 14 12 11 46 46 H 0.97000 * 120.00065 * 179.97438 * 19 18 16 47 47 H 0.96707 * 113.99579 * 180.14103 * 26 24 9 48 48 H 1.09001 * 109.46071 * 305.85100 * 27 6 5 49 49 H 1.09002 * 109.46350 * 65.83217 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1881 6 7 2.1252 -2.8880 2.3874 7 6 1.4522 -2.3908 3.5941 8 6 1.8787 -3.2307 4.8003 9 6 3.3982 -3.1419 4.9673 10 1 3.6830 -2.1088 5.1665 11 7 3.8183 -3.9909 6.0848 12 6 3.7822 -3.5134 7.3446 13 8 3.4016 -2.3809 7.5531 14 6 4.2138 -4.3869 8.4942 15 16 4.0510 -3.4676 10.0449 16 6 4.6065 -4.6905 11.1854 17 1 4.9137 -5.6622 10.8281 18 6 4.6482 -4.4053 12.5431 19 7 5.0627 -5.3189 13.3952 20 14 4.1160 -2.7246 13.1612 21 1 2.6623 -2.7460 13.4633 22 1 4.8729 -2.3881 14.3937 23 1 4.3899 -1.7041 12.1179 24 6 4.0742 -3.6190 3.6788 25 1 3.8207 -4.6642 3.5012 26 8 5.4913 -3.4864 3.8053 27 6 3.5840 -2.7679 2.5052 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6052 -0.2617 2.1370 36 1 3.1262 -0.6443 1.2954 37 1 2.0698 -2.6550 0.3005 38 1 0.5488 -2.2723 1.1422 39 1 0.3725 -2.4640 3.4641 40 1 1.7283 -1.3496 3.7608 41 1 1.3911 -2.8515 5.6984 42 1 1.5903 -4.2696 4.6406 43 1 4.1224 -4.8968 5.9181 44 1 3.5841 -5.2758 8.5314 45 1 5.2533 -4.6837 8.3548 46 1 5.0921 -5.1194 14.3440 47 1 5.9841 -3.7691 3.0227 48 1 4.0526 -3.1150 1.5843 49 1 3.8498 -1.7248 2.6772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099687761.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = -103.591209 kcal Electronic energy + Delta-G solvation = -26377.998870 eV Core-core repulsion = 22658.378998 eV Total energy + Delta-G solvation = -3719.619872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38898 -38.90317 -37.45014 -36.00607 -34.61360 -32.41059 -32.00361 -30.10346 -29.49544 -27.93527 -27.58467 -25.59655 -24.76385 -23.43098 -22.15118 -20.82925 -20.36787 -19.70139 -17.84581 -17.64231 -16.73792 -16.42244 -15.96734 -15.56336 -15.43867 -15.07414 -14.93724 -14.72422 -14.40060 -14.11972 -13.76957 -13.71136 -13.42658 -13.27440 -13.08966 -12.87170 -12.76673 -12.68633 -12.42175 -12.32847 -12.03115 -11.67526 -11.58425 -11.34472 -11.31495 -11.23553 -11.10514 -10.98332 -10.84026 -10.71288 -10.50235 -10.34345 -9.82527 -9.43743 -8.98389 -8.90419 -8.65616 -8.46089 -6.87789 -6.25973 -3.97134 2.80228 3.04176 3.32246 3.35925 3.39747 3.53184 3.68388 3.92241 4.30744 4.35959 4.36476 4.42062 4.51176 4.61562 4.74313 4.76838 4.83654 4.90008 4.95544 5.01700 5.13012 5.14991 5.19534 5.20900 5.24899 5.34334 5.36461 5.38469 5.44978 5.45826 5.53005 5.58089 5.62298 5.65894 5.77025 5.82875 5.87594 5.90206 5.94668 6.06595 6.09945 6.60596 6.61898 6.66459 7.35107 7.69553 7.97186 8.44911 8.56710 9.20312 10.83264 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.002169 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.939579 B =12903.797265 C =13464.907398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.157 4.157 5 C 0.055 3.945 6 N -0.533 5.533 7 C 0.054 3.946 8 C -0.127 4.127 9 C 0.157 3.843 10 H 0.090 0.910 11 N -0.724 5.724 12 C 0.534 3.466 13 O -0.522 6.522 14 C -0.123 4.123 15 S -0.142 6.142 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.235 1.235 24 C 0.101 3.899 25 H 0.069 0.931 26 O -0.556 6.556 27 C 0.025 3.975 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.400 0.600 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.270 0.730 47 H 0.377 0.623 48 H 0.079 0.921 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 5.851 -31.325 32.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.196 4.196 5 C -0.073 4.073 6 N -0.257 5.257 7 C -0.074 4.074 8 C -0.166 4.166 9 C 0.051 3.949 10 H 0.108 0.892 11 N -0.377 5.377 12 C 0.320 3.680 13 O -0.397 6.397 14 C -0.274 4.274 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.114 4.114 19 N -0.518 5.518 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C 0.041 3.959 25 H 0.087 0.913 26 O -0.360 6.360 27 C -0.104 4.104 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.234 0.766 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.224 0.776 48 H 0.097 0.903 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.362 7.401 -30.206 31.959 hybrid contribution 0.801 -0.551 -0.325 1.025 sum -6.561 6.850 -30.530 31.970 Atomic orbital electron populations 1.21905 0.95160 1.01880 1.01788 1.21038 0.95953 0.96174 0.97982 1.21853 1.00940 0.96032 1.01793 1.22362 1.01440 0.97140 0.98627 1.22304 1.01013 0.91285 0.92712 1.62165 1.04163 1.56282 1.03103 1.22132 0.99151 0.97059 0.89094 1.21998 0.94928 1.01569 0.98087 1.20863 0.93046 0.96640 0.84312 0.89237 1.45846 1.68836 1.17361 1.05658 1.20252 0.76874 0.87669 0.83238 1.90684 1.45761 1.19068 1.84188 1.23272 1.04938 1.02164 0.97003 1.84760 1.87356 1.22565 0.96926 1.22327 1.50535 1.00797 0.93130 0.89397 1.24716 0.93612 0.97406 0.95628 1.69940 1.45086 1.33781 1.02947 0.86730 0.79716 0.85088 0.80284 1.19240 1.19984 1.15921 1.22041 0.81111 0.98883 0.93868 0.91302 1.86654 1.16996 1.89215 1.43162 1.22786 0.88981 0.99788 0.98795 0.92374 0.92666 0.92805 0.91262 0.92780 0.92722 0.92675 0.91540 0.91666 0.90685 0.90178 0.90069 0.94026 0.89770 0.90576 0.76625 0.88555 0.88463 0.91984 0.77573 0.90254 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.95 37.16 0.33 -0.45 16 2 C -0.09 -0.51 2.92 -90.62 -0.26 -0.77 16 3 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 4 C -0.16 -0.98 3.98 -26.73 -0.11 -1.09 16 5 C 0.05 0.34 5.11 -3.82 -0.02 0.32 16 6 N -0.53 -4.13 4.86 -234.66 -1.14 -5.27 16 7 C 0.05 0.48 5.05 -3.84 -0.02 0.46 16 8 C -0.13 -1.36 5.67 -26.65 -0.15 -1.52 16 9 C 0.16 1.91 2.20 -67.80 -0.15 1.76 16 10 H 0.09 1.34 7.59 -51.93 -0.39 0.95 16 11 N -0.72 -9.94 5.00 -53.68 -0.27 -10.21 16 12 C 0.53 9.84 7.81 -10.99 -0.09 9.76 16 13 O -0.52 -11.50 15.53 5.56 0.09 -11.42 16 14 C -0.12 -2.46 6.16 36.01 0.22 -2.24 16 15 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 16 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 17 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 18 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.86 13.97 55.49 0.78 -26.08 16 20 Si 0.86 22.09 27.74 -169.99 -4.72 17.37 16 21 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 24 C 0.10 0.92 3.13 -26.65 -0.08 0.84 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 O -0.56 -5.40 13.24 -35.23 -0.47 -5.86 16 27 C 0.03 0.20 4.46 -3.83 -0.02 0.18 16 28 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.49 6.68 -51.93 -0.35 0.15 16 36 H 0.06 0.45 6.50 -51.93 -0.34 0.11 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.48 6.49 -51.93 -0.34 0.14 16 39 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 40 H 0.04 0.40 6.76 -51.93 -0.35 0.05 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.40 4.51 8.60 -40.82 -0.35 4.16 16 44 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.10 1.84 8.14 -51.91 -0.42 1.42 16 46 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.38 1.90 9.08 45.56 0.41 2.31 16 48 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 49 H 0.05 0.43 6.61 -51.93 -0.34 0.09 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -34.71 395.11 -9.43 -44.14 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.88 Total: 2.53 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 0.21 Total: -5.47 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.63 Total: -41.56 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.38 Total: -17.28 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.72 Total: 17.37 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.71 -9.43 -44.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687761.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.451 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds