Wall clock time and date at job start Tue Mar 31 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47412 * 2 1 4 4 C 1.53005 * 109.46871 * 120.00423 * 2 1 3 5 5 C 1.53000 * 109.46724 * 174.99656 * 4 2 1 6 6 N 1.46899 * 109.46910 * 179.97438 * 5 4 2 7 7 C 1.46851 * 111.00164 * 66.04496 * 6 5 4 8 8 C 1.53037 * 109.52226 * 185.83687 * 7 6 5 9 9 C 1.53116 * 109.28053 * 300.82156 * 8 7 6 10 10 H 1.08994 * 109.52637 * 297.68610 * 9 8 7 11 11 N 1.46504 * 109.52041 * 177.55845 * 9 8 7 12 12 C 1.34775 * 119.99561 * 85.00411 * 11 9 8 13 13 O 1.21282 * 120.00577 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99768 * 180.02562 * 12 11 9 15 15 S 1.81000 * 109.47038 * 179.97438 * 14 12 11 16 16 C 1.76209 * 99.99875 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99972 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99599 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99397 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00627 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00578 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00328 * 20 18 16 23 23 H 1.48498 * 109.47210 * 150.00039 * 20 18 16 24 24 C 1.53119 * 109.15912 * 57.65840 * 9 8 7 25 25 H 1.08997 * 109.50458 * 62.28561 * 24 9 8 26 26 O 1.42903 * 109.50000 * 182.40299 * 24 9 8 27 27 C 1.46849 * 111.00095 * 190.25816 * 6 5 4 28 28 H 1.09003 * 109.46652 * 300.00158 * 1 2 3 29 29 H 1.08996 * 109.47143 * 59.99569 * 1 2 3 30 30 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46652 * 239.99842 * 2 1 3 32 32 H 1.09003 * 109.47341 * 60.00264 * 3 2 1 33 33 H 1.08994 * 109.47166 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47319 * 300.00323 * 3 2 1 35 35 H 1.08998 * 109.47030 * 54.99603 * 4 2 1 36 36 H 1.08998 * 109.46667 * 294.99438 * 4 2 1 37 37 H 1.08999 * 109.47244 * 59.99658 * 5 4 2 38 38 H 1.09004 * 109.47129 * 299.99734 * 5 4 2 39 39 H 1.09003 * 109.45564 * 65.82173 * 7 6 5 40 40 H 1.09002 * 109.45398 * 305.85419 * 7 6 5 41 41 H 1.09005 * 109.49766 * 180.88082 * 8 7 6 42 42 H 1.09003 * 109.53455 * 60.78692 * 8 7 6 43 43 H 0.96993 * 120.00065 * 265.00153 * 11 9 8 44 44 H 1.09000 * 109.47235 * 59.99532 * 14 12 11 45 45 H 1.09005 * 109.46867 * 299.99572 * 14 12 11 46 46 H 0.97005 * 119.99723 * 179.97438 * 19 18 16 47 47 H 0.96703 * 113.99495 * 179.97438 * 26 24 9 48 48 H 1.09000 * 109.45833 * 294.17712 * 27 6 5 49 49 H 1.08995 * 109.46087 * 54.14995 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8312 1.1879 6 7 4.0545 -1.5233 2.3876 7 6 3.6042 -2.9208 2.4097 8 6 4.0076 -3.5672 3.7368 9 6 5.5296 -3.4994 3.8902 10 1 6.0021 -4.0676 3.0890 11 7 5.9168 -4.0644 5.1852 12 6 6.0931 -5.3943 5.3146 13 8 5.9309 -6.1234 4.3591 14 6 6.4909 -5.9755 6.6469 15 16 6.6472 -7.7726 6.4986 16 6 7.1071 -8.1771 8.1509 17 1 7.2095 -7.3959 8.8895 18 6 7.3388 -9.4996 8.5027 19 7 7.6819 -9.8018 9.7371 20 14 7.1625 -10.8508 7.2250 21 1 5.7657 -11.3547 7.2269 22 1 7.4910 -10.3081 5.8822 23 1 8.0907 -11.9635 7.5498 24 6 5.9775 -2.0371 3.8153 25 1 5.5356 -1.4785 4.6403 26 8 7.4024 -1.9697 3.9016 27 6 5.5171 -1.4350 2.4859 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6769 1.9563 0.8900 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6053 -1.7199 1.2951 36 1 1.7517 -0.1584 2.1369 37 1 3.9995 0.1673 1.1419 38 1 3.8531 -1.3942 0.3001 39 1 4.0664 -3.4643 1.5856 40 1 2.5198 -2.9545 2.3040 41 1 3.6869 -4.6090 3.7465 42 1 3.5346 -3.0332 4.5610 43 1 6.0462 -3.4813 5.9495 44 1 5.7290 -5.7374 7.3892 45 1 7.4459 -5.5518 6.9576 46 1 7.8436 -10.7261 9.9831 47 1 7.7567 -1.0709 3.8602 48 1 5.9703 -1.9855 1.6615 49 1 5.8220 -0.3898 2.4357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099687764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:20 Heat of formation + Delta-G solvation = -131.334618 kcal Electronic energy + Delta-G solvation = -26121.648326 eV Core-core repulsion = 22400.825409 eV Total energy + Delta-G solvation = -3720.822917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28733 -39.93193 -38.11681 -36.68976 -35.72643 -34.67577 -33.01031 -31.00028 -30.81263 -28.83283 -27.96890 -27.84479 -25.20935 -24.32137 -22.67847 -21.74360 -21.14788 -20.76104 -19.85591 -18.32412 -17.90497 -17.83072 -17.10813 -16.69588 -16.44978 -16.36848 -15.91792 -15.72717 -15.57817 -15.11574 -14.99658 -14.76203 -14.58717 -14.30614 -14.03404 -13.94390 -13.75146 -13.49706 -13.35158 -13.12794 -13.01891 -12.88681 -12.74357 -12.67308 -12.38421 -12.31222 -12.07395 -11.88685 -11.70059 -11.50964 -11.41564 -11.27694 -11.17510 -11.11871 -10.84924 -10.54586 -10.14412 -9.39871 -9.00270 -8.51956 -6.22834 0.97782 1.30639 1.46043 1.54559 1.56000 2.18845 2.25422 2.68696 2.70977 2.86100 3.17691 3.61686 3.81985 3.86273 3.95915 3.96315 4.02012 4.09470 4.15046 4.22271 4.23487 4.36104 4.38823 4.45865 4.54973 4.58696 4.66542 4.69436 4.77691 4.80939 4.85247 4.91357 4.97841 5.00415 5.07484 5.15237 5.17564 5.19374 5.36979 5.43706 5.49616 5.55824 5.70437 5.97664 6.03859 6.10922 6.45512 6.87280 6.93106 7.18603 8.60447 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.025660 B = 0.002045 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.935029 B =13688.205240 C =14332.966365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.107 4.107 5 C 0.056 3.944 6 N -0.534 5.534 7 C 0.058 3.942 8 C -0.119 4.119 9 C 0.152 3.848 10 H 0.057 0.943 11 N -0.702 5.702 12 C 0.537 3.463 13 O -0.564 6.564 14 C -0.110 4.110 15 S -0.175 6.175 16 C -0.529 4.529 17 H 0.062 0.938 18 C 0.046 3.954 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.261 1.261 22 H -0.239 1.239 23 H -0.258 1.258 24 C 0.112 3.888 25 H 0.088 0.912 26 O -0.577 6.577 27 C 0.032 3.968 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.415 0.585 44 H 0.115 0.885 45 H 0.110 0.890 46 H 0.277 0.723 47 H 0.399 0.601 48 H 0.031 0.969 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 27.643 -19.250 35.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.071 4.071 6 N -0.260 5.260 7 C -0.070 4.070 8 C -0.158 4.158 9 C 0.047 3.953 10 H 0.076 0.924 11 N -0.354 5.354 12 C 0.322 3.678 13 O -0.442 6.442 14 C -0.261 4.261 15 S 0.051 5.949 16 C -0.677 4.677 17 H 0.080 0.920 18 C -0.160 4.160 19 N -0.554 5.554 20 Si 0.737 3.263 21 H -0.186 1.186 22 H -0.163 1.163 23 H -0.182 1.182 24 C 0.052 3.948 25 H 0.106 0.894 26 O -0.385 6.385 27 C -0.097 4.097 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.252 0.748 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.086 0.914 47 H 0.250 0.750 48 H 0.049 0.951 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.589 25.923 -20.229 34.864 hybrid contribution 0.822 0.183 0.773 1.143 sum -10.767 26.106 -19.456 34.293 Atomic orbital electron populations 1.21830 0.94965 1.01685 1.01982 1.21086 0.95959 0.96690 0.97732 1.21877 1.01204 0.95460 1.01897 1.21623 0.93888 1.00616 0.98366 1.22228 0.96328 0.99018 0.89510 1.61956 1.09888 1.13912 1.40210 1.22091 1.01616 0.87792 0.95496 1.21880 0.93732 1.00927 0.99232 1.21053 0.95225 0.93533 0.85522 0.92445 1.45657 1.70144 1.06027 1.13548 1.19961 0.75915 0.82897 0.88980 1.90675 1.51912 1.60358 1.41300 1.23260 1.06461 0.97826 0.98550 1.84697 1.90990 1.03773 1.15397 1.22464 1.53632 0.96905 0.94704 0.91958 1.25560 0.92982 1.00241 0.97171 1.70019 1.45889 1.20593 1.18888 0.85864 0.79706 0.79715 0.81064 1.18580 1.16271 1.18232 1.21907 0.81484 0.93458 0.97905 0.89384 1.86606 1.19866 1.35343 1.96673 1.22761 0.88040 1.02460 0.96410 0.92571 0.92368 0.92983 0.91611 0.92557 0.92266 0.92622 0.92366 0.91188 0.89247 0.95233 0.95578 0.88702 0.92285 0.89317 0.74786 0.86711 0.87140 0.91351 0.75035 0.95094 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 71.98 0.66 -0.65 16 2 C -0.10 -0.86 2.92 -10.79 -0.03 -0.89 16 3 C -0.15 -1.13 8.95 71.98 0.64 -0.49 16 4 C -0.11 -1.11 4.62 30.60 0.14 -0.97 16 5 C 0.06 0.62 4.71 86.30 0.41 1.03 16 6 N -0.53 -7.34 4.65 -896.35 -4.17 -11.51 16 7 C 0.06 1.00 5.29 86.32 0.46 1.45 16 8 C -0.12 -2.48 5.67 30.65 0.17 -2.30 16 9 C 0.15 3.56 2.20 45.07 0.10 3.66 16 10 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 11 N -0.70 -18.33 5.00 -442.16 -2.21 -20.54 16 12 C 0.54 19.55 7.81 87.66 0.68 20.24 16 13 O -0.56 -25.19 15.53 -3.04 -0.05 -25.24 16 14 C -0.11 -4.32 6.16 71.24 0.44 -3.89 16 15 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16 16 C -0.53 -31.39 10.04 67.95 0.68 -30.71 16 17 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 18 C 0.05 2.73 5.50 84.86 0.47 3.20 16 19 N -0.92 -56.33 13.97 21.65 0.30 -56.03 16 20 Si 0.91 45.71 27.74 68.60 1.90 47.62 16 21 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.24 -11.99 6.74 99.48 0.67 -11.32 16 23 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.11 1.78 3.13 30.65 0.10 1.88 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 O -0.58 -9.82 13.23 -148.98 -1.97 -11.80 16 27 C 0.03 0.42 5.08 86.32 0.44 0.86 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.41 6.57 -2.39 -0.02 0.40 16 34 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.06 0.68 6.44 -2.39 -0.02 0.67 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.79 6.41 -2.39 -0.02 0.77 16 38 H 0.03 0.37 8.12 -2.38 -0.02 0.35 16 39 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 1.43 6.22 -2.39 -0.01 1.41 16 41 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.42 8.35 8.60 -92.71 -0.80 7.55 16 44 H 0.11 4.09 8.14 -2.40 -0.02 4.08 16 45 H 0.11 4.06 8.14 -2.39 -0.02 4.05 16 46 H 0.28 15.73 8.31 -92.70 -0.77 14.96 16 47 H 0.40 2.77 9.08 -74.06 -0.67 2.09 16 48 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.11 0.88 8.01 -2.39 -0.02 0.86 16 Total: -1.00 -75.82 398.27 -2.45 -78.27 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -0.57 Total: 16.94 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.36 Total: -7.58 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -6.08 Total: -88.08 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -2.02 Total: -37.03 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.62 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal Total: -75.82 -2.45 -78.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.062 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds