Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46983 * 2 1 4 4 C 1.52995 * 109.47587 * 120.00153 * 2 1 3 5 5 C 1.53000 * 109.47411 * 174.99845 * 4 2 1 6 6 N 1.46902 * 109.47116 * 180.02562 * 5 4 2 7 7 C 1.46845 * 111.00081 * 65.78955 * 6 5 4 8 8 C 1.53173 * 109.55435 * 185.83905 * 7 6 5 9 9 C 1.53119 * 109.21042 * 300.86076 * 8 7 6 10 10 H 1.08998 * 109.52156 * 177.55857 * 9 8 7 11 11 N 1.46500 * 109.52279 * 297.68945 * 9 8 7 12 12 C 1.34769 * 120.00241 * 274.87498 * 11 9 8 13 13 O 1.21282 * 119.99850 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00466 * 179.97438 * 12 11 9 15 15 S 1.81000 * 109.47238 * 179.97438 * 14 12 11 16 16 C 1.76205 * 99.99610 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99527 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00398 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99780 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47287 * 90.00177 * 20 18 16 22 22 H 1.48500 * 109.47266 * 210.00229 * 20 18 16 23 23 H 1.48498 * 109.47178 * 329.99930 * 20 18 16 24 24 C 1.53118 * 109.21170 * 57.62845 * 9 8 7 25 25 H 1.08998 * 109.50810 * 62.24918 * 24 9 8 26 26 O 1.42893 * 109.50328 * 182.37602 * 24 9 8 27 27 C 1.46844 * 110.99945 * 190.00166 * 6 5 4 28 28 H 1.09004 * 109.47311 * 299.99703 * 1 2 3 29 29 H 1.09001 * 109.47313 * 59.99723 * 1 2 3 30 30 H 1.09002 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47311 * 240.00297 * 2 1 3 32 32 H 1.08996 * 109.47236 * 60.00508 * 3 2 1 33 33 H 1.08999 * 109.46998 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46948 * 300.00161 * 3 2 1 35 35 H 1.09003 * 109.47127 * 54.99488 * 4 2 1 36 36 H 1.09005 * 109.47320 * 295.00585 * 4 2 1 37 37 H 1.09003 * 109.46997 * 60.00207 * 5 4 2 38 38 H 1.08999 * 109.47384 * 299.99939 * 5 4 2 39 39 H 1.09002 * 109.46472 * 305.85546 * 7 6 5 40 40 H 1.09002 * 109.46085 * 65.83445 * 7 6 5 41 41 H 1.09004 * 109.58345 * 180.91065 * 8 7 6 42 42 H 1.09004 * 109.49061 * 60.75398 * 8 7 6 43 43 H 0.97003 * 119.99532 * 94.86907 * 11 9 8 44 44 H 1.09004 * 109.46923 * 59.99646 * 14 12 11 45 45 H 1.09004 * 109.46818 * 300.00196 * 14 12 11 46 46 H 0.97006 * 120.00587 * 179.97438 * 19 18 16 47 47 H 0.96705 * 114.00404 * 179.97438 * 26 24 9 48 48 H 1.09002 * 109.46481 * 54.14867 * 27 6 5 49 49 H 1.08999 * 109.45703 * 294.16861 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5649 -0.8310 1.1878 6 7 4.0545 -1.5241 2.3869 7 6 3.5991 -2.9200 2.4108 8 6 4.0029 -3.5683 3.7385 9 6 5.5255 -3.5046 3.8878 10 1 5.8150 -3.9256 4.8506 11 7 6.1556 -4.2700 2.8093 12 6 6.3309 -5.5998 2.9401 13 8 5.9674 -6.1629 3.9509 14 6 6.9786 -6.3874 1.8304 15 16 7.0714 -8.1320 2.3033 16 6 7.8459 -8.7974 0.8673 17 1 8.1075 -8.1480 0.0449 18 6 8.1209 -10.1558 0.7936 19 7 7.8026 -10.9471 1.7961 20 14 8.9427 -10.8612 -0.7285 21 1 10.4172 -10.8250 -0.5567 22 1 8.5014 -12.2656 -0.9235 23 1 8.5626 -10.0537 -1.9154 24 6 5.9786 -2.0440 3.8111 25 1 5.5403 -1.4831 4.6366 26 8 7.4037 -1.9816 3.8943 27 6 5.5175 -1.4411 2.4821 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6054 -1.7198 1.2951 36 1 1.7516 -0.1584 2.1370 37 1 3.9995 0.1675 1.1419 38 1 3.8532 -1.3940 0.3001 39 1 2.5145 -2.9500 2.3074 40 1 4.0578 -3.4658 1.5863 41 1 3.6793 -4.6091 3.7502 42 1 3.5336 -3.0314 4.5630 43 1 6.4466 -3.8196 2.0009 44 1 7.9840 -6.0054 1.6527 45 1 6.3862 -6.2880 0.9208 46 1 7.9944 -11.8966 1.7444 47 1 7.7614 -1.0841 3.8517 48 1 5.8262 -0.3970 2.4306 49 1 5.9670 -1.9939 1.6572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099687762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = -101.832005 kcal Electronic energy + Delta-G solvation = -26557.967396 eV Core-core repulsion = 22838.423808 eV Total energy + Delta-G solvation = -3719.543587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41950 -38.55281 -37.40837 -36.02277 -34.38400 -32.40879 -31.78626 -30.27535 -29.35426 -28.00770 -27.53234 -25.47201 -24.63861 -23.42407 -21.97075 -20.98816 -20.25926 -19.17091 -17.90731 -17.51036 -16.68273 -16.07572 -16.01748 -15.74780 -15.27569 -15.15221 -14.78930 -14.68660 -14.25522 -14.12146 -13.95324 -13.70217 -13.36699 -13.16801 -13.00959 -12.70528 -12.63459 -12.55901 -12.26422 -12.16552 -11.98901 -11.71836 -11.47980 -11.35962 -11.08104 -11.04558 -11.00427 -10.99775 -10.76687 -10.69873 -10.59198 -10.19523 -9.78730 -9.31685 -9.04978 -8.85809 -8.60989 -8.20377 -6.46816 -6.19517 -3.89548 3.06855 3.17038 3.23574 3.29026 3.32813 3.40264 3.77762 3.95252 4.22562 4.35190 4.48487 4.53142 4.58294 4.59714 4.83141 4.90600 4.93020 5.00425 5.10488 5.15444 5.17639 5.23742 5.25198 5.27310 5.31411 5.41650 5.46579 5.49906 5.54727 5.60118 5.65168 5.67245 5.70372 5.78184 5.82777 5.92933 5.95515 6.02311 6.02958 6.06285 6.18019 6.67768 6.71572 6.75103 7.39245 7.61516 7.78067 8.37310 8.69216 9.25686 10.87880 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.002443 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.157195 B =11460.908012 C =12488.182860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.112 4.112 5 C 0.055 3.945 6 N -0.534 5.534 7 C 0.051 3.949 8 C -0.126 4.126 9 C 0.155 3.845 10 H 0.095 0.905 11 N -0.725 5.725 12 C 0.534 3.466 13 O -0.519 6.519 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.273 1.273 24 C 0.102 3.898 25 H 0.077 0.923 26 O -0.555 6.555 27 C 0.024 3.976 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.394 0.606 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.268 0.732 47 H 0.377 0.623 48 H 0.077 0.923 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.667 27.401 -1.700 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.073 4.073 6 N -0.260 5.260 7 C -0.077 4.077 8 C -0.165 4.165 9 C 0.049 3.951 10 H 0.113 0.887 11 N -0.379 5.379 12 C 0.320 3.680 13 O -0.393 6.393 14 C -0.303 4.303 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.042 3.958 25 H 0.094 0.906 26 O -0.359 6.359 27 C -0.105 4.105 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.229 0.771 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.224 0.776 48 H 0.096 0.904 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.519 25.847 0.531 28.303 hybrid contribution 1.521 0.671 -3.378 3.765 sum -9.999 26.518 -2.847 28.483 Atomic orbital electron populations 1.21826 0.95073 1.01824 1.01708 1.21103 0.95873 0.96368 0.98305 1.21890 1.01007 0.95972 1.01689 1.21670 0.94311 1.00924 0.98045 1.22186 0.95995 0.98653 0.90458 1.61911 1.09462 1.15160 1.39418 1.22207 1.00775 0.87076 0.97609 1.21999 0.94762 1.02036 0.97698 1.20879 0.92024 0.89041 0.93155 0.88678 1.45946 1.63593 1.07884 1.20467 1.20257 0.77947 0.81474 0.88274 1.90690 1.49177 1.69283 1.30167 1.23522 1.02794 1.04389 0.99608 1.85377 1.79461 0.92459 1.25932 1.22869 1.45783 0.95919 1.03741 0.91012 1.24989 0.95498 0.95912 0.97216 1.70017 1.44696 1.05049 1.30529 0.86173 0.79423 0.78215 0.81709 1.20273 1.20755 1.19745 1.22047 0.81369 0.96007 0.96360 0.90561 1.86660 1.19644 1.33031 1.96598 1.22799 0.88476 1.01109 0.98091 0.92638 0.92782 0.92648 0.91363 0.92600 0.92619 0.92916 0.91716 0.91012 0.90628 0.94819 0.90088 0.94269 0.89687 0.90126 0.77122 0.89335 0.89538 0.92207 0.77649 0.90430 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.15 0.34 -0.51 16 2 C -0.10 -0.59 2.92 -90.62 -0.26 -0.85 16 3 C -0.15 -0.81 8.95 37.16 0.33 -0.47 16 4 C -0.11 -0.75 4.61 -26.73 -0.12 -0.88 16 5 C 0.05 0.40 4.72 -3.82 -0.02 0.38 16 6 N -0.53 -4.47 4.66 -234.58 -1.09 -5.56 16 7 C 0.05 0.50 5.15 -3.76 -0.02 0.48 16 8 C -0.13 -1.41 5.77 -26.58 -0.15 -1.56 16 9 C 0.15 1.94 2.51 -67.81 -0.17 1.77 16 10 H 0.10 1.44 7.58 -51.93 -0.39 1.04 16 11 N -0.72 -10.42 4.17 -53.69 -0.22 -10.64 16 12 C 0.53 10.35 7.82 -10.99 -0.09 10.27 16 13 O -0.52 -12.00 15.53 5.56 0.09 -11.91 16 14 C -0.15 -3.20 6.16 36.01 0.22 -2.97 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 20 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.10 0.96 3.36 -26.65 -0.09 0.87 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 O -0.56 -5.56 13.14 -35.23 -0.46 -6.02 16 27 C 0.02 0.19 4.93 -3.83 -0.02 0.17 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.29 6.57 -51.93 -0.34 -0.05 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.49 6.41 -51.93 -0.33 0.16 16 38 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 39 H 0.08 0.74 6.21 -51.93 -0.32 0.41 16 40 H 0.04 0.43 7.69 -51.93 -0.40 0.03 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.39 4.92 7.01 -40.82 -0.29 4.63 16 44 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.38 1.98 9.08 45.56 0.41 2.40 16 48 H 0.08 0.50 8.02 -51.93 -0.42 0.08 16 49 H 0.04 0.37 6.64 -51.93 -0.34 0.02 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -34.74 396.80 -9.86 -44.60 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.80 Total: 2.95 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 0.15 Total: -6.48 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.58 Total: -41.93 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.38 Total: -17.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.74 -9.86 -44.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.230 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds