Wall clock time and date at job start Tue Mar 31 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47421 * 2 1 4 4 C 1.53003 * 109.47281 * 120.00230 * 2 1 3 5 5 C 1.52999 * 109.47347 * 174.99688 * 4 2 1 6 6 N 1.46898 * 109.47056 * 179.97438 * 5 4 2 7 7 C 1.46854 * 110.99958 * 45.78975 * 6 5 4 8 8 C 1.53039 * 109.52227 * 185.83752 * 7 6 5 9 9 C 1.53126 * 109.28009 * 300.82107 * 8 7 6 10 10 H 1.09001 * 109.52183 * 297.75176 * 9 8 7 11 11 N 1.46495 * 109.52288 * 177.61873 * 9 8 7 12 12 C 1.34777 * 119.99432 * 85.00378 * 11 9 8 13 13 O 1.21284 * 120.00242 * 0.02562 * 12 11 9 14 14 C 1.50699 * 119.99930 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47504 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00157 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00203 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99977 * 180.02562 * 16 15 14 19 19 N 1.31638 * 119.99889 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00183 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47291 * 59.99978 * 20 18 16 22 22 H 1.48507 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47003 * 299.99875 * 20 18 16 24 24 C 1.53099 * 109.15071 * 57.65227 * 9 8 7 25 25 H 1.09007 * 109.48839 * 182.39531 * 24 9 8 26 26 O 1.42902 * 109.50413 * 62.29195 * 24 9 8 27 27 C 1.46847 * 110.99897 * 169.99837 * 6 5 4 28 28 H 1.09004 * 109.46900 * 299.99895 * 1 2 3 29 29 H 1.08992 * 109.46798 * 59.99702 * 1 2 3 30 30 H 1.08999 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46900 * 240.00105 * 2 1 3 32 32 H 1.08994 * 109.46837 * 60.00125 * 3 2 1 33 33 H 1.09005 * 109.46833 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46925 * 300.00540 * 3 2 1 35 35 H 1.09005 * 109.46958 * 54.99620 * 4 2 1 36 36 H 1.08994 * 109.46994 * 295.00221 * 4 2 1 37 37 H 1.08992 * 109.47192 * 59.99890 * 5 4 2 38 38 H 1.09001 * 109.46718 * 299.99956 * 5 4 2 39 39 H 1.08993 * 109.46229 * 305.85774 * 7 6 5 40 40 H 1.09008 * 109.45803 * 65.83386 * 7 6 5 41 41 H 1.08994 * 109.50227 * 60.75933 * 8 7 6 42 42 H 1.08998 * 109.50241 * 180.83988 * 8 7 6 43 43 H 0.96996 * 120.00579 * 264.99966 * 11 9 8 44 44 H 1.09004 * 109.47333 * 299.99918 * 14 12 11 45 45 H 1.09001 * 109.47487 * 59.99833 * 14 12 11 46 46 H 0.96999 * 119.99394 * 180.02562 * 19 18 16 47 47 H 0.96701 * 113.99873 * 180.17758 * 26 24 9 48 48 H 1.09002 * 109.46481 * 294.17890 * 27 6 5 49 49 H 1.08994 * 109.46283 * 54.15743 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1879 6 7 4.0546 -1.5232 2.3876 7 6 3.2513 -2.7198 2.6697 8 6 3.6949 -3.3314 4.0005 9 6 5.1794 -3.6980 3.9187 10 1 5.3267 -4.4496 3.1432 11 7 5.6237 -4.2316 5.2086 12 6 5.4503 -5.5375 5.4933 13 8 4.9270 -6.2709 4.6814 14 6 5.9079 -6.0867 6.8199 15 16 5.5379 -7.8567 6.9003 16 6 6.1602 -8.2268 8.5066 17 1 6.6030 -7.4461 9.1073 18 6 6.0815 -9.5217 9.0000 19 7 5.5413 -10.4732 8.2681 20 14 6.7406 -9.9140 10.7032 21 1 6.0173 -9.1006 11.7134 22 1 6.5377 -11.3565 10.9925 23 1 8.1904 -9.5968 10.7581 24 6 5.9882 -2.4440 3.5762 25 1 7.0412 -2.7069 3.4747 26 8 5.8352 -1.4782 4.6184 27 6 5.4785 -1.8580 2.2577 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1302 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6054 -1.7199 1.2951 36 1 1.7517 -0.1584 2.1369 37 1 3.9995 0.1673 1.1420 38 1 3.8531 -1.3941 0.3002 39 1 2.1984 -2.4446 2.7294 40 1 3.3917 -3.4479 1.8707 41 1 3.5422 -2.6087 4.8020 42 1 3.1087 -4.2279 4.2023 43 1 6.0426 -3.6452 5.8578 44 1 6.9821 -5.9346 6.9252 45 1 5.3871 -5.5701 7.6262 46 1 5.4860 -11.3781 8.6131 47 1 6.3196 -0.6552 4.4661 48 1 5.6082 -2.5901 1.4606 49 1 6.0430 -0.9568 2.0184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099687763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:17 Heat of formation + Delta-G solvation = -126.476938 kcal Electronic energy + Delta-G solvation = -26219.749984 eV Core-core repulsion = 22499.137713 eV Total energy + Delta-G solvation = -3720.612272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28063 -39.95430 -38.08151 -36.31863 -35.63135 -34.58477 -32.91131 -31.19404 -30.71735 -28.79626 -27.98060 -27.65167 -25.33154 -24.31772 -22.65027 -21.61477 -21.06946 -20.67732 -19.79611 -18.05080 -17.81369 -17.68724 -16.87972 -16.62725 -16.57168 -16.27723 -15.90785 -15.68046 -15.64980 -15.19259 -14.80350 -14.70432 -14.53036 -14.30122 -13.97472 -13.83668 -13.57168 -13.46093 -13.17163 -13.01651 -12.89931 -12.86890 -12.64124 -12.58024 -12.36346 -12.27909 -12.10409 -11.78260 -11.64326 -11.58130 -11.47027 -11.26458 -11.13001 -10.96270 -10.74074 -10.28994 -10.06522 -9.23912 -8.67076 -8.34631 -6.12944 1.26235 1.43974 1.46197 1.56320 1.59738 2.24180 2.28605 2.81974 2.99227 3.29514 3.37590 3.65126 3.77054 3.88868 3.93298 3.99099 4.03787 4.09859 4.12515 4.28770 4.35393 4.38007 4.48792 4.53196 4.54183 4.59950 4.67966 4.71135 4.73578 4.78693 4.83980 4.92354 4.96715 5.01474 5.06095 5.16361 5.17311 5.26253 5.34217 5.41418 5.48221 5.49579 5.53850 6.06490 6.13098 6.19558 6.52183 6.99391 7.06332 7.24242 8.74357 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.001967 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.471672 B =14232.013523 C =14768.265394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.116 4.116 5 C 0.057 3.943 6 N -0.531 5.531 7 C 0.060 3.940 8 C -0.117 4.117 9 C 0.150 3.850 10 H 0.074 0.926 11 N -0.704 5.704 12 C 0.534 3.466 13 O -0.565 6.565 14 C -0.129 4.129 15 S -0.148 6.148 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.261 1.261 24 C 0.116 3.884 25 H 0.080 0.920 26 O -0.560 6.560 27 C 0.027 3.973 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.417 0.583 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.396 0.604 48 H 0.042 0.958 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 28.119 -15.650 32.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.153 4.153 5 C -0.070 4.070 6 N -0.255 5.255 7 C -0.069 4.069 8 C -0.156 4.156 9 C 0.045 3.955 10 H 0.092 0.908 11 N -0.357 5.357 12 C 0.320 3.680 13 O -0.443 6.443 14 C -0.281 4.281 15 S 0.079 5.921 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.186 1.186 24 C 0.056 3.944 25 H 0.097 0.903 26 O -0.368 6.368 27 C -0.102 4.102 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.254 0.746 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.246 0.754 48 H 0.060 0.940 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.103 26.607 -16.369 31.393 hybrid contribution 1.260 0.058 1.116 1.684 sum -1.843 26.665 -15.253 30.775 Atomic orbital electron populations 1.21838 0.95090 1.01617 1.01999 1.21081 0.95870 0.96773 0.97586 1.21870 1.01315 0.95318 1.01831 1.21772 0.94517 1.00510 0.98524 1.22240 0.95687 0.99263 0.89797 1.61983 1.02131 1.24087 1.37328 1.22083 0.98965 0.90722 0.95107 1.21803 0.95093 0.99732 0.99005 1.21106 0.94668 0.94147 0.85583 0.90760 1.45742 1.62431 1.08064 1.19446 1.20086 0.77711 0.82494 0.87694 1.90678 1.44313 1.59145 1.50207 1.23370 1.05646 1.01018 0.98030 1.85531 1.80668 1.02270 1.23651 1.23180 1.46085 0.98335 1.02014 0.89967 1.26140 0.94994 0.94834 1.03185 1.70183 1.43036 1.02252 1.39268 0.84996 0.79056 0.77384 0.76504 1.18729 1.20307 1.18597 1.21892 0.97764 0.87455 0.87335 0.90260 1.86475 1.76013 1.29652 1.44620 1.22836 0.89722 1.01399 0.96229 0.92740 0.92145 0.93116 0.91387 0.92796 0.92079 0.92470 0.92389 0.91571 0.89259 0.95020 0.89260 0.95529 0.90579 0.93772 0.74629 0.87244 0.87569 0.91977 0.75421 0.94001 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.19 71.98 0.66 -0.93 16 2 C -0.09 -1.00 2.92 -10.79 -0.03 -1.03 16 3 C -0.15 -1.32 8.95 71.98 0.64 -0.67 16 4 C -0.12 -1.48 3.93 30.59 0.12 -1.36 16 5 C 0.06 0.72 5.03 86.30 0.43 1.15 16 6 N -0.53 -8.40 4.69 -896.37 -4.20 -12.60 16 7 C 0.06 1.20 4.85 86.32 0.42 1.62 16 8 C -0.12 -2.97 5.52 30.65 0.17 -2.80 16 9 C 0.15 3.70 2.30 45.07 0.10 3.80 16 10 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 11 N -0.70 -19.69 5.05 -442.18 -2.23 -21.92 16 12 C 0.53 20.64 7.81 87.66 0.68 21.32 16 13 O -0.57 -26.81 15.53 -3.04 -0.05 -26.86 16 14 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 15 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 16 C -0.55 -31.83 9.50 67.95 0.65 -31.19 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 20 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 C 0.12 1.85 3.42 30.64 0.10 1.96 16 25 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 26 O -0.56 -8.38 12.06 -148.98 -1.80 -10.18 16 27 C 0.03 0.36 5.09 86.32 0.44 0.80 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.49 6.57 -2.38 -0.02 0.48 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 0.85 6.21 -2.38 -0.01 0.83 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.93 6.56 -2.39 -0.02 0.91 16 38 H 0.03 0.41 8.08 -2.39 -0.02 0.39 16 39 H 0.09 1.71 5.81 -2.39 -0.01 1.69 16 40 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.08 2.00 7.80 -2.39 -0.02 1.98 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.42 9.60 8.13 -92.71 -0.75 8.84 16 44 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 45 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 46 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 47 H 0.40 2.60 9.08 -74.06 -0.67 1.92 16 48 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.11 0.89 8.12 -2.39 -0.02 0.87 16 Total: -1.00 -76.54 398.06 -2.32 -78.86 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.49 Total: 23.46 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 5.30 Total: -11.00 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -6.15 Total: -90.80 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.84 Total: -37.04 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -76.54 -2.32 -78.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.617 kcal (2) G-P(sol) polarization free energy of solvation -76.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds