Wall clock time and date at job start Tue Mar 31 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47363 * 2 1 4 4 C 1.53003 * 109.46670 * 119.99485 * 2 1 3 5 5 C 1.53001 * 109.46899 * 65.00467 * 4 2 1 6 6 N 1.46910 * 109.47153 * 179.97438 * 5 4 2 7 7 C 1.46842 * 110.99703 * 66.04611 * 6 5 4 8 8 C 1.53039 * 109.52266 * 174.16402 * 7 6 5 9 9 C 1.53123 * 109.31189 * 59.15550 * 8 7 6 10 10 H 1.09000 * 109.52057 * 62.27355 * 9 8 7 11 11 N 1.46494 * 109.52258 * 182.46297 * 9 8 7 12 12 C 1.34771 * 120.00167 * 274.99905 * 11 9 8 13 13 O 1.21282 * 119.99785 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00327 * 179.97438 * 12 11 9 15 15 S 1.80998 * 109.47519 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00272 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99993 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00246 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00396 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99726 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46740 * 90.00273 * 20 18 16 22 22 H 1.48497 * 109.46921 * 210.00083 * 20 18 16 23 23 H 1.48496 * 109.46968 * 330.00191 * 20 18 16 24 24 C 1.53129 * 109.15931 * 302.40768 * 9 8 7 25 25 H 1.09000 * 109.46579 * 297.65836 * 24 9 8 26 26 O 1.42891 * 109.53549 * 177.57662 * 24 9 8 27 27 C 1.46849 * 110.99768 * 301.83691 * 6 5 4 28 28 H 1.09004 * 109.47254 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47994 * 300.00473 * 1 2 3 30 30 H 1.09008 * 109.46567 * 60.00664 * 1 2 3 31 31 H 1.09002 * 109.47337 * 239.99407 * 2 1 3 32 32 H 1.09002 * 109.47695 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46910 * 299.99718 * 3 2 1 34 34 H 1.09002 * 109.47378 * 59.99432 * 3 2 1 35 35 H 1.08995 * 109.47598 * 305.00435 * 4 2 1 36 36 H 1.09001 * 109.47530 * 185.00076 * 4 2 1 37 37 H 1.08996 * 109.47577 * 60.00138 * 5 4 2 38 38 H 1.09002 * 109.47116 * 299.99247 * 5 4 2 39 39 H 1.08995 * 109.46659 * 54.14295 * 7 6 5 40 40 H 1.09002 * 109.45412 * 294.16581 * 7 6 5 41 41 H 1.09002 * 109.50563 * 179.11883 * 8 7 6 42 42 H 1.09003 * 109.50107 * 299.19864 * 8 7 6 43 43 H 0.97006 * 120.00026 * 95.00382 * 11 9 8 44 44 H 1.08997 * 109.47077 * 300.00437 * 14 12 11 45 45 H 1.09005 * 109.47173 * 59.99965 * 14 12 11 46 46 H 0.97000 * 120.00065 * 179.97438 * 19 18 16 47 47 H 0.96707 * 113.99579 * 180.14103 * 26 24 9 48 48 H 1.09001 * 109.46071 * 305.85100 * 27 6 5 49 49 H 1.09002 * 109.46350 * 65.83217 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1881 6 7 2.1252 -2.8880 2.3874 7 6 1.4522 -2.3908 3.5941 8 6 1.8787 -3.2307 4.8003 9 6 3.3982 -3.1419 4.9673 10 1 3.6830 -2.1088 5.1665 11 7 3.8183 -3.9909 6.0848 12 6 3.7822 -3.5134 7.3446 13 8 3.4016 -2.3809 7.5531 14 6 4.2138 -4.3869 8.4942 15 16 4.0510 -3.4676 10.0449 16 6 4.6065 -4.6905 11.1854 17 1 4.9137 -5.6622 10.8281 18 6 4.6482 -4.4053 12.5431 19 7 5.0627 -5.3189 13.3952 20 14 4.1160 -2.7246 13.1612 21 1 2.6623 -2.7460 13.4633 22 1 4.8729 -2.3881 14.3937 23 1 4.3899 -1.7041 12.1179 24 6 4.0742 -3.6190 3.6788 25 1 3.8207 -4.6642 3.5012 26 8 5.4913 -3.4864 3.8053 27 6 3.5840 -2.7679 2.5052 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6052 -0.2617 2.1370 36 1 3.1262 -0.6443 1.2954 37 1 2.0698 -2.6550 0.3005 38 1 0.5488 -2.2723 1.1422 39 1 0.3725 -2.4640 3.4641 40 1 1.7283 -1.3496 3.7608 41 1 1.3911 -2.8515 5.6984 42 1 1.5903 -4.2696 4.6406 43 1 4.1224 -4.8968 5.9181 44 1 3.5841 -5.2758 8.5314 45 1 5.2533 -4.6837 8.3548 46 1 5.0921 -5.1194 14.3440 47 1 5.9841 -3.7691 3.0227 48 1 4.0526 -3.1150 1.5843 49 1 3.8498 -1.7248 2.6772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099687761.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:11 Heat of formation + Delta-G solvation = -130.739300 kcal Electronic energy + Delta-G solvation = -26379.176099 eV Core-core repulsion = 22658.378998 eV Total energy + Delta-G solvation = -3720.797102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33631 -40.04906 -38.14931 -36.63493 -35.69614 -34.67786 -33.04002 -30.94617 -30.63803 -28.77640 -28.01791 -27.84859 -25.52705 -24.18624 -22.87569 -21.74310 -21.41401 -20.43949 -19.81053 -18.37724 -17.89140 -17.80996 -17.10524 -16.61346 -16.47883 -16.35017 -15.93878 -15.79668 -15.48719 -15.13579 -14.98419 -14.73887 -14.49336 -14.41616 -14.04770 -13.96380 -13.67831 -13.41213 -13.35183 -13.15659 -13.09586 -13.01317 -12.79865 -12.71049 -12.44195 -12.17381 -12.06512 -11.89683 -11.81979 -11.61122 -11.42292 -11.32351 -11.17681 -11.10720 -10.86877 -10.54712 -10.14626 -9.28879 -9.00417 -8.52004 -6.22891 0.97667 1.30540 1.45970 1.54538 1.56046 2.19037 2.25353 2.70864 2.76335 2.85961 3.19871 3.64992 3.78668 3.85858 3.90892 3.94037 3.99036 4.06591 4.13371 4.22037 4.24296 4.34103 4.39511 4.45861 4.49793 4.62106 4.69994 4.70683 4.75670 4.78725 4.81655 4.87407 4.94091 4.99796 5.04207 5.11779 5.15449 5.19688 5.31149 5.43937 5.45093 5.49714 5.70359 5.99119 6.04875 6.10866 6.45501 6.87364 6.93002 7.18647 8.60372 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.002169 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.939579 B =12903.797265 C =13464.907398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.151 4.151 5 C 0.057 3.943 6 N -0.531 5.531 7 C 0.060 3.940 8 C -0.120 4.120 9 C 0.152 3.848 10 H 0.057 0.943 11 N -0.702 5.702 12 C 0.537 3.463 13 O -0.564 6.564 14 C -0.110 4.110 15 S -0.175 6.175 16 C -0.529 4.529 17 H 0.062 0.938 18 C 0.045 3.955 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.261 1.261 22 H -0.258 1.258 23 H -0.239 1.239 24 C 0.111 3.889 25 H 0.087 0.913 26 O -0.577 6.577 27 C 0.030 3.970 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.415 0.585 44 H 0.115 0.885 45 H 0.110 0.890 46 H 0.277 0.723 47 H 0.399 0.601 48 H 0.105 0.895 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 5.620 -33.888 35.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.190 4.190 5 C -0.070 4.070 6 N -0.256 5.256 7 C -0.069 4.069 8 C -0.159 4.159 9 C 0.047 3.953 10 H 0.075 0.925 11 N -0.354 5.354 12 C 0.322 3.678 13 O -0.442 6.442 14 C -0.261 4.261 15 S 0.051 5.949 16 C -0.677 4.677 17 H 0.080 0.920 18 C -0.160 4.160 19 N -0.554 5.554 20 Si 0.737 3.263 21 H -0.186 1.186 22 H -0.182 1.182 23 H -0.163 1.163 24 C 0.051 3.949 25 H 0.105 0.895 26 O -0.385 6.385 27 C -0.099 4.099 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.252 0.748 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.087 0.913 47 H 0.249 0.751 48 H 0.123 0.877 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.759 7.128 -32.826 34.475 hybrid contribution 0.967 -0.553 0.319 1.158 sum -6.792 6.576 -32.507 33.853 Atomic orbital electron populations 1.21896 0.94890 1.02244 1.01602 1.21026 0.96133 0.95862 0.97848 1.21863 1.00840 0.96359 1.01663 1.22288 1.00913 0.97392 0.98377 1.22354 1.01448 0.90898 0.92329 1.62191 1.04114 1.56284 1.02978 1.22042 0.99926 0.95950 0.88973 1.21892 0.93553 1.02458 0.97982 1.21040 0.94472 0.94734 0.85015 0.92509 1.45662 1.67100 1.18140 1.04499 1.19958 0.76777 0.86792 0.84240 1.90674 1.48013 1.20644 1.84886 1.23257 1.06344 1.02130 0.94359 1.84693 1.87280 1.23133 0.99749 1.22457 1.50334 1.00618 0.94255 0.91964 1.25567 0.93663 1.00892 0.95903 1.70013 1.46099 1.35668 1.03602 0.85861 0.79736 0.80672 0.80057 1.18584 1.18245 1.16252 1.21930 0.80928 0.99852 0.92203 0.89520 1.86601 1.17307 1.89589 1.45022 1.22771 0.89067 0.98830 0.99191 0.91727 0.93526 0.92345 0.90320 0.92951 0.92079 0.93591 0.93117 0.92249 0.89262 0.89625 0.88904 0.95239 0.92351 0.89360 0.74804 0.86723 0.87160 0.91347 0.75084 0.87688 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.95 71.98 0.64 -0.68 16 2 C -0.09 -0.84 2.92 -10.79 -0.03 -0.87 16 3 C -0.15 -1.58 9.19 71.98 0.66 -0.92 16 4 C -0.15 -1.69 3.98 30.60 0.12 -1.57 16 5 C 0.06 0.56 5.11 86.30 0.44 1.01 16 6 N -0.53 -6.99 4.86 -896.34 -4.35 -11.35 16 7 C 0.06 0.99 5.05 86.33 0.44 1.42 16 8 C -0.12 -2.48 5.67 30.65 0.17 -2.31 16 9 C 0.15 3.58 2.20 45.08 0.10 3.68 16 10 H 0.06 1.74 7.59 -2.39 -0.02 1.72 16 11 N -0.70 -18.39 5.00 -442.15 -2.21 -20.60 16 12 C 0.54 19.58 7.81 87.66 0.68 20.26 16 13 O -0.56 -25.19 15.53 -3.04 -0.05 -25.23 16 14 C -0.11 -4.33 6.16 71.24 0.44 -3.89 16 15 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16 16 C -0.53 -31.38 10.04 67.95 0.68 -30.70 16 17 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 18 C 0.05 2.69 5.50 84.86 0.47 3.16 16 19 N -0.92 -56.36 13.97 21.65 0.30 -56.06 16 20 Si 0.91 45.75 27.74 68.60 1.90 47.65 16 21 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 24 C 0.11 1.76 3.13 30.65 0.10 1.86 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 O -0.58 -9.91 13.24 -148.98 -1.97 -11.88 16 27 C 0.03 0.39 4.46 86.32 0.38 0.78 16 28 H 0.06 0.49 6.57 -2.39 -0.02 0.47 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.74 6.68 -2.39 -0.02 0.72 16 36 H 0.06 0.74 6.50 -2.39 -0.02 0.73 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.79 6.49 -2.39 -0.02 0.77 16 39 H 0.09 1.33 8.06 -2.39 -0.02 1.31 16 40 H 0.03 0.56 6.76 -2.39 -0.02 0.55 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.42 8.40 8.60 -92.70 -0.80 7.60 16 44 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 45 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 46 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 47 H 0.40 2.85 9.08 -74.05 -0.67 2.18 16 48 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 49 H 0.04 0.58 6.61 -2.39 -0.02 0.56 16 Total: -1.00 -75.92 395.11 -2.69 -78.61 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -0.56 Total: 17.79 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.30 Total: -8.78 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -6.26 Total: -88.01 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -2.02 Total: -37.11 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal Total: -75.92 -2.69 -78.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687761.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.128 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds