Wall clock time and date at job start Tue Mar 31 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46983 * 2 1 4 4 C 1.52995 * 109.47587 * 120.00153 * 2 1 3 5 5 C 1.53000 * 109.47411 * 174.99845 * 4 2 1 6 6 N 1.46902 * 109.47116 * 180.02562 * 5 4 2 7 7 C 1.46845 * 111.00081 * 65.78955 * 6 5 4 8 8 C 1.53173 * 109.55435 * 185.83905 * 7 6 5 9 9 C 1.53119 * 109.21042 * 300.86076 * 8 7 6 10 10 H 1.08998 * 109.52156 * 177.55857 * 9 8 7 11 11 N 1.46500 * 109.52279 * 297.68945 * 9 8 7 12 12 C 1.34769 * 120.00241 * 274.87498 * 11 9 8 13 13 O 1.21282 * 119.99850 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00466 * 179.97438 * 12 11 9 15 15 S 1.81000 * 109.47238 * 179.97438 * 14 12 11 16 16 C 1.76205 * 99.99610 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99527 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00398 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99780 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47287 * 90.00177 * 20 18 16 22 22 H 1.48500 * 109.47266 * 210.00229 * 20 18 16 23 23 H 1.48498 * 109.47178 * 329.99930 * 20 18 16 24 24 C 1.53118 * 109.21170 * 57.62845 * 9 8 7 25 25 H 1.08998 * 109.50810 * 62.24918 * 24 9 8 26 26 O 1.42893 * 109.50328 * 182.37602 * 24 9 8 27 27 C 1.46844 * 110.99945 * 190.00166 * 6 5 4 28 28 H 1.09004 * 109.47311 * 299.99703 * 1 2 3 29 29 H 1.09001 * 109.47313 * 59.99723 * 1 2 3 30 30 H 1.09002 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47311 * 240.00297 * 2 1 3 32 32 H 1.08996 * 109.47236 * 60.00508 * 3 2 1 33 33 H 1.08999 * 109.46998 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46948 * 300.00161 * 3 2 1 35 35 H 1.09003 * 109.47127 * 54.99488 * 4 2 1 36 36 H 1.09005 * 109.47320 * 295.00585 * 4 2 1 37 37 H 1.09003 * 109.46997 * 60.00207 * 5 4 2 38 38 H 1.08999 * 109.47384 * 299.99939 * 5 4 2 39 39 H 1.09002 * 109.46472 * 305.85546 * 7 6 5 40 40 H 1.09002 * 109.46085 * 65.83445 * 7 6 5 41 41 H 1.09004 * 109.58345 * 180.91065 * 8 7 6 42 42 H 1.09004 * 109.49061 * 60.75398 * 8 7 6 43 43 H 0.97003 * 119.99532 * 94.86907 * 11 9 8 44 44 H 1.09004 * 109.46923 * 59.99646 * 14 12 11 45 45 H 1.09004 * 109.46818 * 300.00196 * 14 12 11 46 46 H 0.97006 * 120.00587 * 179.97438 * 19 18 16 47 47 H 0.96705 * 114.00404 * 179.97438 * 26 24 9 48 48 H 1.09002 * 109.46481 * 54.14867 * 27 6 5 49 49 H 1.08999 * 109.45703 * 294.16861 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5649 -0.8310 1.1878 6 7 4.0545 -1.5241 2.3869 7 6 3.5991 -2.9200 2.4108 8 6 4.0029 -3.5683 3.7385 9 6 5.5255 -3.5046 3.8878 10 1 5.8150 -3.9256 4.8506 11 7 6.1556 -4.2700 2.8093 12 6 6.3309 -5.5998 2.9401 13 8 5.9674 -6.1629 3.9509 14 6 6.9786 -6.3874 1.8304 15 16 7.0714 -8.1320 2.3033 16 6 7.8459 -8.7974 0.8673 17 1 8.1075 -8.1480 0.0449 18 6 8.1209 -10.1558 0.7936 19 7 7.8026 -10.9471 1.7961 20 14 8.9427 -10.8612 -0.7285 21 1 10.4172 -10.8250 -0.5567 22 1 8.5014 -12.2656 -0.9235 23 1 8.5626 -10.0537 -1.9154 24 6 5.9786 -2.0440 3.8111 25 1 5.5403 -1.4831 4.6366 26 8 7.4037 -1.9816 3.8943 27 6 5.5175 -1.4411 2.4821 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6054 -1.7198 1.2951 36 1 1.7516 -0.1584 2.1370 37 1 3.9995 0.1675 1.1419 38 1 3.8532 -1.3940 0.3001 39 1 2.5145 -2.9500 2.3074 40 1 4.0578 -3.4658 1.5863 41 1 3.6793 -4.6091 3.7502 42 1 3.5336 -3.0314 4.5630 43 1 6.4466 -3.8196 2.0009 44 1 7.9840 -6.0054 1.6527 45 1 6.3862 -6.2880 0.9208 46 1 7.9944 -11.8966 1.7444 47 1 7.7614 -1.0841 3.8517 48 1 5.8262 -0.3970 2.4306 49 1 5.9670 -1.9939 1.6572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099687762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:14 Heat of formation + Delta-G solvation = -128.149781 kcal Electronic energy + Delta-G solvation = -26559.108620 eV Core-core repulsion = 22838.423808 eV Total energy + Delta-G solvation = -3720.684812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45918 -39.78182 -38.09996 -36.70119 -35.48704 -34.60107 -32.95039 -31.00511 -30.62719 -28.98751 -27.96838 -27.66880 -25.39757 -24.22623 -22.66193 -22.29522 -20.75931 -20.25313 -19.90487 -18.26238 -18.08778 -17.24164 -16.89862 -16.83573 -16.55255 -16.50744 -16.00142 -15.71213 -15.54485 -15.03907 -14.98386 -14.61492 -14.54447 -14.31610 -14.00812 -13.78337 -13.60348 -13.44994 -13.18515 -13.11659 -12.90668 -12.88869 -12.81501 -12.61924 -12.47047 -12.23436 -12.06344 -11.76668 -11.62561 -11.50115 -11.39744 -11.26172 -11.15849 -10.99183 -10.86114 -10.30357 -10.12721 -9.34083 -8.68602 -8.36021 -6.14462 1.24831 1.41298 1.45116 1.55932 1.60489 2.23600 2.27271 2.72439 2.97810 3.19114 3.30642 3.65230 3.78096 3.90048 3.95645 3.99085 4.08367 4.11135 4.17300 4.24592 4.25011 4.36213 4.43725 4.46682 4.54949 4.61204 4.67923 4.78311 4.81170 4.83237 4.85748 4.91679 5.00727 5.01529 5.07273 5.12531 5.17753 5.19111 5.37029 5.39809 5.48312 5.50474 5.55803 6.00861 6.06620 6.18152 6.45136 6.89312 7.04844 7.22312 8.73246 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.002443 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.157195 B =11460.908012 C =12488.182860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.107 4.107 5 C 0.057 3.943 6 N -0.531 5.531 7 C 0.057 3.943 8 C -0.119 4.119 9 C 0.147 3.853 10 H 0.066 0.934 11 N -0.700 5.700 12 C 0.536 3.464 13 O -0.564 6.564 14 C -0.129 4.129 15 S -0.147 6.147 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 1.000 3.000 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.258 1.258 24 C 0.113 3.887 25 H 0.092 0.908 26 O -0.576 6.576 27 C 0.028 3.972 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.088 0.912 40 H 0.025 0.975 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.407 0.593 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.272 0.728 47 H 0.399 0.601 48 H 0.105 0.895 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 30.065 -3.556 31.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.070 4.070 6 N -0.257 5.257 7 C -0.070 4.070 8 C -0.158 4.158 9 C 0.042 3.958 10 H 0.084 0.916 11 N -0.353 5.353 12 C 0.321 3.679 13 O -0.442 6.442 14 C -0.280 4.280 15 S 0.080 5.920 16 C -0.695 4.695 17 H 0.099 0.901 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.182 1.182 24 C 0.054 3.946 25 H 0.110 0.890 26 O -0.384 6.384 27 C -0.101 4.101 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.244 0.756 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.249 0.751 48 H 0.123 0.877 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.141 28.593 -1.344 30.716 hybrid contribution 1.369 -0.018 -2.749 3.071 sum -9.772 28.575 -4.093 30.476 Atomic orbital electron populations 1.21827 0.94993 1.01619 1.02008 1.21084 0.95954 0.96752 0.97714 1.21871 1.01211 0.95364 1.01903 1.21615 0.94032 1.00480 0.98334 1.22222 0.96232 0.99013 0.89581 1.61921 1.09779 1.13896 1.40091 1.22096 1.01179 0.87846 0.95918 1.21895 0.93724 1.00814 0.99406 1.21088 0.92903 0.90855 0.90930 0.91612 1.45717 1.62063 1.06159 1.21374 1.20015 0.77785 0.82880 0.87184 1.90678 1.51359 1.70496 1.31652 1.23353 1.04333 0.99543 1.00750 1.85550 1.79942 0.98732 1.27729 1.23192 1.45906 0.96647 1.03764 0.90079 1.26146 0.95929 0.96229 1.00898 1.70181 1.45975 1.05497 1.33048 0.84937 0.78299 0.77426 0.77205 1.19279 1.20142 1.18235 1.21905 0.81506 0.93322 0.97915 0.88995 1.86606 1.19749 1.35348 1.96710 1.22811 0.88050 1.02508 0.96721 0.92453 0.92382 0.93126 0.91798 0.92465 0.92244 0.92662 0.92617 0.91106 0.89193 0.95366 0.89379 0.95633 0.92531 0.88491 0.75575 0.87791 0.87588 0.91943 0.75073 0.87681 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.19 71.98 0.66 -0.84 16 2 C -0.10 -0.99 2.92 -10.80 -0.03 -1.03 16 3 C -0.15 -1.26 8.95 71.98 0.64 -0.62 16 4 C -0.11 -1.24 4.61 30.59 0.14 -1.10 16 5 C 0.06 0.68 4.72 86.30 0.41 1.08 16 6 N -0.53 -7.55 4.66 -896.06 -4.17 -11.72 16 7 C 0.06 1.05 5.15 86.37 0.44 1.50 16 8 C -0.12 -2.64 5.77 30.69 0.18 -2.46 16 9 C 0.15 3.64 2.51 45.07 0.11 3.75 16 10 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 11 N -0.70 -19.75 4.17 -442.16 -1.84 -21.60 16 12 C 0.54 21.06 7.82 87.66 0.69 21.74 16 13 O -0.56 -27.20 15.53 -3.04 -0.05 -27.24 16 14 C -0.13 -5.39 6.16 71.24 0.44 -4.95 16 15 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 16 C -0.55 -31.93 9.50 67.95 0.65 -31.28 16 17 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.74 5.49 84.86 0.47 1.20 16 19 N -0.91 -56.70 13.22 21.65 0.29 -56.42 16 20 Si 1.00 44.20 29.55 68.60 2.03 46.23 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 C 0.11 1.88 3.36 30.65 0.10 1.98 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 O -0.58 -10.17 13.14 -148.98 -1.96 -12.13 16 27 C 0.03 0.36 4.93 86.33 0.43 0.78 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.47 6.57 -2.39 -0.02 0.45 16 34 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 36 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.09 0.85 6.41 -2.39 -0.02 0.84 16 38 H 0.03 0.38 8.12 -2.39 -0.02 0.36 16 39 H 0.09 1.50 6.21 -2.39 -0.01 1.49 16 40 H 0.03 0.54 7.69 -2.39 -0.02 0.52 16 41 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.41 9.50 7.01 -92.71 -0.65 8.85 16 44 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 45 H 0.11 4.01 8.14 -2.39 -0.02 4.00 16 46 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 47 H 0.40 2.96 9.08 -74.05 -0.67 2.28 16 48 H 0.10 0.87 8.02 -2.39 -0.02 0.85 16 49 H 0.03 0.52 6.64 -2.39 -0.02 0.50 16 Total: -1.00 -77.69 396.80 -1.93 -79.62 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.38 Total: 23.05 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 5.32 Total: -10.25 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -5.73 Total: -89.74 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -2.01 Total: -39.38 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -77.69 -1.93 -79.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.534 kcal (2) G-P(sol) polarization free energy of solvation -77.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds