Wall clock time and date at job start Tue Mar 31 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47421 * 2 1 4 4 C 1.53003 * 109.47281 * 120.00230 * 2 1 3 5 5 C 1.52999 * 109.47347 * 174.99688 * 4 2 1 6 6 N 1.46898 * 109.47056 * 179.97438 * 5 4 2 7 7 C 1.46854 * 110.99958 * 45.78975 * 6 5 4 8 8 C 1.53039 * 109.52227 * 185.83752 * 7 6 5 9 9 C 1.53126 * 109.28009 * 300.82107 * 8 7 6 10 10 H 1.09001 * 109.52183 * 297.75176 * 9 8 7 11 11 N 1.46495 * 109.52288 * 177.61873 * 9 8 7 12 12 C 1.34777 * 119.99432 * 85.00378 * 11 9 8 13 13 O 1.21284 * 120.00242 * 0.02562 * 12 11 9 14 14 C 1.50699 * 119.99930 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47504 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00157 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00203 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99977 * 180.02562 * 16 15 14 19 19 N 1.31638 * 119.99889 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00183 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47291 * 59.99978 * 20 18 16 22 22 H 1.48507 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47003 * 299.99875 * 20 18 16 24 24 C 1.53099 * 109.15071 * 57.65227 * 9 8 7 25 25 H 1.09007 * 109.48839 * 182.39531 * 24 9 8 26 26 O 1.42902 * 109.50413 * 62.29195 * 24 9 8 27 27 C 1.46847 * 110.99897 * 169.99837 * 6 5 4 28 28 H 1.09004 * 109.46900 * 299.99895 * 1 2 3 29 29 H 1.08992 * 109.46798 * 59.99702 * 1 2 3 30 30 H 1.08999 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46900 * 240.00105 * 2 1 3 32 32 H 1.08994 * 109.46837 * 60.00125 * 3 2 1 33 33 H 1.09005 * 109.46833 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46925 * 300.00540 * 3 2 1 35 35 H 1.09005 * 109.46958 * 54.99620 * 4 2 1 36 36 H 1.08994 * 109.46994 * 295.00221 * 4 2 1 37 37 H 1.08992 * 109.47192 * 59.99890 * 5 4 2 38 38 H 1.09001 * 109.46718 * 299.99956 * 5 4 2 39 39 H 1.08993 * 109.46229 * 305.85774 * 7 6 5 40 40 H 1.09008 * 109.45803 * 65.83386 * 7 6 5 41 41 H 1.08994 * 109.50227 * 60.75933 * 8 7 6 42 42 H 1.08998 * 109.50241 * 180.83988 * 8 7 6 43 43 H 0.96996 * 120.00579 * 264.99966 * 11 9 8 44 44 H 1.09004 * 109.47333 * 299.99918 * 14 12 11 45 45 H 1.09001 * 109.47487 * 59.99833 * 14 12 11 46 46 H 0.96999 * 119.99394 * 180.02562 * 19 18 16 47 47 H 0.96701 * 113.99873 * 180.17758 * 26 24 9 48 48 H 1.09002 * 109.46481 * 294.17890 * 27 6 5 49 49 H 1.08994 * 109.46283 * 54.15743 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1879 6 7 4.0546 -1.5232 2.3876 7 6 3.2513 -2.7198 2.6697 8 6 3.6949 -3.3314 4.0005 9 6 5.1794 -3.6980 3.9187 10 1 5.3267 -4.4496 3.1432 11 7 5.6237 -4.2316 5.2086 12 6 5.4503 -5.5375 5.4933 13 8 4.9270 -6.2709 4.6814 14 6 5.9079 -6.0867 6.8199 15 16 5.5379 -7.8567 6.9003 16 6 6.1602 -8.2268 8.5066 17 1 6.6030 -7.4461 9.1073 18 6 6.0815 -9.5217 9.0000 19 7 5.5413 -10.4732 8.2681 20 14 6.7406 -9.9140 10.7032 21 1 6.0173 -9.1006 11.7134 22 1 6.5377 -11.3565 10.9925 23 1 8.1904 -9.5968 10.7581 24 6 5.9882 -2.4440 3.5762 25 1 7.0412 -2.7069 3.4747 26 8 5.8352 -1.4782 4.6184 27 6 5.4785 -1.8580 2.2577 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1302 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6054 -1.7199 1.2951 36 1 1.7517 -0.1584 2.1369 37 1 3.9995 0.1673 1.1420 38 1 3.8531 -1.3941 0.3002 39 1 2.1984 -2.4446 2.7294 40 1 3.3917 -3.4479 1.8707 41 1 3.5422 -2.6087 4.8020 42 1 3.1087 -4.2279 4.2023 43 1 6.0426 -3.6452 5.8578 44 1 6.9821 -5.9346 6.9252 45 1 5.3871 -5.5701 7.6262 46 1 5.4860 -11.3781 8.6131 47 1 6.3196 -0.6552 4.4661 48 1 5.6082 -2.5901 1.4606 49 1 6.0430 -0.9568 2.0184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099687763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:18 Heat of formation + Delta-G solvation = -100.309470 kcal Electronic energy + Delta-G solvation = -26218.615278 eV Core-core repulsion = 22499.137713 eV Total energy + Delta-G solvation = -3719.477565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25529 -38.73808 -37.39432 -35.68408 -34.45214 -32.40089 -31.79182 -30.46476 -29.39226 -27.87548 -27.52311 -25.47389 -24.49794 -23.46829 -21.94124 -20.29905 -20.16747 -20.01960 -17.82450 -17.21938 -16.77373 -16.23739 -15.87606 -15.62889 -15.07318 -15.02158 -14.87356 -14.77829 -14.36266 -14.06574 -14.01069 -13.73497 -13.26537 -13.09748 -12.95639 -12.86616 -12.58212 -12.45434 -12.25829 -12.09814 -11.82495 -11.74172 -11.46608 -11.25989 -11.06220 -11.01757 -11.01569 -10.98156 -10.83242 -10.73688 -10.55510 -10.09708 -9.79078 -9.32815 -9.03516 -8.78288 -8.53443 -8.20648 -6.46691 -6.18916 -3.89119 3.06392 3.14323 3.25588 3.29362 3.33231 3.49174 3.75352 4.11255 4.23415 4.34189 4.47245 4.49315 4.58373 4.67783 4.76088 4.89419 5.03841 5.07832 5.14778 5.16069 5.17359 5.23412 5.25923 5.28892 5.31542 5.38737 5.44454 5.48185 5.54127 5.54451 5.64263 5.67744 5.76395 5.80196 5.82577 5.94312 5.94946 6.01394 6.02824 6.19749 6.33469 6.72266 6.78815 6.81745 7.47377 7.62172 7.83509 8.37946 8.68256 9.26285 10.88456 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.001967 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.471672 B =14232.013523 C =14768.265394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.120 4.120 5 C 0.054 3.946 6 N -0.527 5.527 7 C 0.053 3.947 8 C -0.125 4.125 9 C 0.157 3.843 10 H 0.092 0.908 11 N -0.728 5.728 12 C 0.532 3.468 13 O -0.521 6.521 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.104 3.896 25 H 0.064 0.936 26 O -0.547 6.547 27 C 0.026 3.974 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.085 0.915 40 H 0.033 0.967 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.404 0.596 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.376 0.624 48 H 0.044 0.956 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 25.434 -16.086 30.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.157 4.157 5 C -0.073 4.073 6 N -0.252 5.252 7 C -0.075 4.075 8 C -0.164 4.164 9 C 0.051 3.949 10 H 0.110 0.890 11 N -0.382 5.382 12 C 0.318 3.682 13 O -0.396 6.396 14 C -0.303 4.303 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C 0.044 3.956 25 H 0.082 0.918 26 O -0.352 6.352 27 C -0.103 4.103 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.238 0.762 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.223 0.777 48 H 0.062 0.938 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.502 23.843 -16.797 29.511 hybrid contribution 1.714 0.760 1.319 2.292 sum -2.788 24.603 -15.479 29.200 Atomic orbital electron populations 1.21834 0.95078 1.01822 1.01762 1.21103 0.95868 0.96404 0.98171 1.21891 1.01047 0.95923 1.01701 1.21828 0.94555 1.01035 0.98304 1.22207 0.95636 0.98926 0.90531 1.61968 1.01740 1.25145 1.36323 1.22212 0.98365 0.90193 0.96762 1.21933 0.95506 1.01158 0.97761 1.20913 0.93848 0.92761 0.87356 0.88977 1.45953 1.63986 1.09753 1.18474 1.20333 0.77931 0.81219 0.88683 1.90688 1.42075 1.57681 1.49154 1.23528 1.04187 1.06265 0.96368 1.85358 1.79783 0.95537 1.22703 1.22838 1.45975 0.97579 1.01977 0.90980 1.24991 0.95011 0.95165 0.98425 1.70015 1.41676 1.01732 1.36931 0.86226 0.79319 0.77428 0.82529 1.19943 1.20829 1.19957 1.22064 0.97821 0.88925 0.86785 0.91771 1.86526 1.75319 1.28640 1.44715 1.22767 0.90101 1.00234 0.97169 0.92582 0.92774 0.92662 0.91443 0.92548 0.92557 0.92957 0.91442 0.90866 0.90575 0.95135 0.89701 0.94849 0.90045 0.90719 0.76169 0.89299 0.89204 0.92170 0.77735 0.93810 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.10 -0.58 2.92 -90.62 -0.26 -0.84 16 3 C -0.15 -0.81 8.95 37.16 0.33 -0.47 16 4 C -0.12 -0.83 3.93 -26.73 -0.11 -0.94 16 5 C 0.05 0.40 5.03 -3.83 -0.02 0.38 16 6 N -0.53 -4.66 4.69 -234.67 -1.10 -5.76 16 7 C 0.05 0.54 4.85 -3.83 -0.02 0.52 16 8 C -0.12 -1.56 5.52 -26.65 -0.15 -1.71 16 9 C 0.16 1.98 2.30 -67.82 -0.16 1.82 16 10 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 11 N -0.73 -10.50 5.05 -53.70 -0.27 -10.77 16 12 C 0.53 10.21 7.81 -10.99 -0.09 10.13 16 13 O -0.52 -11.92 15.53 5.55 0.09 -11.84 16 14 C -0.15 -3.18 6.16 36.01 0.22 -2.95 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 16 C -0.54 -15.46 9.50 30.94 0.29 -15.16 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 20 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.10 0.96 3.42 -26.66 -0.09 0.87 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 O -0.55 -4.92 12.06 -35.23 -0.42 -5.35 16 27 C 0.03 0.21 5.09 -3.84 -0.02 0.19 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 6.57 -51.93 -0.34 -0.05 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.51 6.21 -51.93 -0.32 0.18 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.51 6.56 -51.93 -0.34 0.17 16 38 H 0.03 0.23 8.08 -51.93 -0.42 -0.19 16 39 H 0.08 0.81 5.81 -51.93 -0.30 0.51 16 40 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 41 H 0.08 1.08 7.80 -51.93 -0.40 0.68 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.40 5.07 8.13 -40.82 -0.33 4.73 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 45 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.38 1.94 9.08 45.56 0.41 2.36 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 LS Contribution 398.06 15.07 6.00 6.00 Total: -1.00 -34.32 398.06 -9.93 -44.25 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.90 Total: 3.09 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 0.19 Total: -6.67 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.64 Total: -42.21 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.34 Total: -17.18 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.32 -9.93 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.062 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds