Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47412 * 2 1 4 4 C 1.53005 * 109.46871 * 120.00423 * 2 1 3 5 5 C 1.53000 * 109.46724 * 174.99656 * 4 2 1 6 6 N 1.46899 * 109.46910 * 179.97438 * 5 4 2 7 7 C 1.46851 * 111.00164 * 66.04496 * 6 5 4 8 8 C 1.53037 * 109.52226 * 185.83687 * 7 6 5 9 9 C 1.53116 * 109.28053 * 300.82156 * 8 7 6 10 10 H 1.08994 * 109.52637 * 297.68610 * 9 8 7 11 11 N 1.46504 * 109.52041 * 177.55845 * 9 8 7 12 12 C 1.34775 * 119.99561 * 85.00411 * 11 9 8 13 13 O 1.21282 * 120.00577 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99768 * 180.02562 * 12 11 9 15 15 S 1.81000 * 109.47038 * 179.97438 * 14 12 11 16 16 C 1.76209 * 99.99875 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99972 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99599 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99397 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00627 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00578 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00328 * 20 18 16 23 23 H 1.48498 * 109.47210 * 150.00039 * 20 18 16 24 24 C 1.53119 * 109.15912 * 57.65840 * 9 8 7 25 25 H 1.08997 * 109.50458 * 62.28561 * 24 9 8 26 26 O 1.42903 * 109.50000 * 182.40299 * 24 9 8 27 27 C 1.46849 * 111.00095 * 190.25816 * 6 5 4 28 28 H 1.09003 * 109.46652 * 300.00158 * 1 2 3 29 29 H 1.08996 * 109.47143 * 59.99569 * 1 2 3 30 30 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46652 * 239.99842 * 2 1 3 32 32 H 1.09003 * 109.47341 * 60.00264 * 3 2 1 33 33 H 1.08994 * 109.47166 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47319 * 300.00323 * 3 2 1 35 35 H 1.08998 * 109.47030 * 54.99603 * 4 2 1 36 36 H 1.08998 * 109.46667 * 294.99438 * 4 2 1 37 37 H 1.08999 * 109.47244 * 59.99658 * 5 4 2 38 38 H 1.09004 * 109.47129 * 299.99734 * 5 4 2 39 39 H 1.09003 * 109.45564 * 65.82173 * 7 6 5 40 40 H 1.09002 * 109.45398 * 305.85419 * 7 6 5 41 41 H 1.09005 * 109.49766 * 180.88082 * 8 7 6 42 42 H 1.09003 * 109.53455 * 60.78692 * 8 7 6 43 43 H 0.96993 * 120.00065 * 265.00153 * 11 9 8 44 44 H 1.09000 * 109.47235 * 59.99532 * 14 12 11 45 45 H 1.09005 * 109.46867 * 299.99572 * 14 12 11 46 46 H 0.97005 * 119.99723 * 179.97438 * 19 18 16 47 47 H 0.96703 * 113.99495 * 179.97438 * 26 24 9 48 48 H 1.09000 * 109.45833 * 294.17712 * 27 6 5 49 49 H 1.08995 * 109.46087 * 54.14995 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8312 1.1879 6 7 4.0545 -1.5233 2.3876 7 6 3.6042 -2.9208 2.4097 8 6 4.0076 -3.5672 3.7368 9 6 5.5296 -3.4994 3.8902 10 1 6.0021 -4.0676 3.0890 11 7 5.9168 -4.0644 5.1852 12 6 6.0931 -5.3943 5.3146 13 8 5.9309 -6.1234 4.3591 14 6 6.4909 -5.9755 6.6469 15 16 6.6472 -7.7726 6.4986 16 6 7.1071 -8.1771 8.1509 17 1 7.2095 -7.3959 8.8895 18 6 7.3388 -9.4996 8.5027 19 7 7.6819 -9.8018 9.7371 20 14 7.1625 -10.8508 7.2250 21 1 5.7657 -11.3547 7.2269 22 1 7.4910 -10.3081 5.8822 23 1 8.0907 -11.9635 7.5498 24 6 5.9775 -2.0371 3.8153 25 1 5.5356 -1.4785 4.6403 26 8 7.4024 -1.9697 3.9016 27 6 5.5171 -1.4350 2.4859 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6769 1.9563 0.8900 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6053 -1.7199 1.2951 36 1 1.7517 -0.1584 2.1369 37 1 3.9995 0.1673 1.1419 38 1 3.8531 -1.3942 0.3001 39 1 4.0664 -3.4643 1.5856 40 1 2.5198 -2.9545 2.3040 41 1 3.6869 -4.6090 3.7465 42 1 3.5346 -3.0332 4.5610 43 1 6.0462 -3.4813 5.9495 44 1 5.7290 -5.7374 7.3892 45 1 7.4459 -5.5518 6.9576 46 1 7.8436 -10.7261 9.9831 47 1 7.7567 -1.0709 3.8602 48 1 5.9703 -1.9855 1.6615 49 1 5.8220 -0.3898 2.4357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099687764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = -104.443823 kcal Electronic energy + Delta-G solvation = -26120.482254 eV Core-core repulsion = 22400.825409 eV Total energy + Delta-G solvation = -3719.656844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28646 -38.79685 -37.46761 -36.07600 -34.62121 -32.40923 -31.96933 -30.32065 -29.53834 -27.96952 -27.57394 -25.59014 -24.44312 -23.54533 -22.01731 -20.45244 -20.32771 -20.18819 -17.86880 -17.55961 -16.81632 -16.39238 -16.07095 -15.53058 -15.26634 -15.19539 -14.93188 -14.77919 -14.39203 -14.13417 -13.91936 -13.58121 -13.43504 -13.20736 -13.11170 -13.02949 -12.76668 -12.67531 -12.35437 -12.11468 -12.06833 -11.74590 -11.61072 -11.42351 -11.23579 -11.11557 -11.05964 -10.98298 -10.77409 -10.73797 -10.50508 -10.34109 -9.82497 -9.43702 -8.98314 -8.90392 -8.73826 -8.46088 -6.87756 -6.26016 -3.97162 2.80197 3.04099 3.30483 3.33771 3.36476 3.53187 3.68336 3.90413 4.28890 4.35982 4.43283 4.49009 4.53862 4.60109 4.74645 4.80026 4.84226 4.87795 4.97092 5.02868 5.13001 5.13783 5.19453 5.21063 5.25257 5.34524 5.35878 5.41333 5.44013 5.49537 5.53447 5.58817 5.62103 5.64880 5.77575 5.82825 5.87179 5.93021 5.98494 6.06560 6.09815 6.60602 6.62325 6.66783 7.34651 7.69507 7.97189 8.44874 8.56641 9.20297 10.83238 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.025660 B = 0.002045 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.935029 B =13688.205240 C =14332.966365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.112 4.112 5 C 0.055 3.945 6 N -0.535 5.535 7 C 0.053 3.947 8 C -0.126 4.126 9 C 0.157 3.843 10 H 0.090 0.910 11 N -0.724 5.724 12 C 0.534 3.466 13 O -0.522 6.522 14 C -0.123 4.123 15 S -0.142 6.142 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.235 1.235 23 H -0.275 1.275 24 C 0.102 3.898 25 H 0.070 0.930 26 O -0.556 6.556 27 C 0.028 3.972 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.400 0.600 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.270 0.730 47 H 0.377 0.623 48 H 0.044 0.956 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 25.502 -18.257 33.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.073 4.073 6 N -0.261 5.261 7 C -0.075 4.075 8 C -0.165 4.165 9 C 0.051 3.949 10 H 0.108 0.892 11 N -0.377 5.377 12 C 0.320 3.680 13 O -0.397 6.397 14 C -0.274 4.274 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.518 5.518 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.159 1.159 23 H -0.200 1.200 24 C 0.042 3.958 25 H 0.088 0.912 26 O -0.360 6.360 27 C -0.101 4.101 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.234 0.766 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.224 0.776 48 H 0.063 0.937 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.059 23.710 -19.250 32.481 hybrid contribution 0.658 0.670 0.458 1.044 sum -10.401 24.379 -18.793 32.491 Atomic orbital electron populations 1.21830 0.95049 1.01809 1.01766 1.21104 0.95889 0.96392 0.98240 1.21892 1.01009 0.95955 1.01746 1.21679 0.94271 1.00939 0.98126 1.22186 0.96019 0.98716 0.90355 1.61925 1.09776 1.14955 1.39474 1.22178 1.01068 0.87171 0.97095 1.21990 0.94818 1.02031 0.97673 1.20875 0.94437 0.91864 0.87733 0.89208 1.45846 1.72126 1.07593 1.12134 1.20254 0.75903 0.81573 0.90302 1.90684 1.49626 1.59033 1.40365 1.23274 1.04959 1.02353 0.96793 1.84765 1.90998 0.98145 1.17699 1.22332 1.53786 0.97192 0.93494 0.89396 1.24715 0.93280 0.98022 0.95324 1.69947 1.44971 1.19590 1.17251 0.86729 0.79186 0.82154 0.83748 1.19236 1.15928 1.19977 1.22028 0.81360 0.95949 0.96461 0.91214 1.86659 1.19717 1.33055 1.96586 1.22754 0.88299 1.01219 0.97784 0.92585 0.92775 0.92668 0.91405 0.92546 0.92610 0.92904 0.91717 0.90932 0.90549 0.94795 0.94336 0.89742 0.89761 0.90548 0.76625 0.88550 0.88460 0.91989 0.77558 0.93726 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.19 37.16 0.34 -0.41 16 2 C -0.10 -0.52 2.92 -90.62 -0.26 -0.78 16 3 C -0.15 -0.72 8.95 37.15 0.33 -0.39 16 4 C -0.11 -0.68 4.62 -26.73 -0.12 -0.81 16 5 C 0.05 0.36 4.71 -3.82 -0.02 0.34 16 6 N -0.54 -4.26 4.65 -234.67 -1.09 -5.35 16 7 C 0.05 0.48 5.29 -3.83 -0.02 0.46 16 8 C -0.13 -1.36 5.67 -26.65 -0.15 -1.52 16 9 C 0.16 1.91 2.20 -67.81 -0.15 1.76 16 10 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 11 N -0.72 -9.94 5.00 -53.69 -0.27 -10.21 16 12 C 0.53 9.85 7.81 -10.98 -0.09 9.77 16 13 O -0.52 -11.53 15.53 5.56 0.09 -11.44 16 14 C -0.12 -2.46 6.16 36.01 0.22 -2.24 16 15 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 16 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 17 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.86 13.97 55.49 0.78 -26.08 16 20 Si 0.86 22.09 27.74 -169.99 -4.72 17.38 16 21 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.10 0.93 3.13 -26.65 -0.08 0.85 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 O -0.56 -5.40 13.23 -35.23 -0.47 -5.87 16 27 C 0.03 0.22 5.08 -3.83 -0.02 0.20 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.26 6.57 -51.93 -0.34 -0.08 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.42 6.44 -51.93 -0.33 0.09 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.45 6.41 -51.93 -0.33 0.12 16 38 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.69 6.22 -51.93 -0.32 0.36 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.40 4.50 8.60 -40.82 -0.35 4.15 16 44 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.10 1.84 8.14 -51.91 -0.42 1.42 16 46 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.38 1.88 9.08 45.56 0.41 2.30 16 48 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.48 8.01 -51.93 -0.42 0.06 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -34.76 398.27 -9.47 -44.24 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.00 Total: 1.99 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 0.20 Total: -4.97 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.59 Total: -41.65 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.38 Total: -17.31 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.72 Total: 17.38 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.76 -9.47 -44.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.206 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds