Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00273 * 2 1 4 4 H 1.48499 * 109.47405 * 272.93253 * 3 2 1 5 5 H 1.48504 * 109.47097 * 32.93132 * 3 2 1 6 6 H 1.48499 * 109.47244 * 152.92394 * 3 2 1 7 7 C 1.38809 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 339.37586 * 7 2 1 9 9 N 1.36940 * 119.99883 * 159.37125 * 7 2 1 10 10 C 1.46927 * 120.63237 * 332.60598 * 9 7 2 11 11 C 1.53190 * 108.77614 * 233.62998 * 10 9 7 12 12 C 1.53039 * 109.31203 * 305.36487 * 11 10 9 13 13 H 1.08999 * 109.46338 * 301.34421 * 12 11 10 14 14 N 1.46503 * 109.44540 * 181.38052 * 12 11 10 15 15 C 1.34778 * 120.00200 * 84.96564 * 14 12 11 16 16 O 1.21283 * 119.99613 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00321 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.54111 * 59.82117 * 17 15 14 19 19 F 1.39899 * 109.47200 * 180.02562 * 18 17 15 20 20 C 1.53186 * 109.54576 * 299.56165 * 17 15 14 21 21 C 1.53099 * 109.15857 * 297.11023 * 20 17 15 22 22 O 1.42898 * 109.41473 * 302.39073 * 21 20 17 23 23 C 1.42908 * 114.09781 * 61.16033 * 22 21 20 24 24 C 1.53087 * 109.41223 * 298.83886 * 23 22 21 25 25 C 1.53033 * 109.53747 * 61.36770 * 12 11 10 26 26 H 1.09004 * 109.50201 * 58.58396 * 25 12 11 27 27 O 1.42905 * 109.49715 * 178.64950 * 25 12 11 28 28 C 1.46931 * 120.63109 * 152.62930 * 9 7 2 29 29 H 0.97009 * 119.99881 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58577 * 353.42098 * 10 9 7 31 31 H 1.09004 * 109.58032 * 113.84045 * 10 9 7 32 32 H 1.08996 * 109.49217 * 185.41241 * 11 10 9 33 33 H 1.08995 * 109.49467 * 65.32105 * 11 10 9 34 34 H 0.97007 * 119.99852 * 264.96408 * 14 12 11 35 35 H 1.08994 * 109.47399 * 300.00431 * 18 17 15 36 36 H 1.09002 * 109.46669 * 60.00523 * 18 17 15 37 37 H 1.09001 * 109.51992 * 57.01450 * 20 17 15 38 38 H 1.08998 * 109.52298 * 177.20735 * 20 17 15 39 39 H 1.08998 * 109.47625 * 182.40789 * 21 20 17 40 40 H 1.09005 * 109.48691 * 62.38122 * 21 20 17 41 41 H 1.08998 * 109.47492 * 178.86121 * 23 22 21 42 42 H 1.08997 * 109.48819 * 58.83193 * 23 22 21 43 43 H 1.09002 * 109.52856 * 297.70357 * 24 23 22 44 44 H 1.09007 * 109.52015 * 177.51238 * 24 23 22 45 45 H 0.96701 * 113.99942 * 179.97438 * 27 25 12 46 46 H 1.09006 * 109.58439 * 6.58828 * 28 9 7 47 47 H 1.08990 * 109.70433 * 246.22937 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4358 2.0822 -1.3982 5 1 1.4801 2.6340 0.7611 6 1 3.5773 1.4230 0.6373 7 6 2.0102 -1.2021 -0.0005 8 1 1.5221 -2.1077 0.3285 9 7 3.3137 -1.2400 -0.4184 10 6 3.8177 -0.2584 -1.3885 11 6 4.4622 -1.0078 -2.5588 12 6 5.5286 -1.9648 -2.0212 13 1 6.2781 -1.3994 -1.4675 14 7 6.1697 -2.6591 -3.1407 15 6 7.1993 -2.0817 -3.7912 16 8 7.5952 -0.9874 -3.4494 17 6 7.8592 -2.7960 -4.9423 18 6 6.8268 -3.0601 -6.0402 19 9 7.4407 -3.7238 -7.1078 20 6 8.4418 -4.1259 -4.4539 21 6 9.5280 -3.8461 -3.4118 22 8 10.5343 -3.0106 -3.9873 23 6 10.0567 -1.7348 -4.4190 24 6 8.9919 -1.9298 -5.5015 25 6 4.8746 -2.9903 -1.0925 26 1 4.1077 -3.5393 -1.6391 27 8 5.8659 -3.9026 -0.6159 28 6 4.2348 -2.2634 0.0945 29 1 -0.4850 0.8401 0.0004 30 1 2.9913 0.3505 -1.7551 31 1 4.5604 0.3800 -0.9099 32 1 4.9248 -0.2922 -3.2384 33 1 3.6993 -1.5753 -3.0916 34 1 5.8533 -3.5345 -3.4137 35 1 6.0230 -3.6792 -5.6419 36 1 6.4167 -2.1122 -6.3888 37 1 7.6513 -4.7265 -4.0038 38 1 8.8753 -4.6649 -5.2962 39 1 9.9758 -4.7870 -3.0921 40 1 9.0859 -3.3431 -2.5518 41 1 10.8856 -1.1548 -4.8248 42 1 9.6216 -1.2039 -3.5724 43 1 9.4365 -2.4244 -6.3650 44 1 8.5947 -0.9597 -5.8007 45 1 5.5213 -4.5818 -0.0200 46 1 3.6835 -2.9776 0.7063 47 1 5.0117 -1.7907 0.6953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100008795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = -160.672606 kcal Electronic energy + Delta-G solvation = -30848.263511 eV Core-core repulsion = 26559.955228 eV Total energy + Delta-G solvation = -4288.308283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.01258 -41.01092 -39.03919 -37.83844 -35.74296 -34.84881 -34.51812 -32.15985 -31.30561 -30.31544 -29.30370 -28.24603 -25.41827 -23.92434 -23.70351 -22.86664 -22.56243 -21.49578 -20.20681 -19.27537 -17.45459 -17.11513 -16.89228 -16.69640 -16.54277 -16.23309 -15.83169 -15.77343 -15.32649 -14.99255 -14.67775 -14.55711 -14.47750 -13.96610 -13.87017 -13.76989 -13.31088 -12.93157 -12.64135 -12.60258 -12.48132 -12.36759 -12.09051 -11.87900 -11.67605 -11.65222 -11.51784 -11.26574 -11.11484 -10.79043 -10.61335 -10.28881 -10.23152 -10.11266 -9.97834 -9.84840 -9.61047 -9.46827 -8.95566 -8.73883 -7.15435 -6.07095 -3.45621 2.43546 2.99755 3.25298 3.42812 3.45405 3.72569 3.98208 4.12519 4.13591 4.25541 4.42729 4.48236 4.69221 4.79296 4.81822 4.86431 5.03305 5.03699 5.14928 5.23980 5.29107 5.30374 5.31684 5.43724 5.46139 5.53255 5.59299 5.64359 5.68990 5.73449 5.81145 5.87315 5.99081 6.12774 6.18140 6.29369 6.42979 6.47619 6.54525 6.69502 7.04761 7.41385 7.67246 7.83036 8.11272 8.18917 8.77954 9.57787 9.92377 11.08205 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018871 B = 0.003437 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.424323 B = 8144.006301 C = 8340.900716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.268 4.268 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.126 3.874 11 C -0.141 4.141 12 C 0.161 3.839 13 H 0.090 0.910 14 N -0.711 5.711 15 C 0.524 3.476 16 O -0.529 6.529 17 C -0.113 4.113 18 C 0.077 3.923 19 F -0.207 7.207 20 C -0.143 4.143 21 C 0.061 3.939 22 O -0.384 6.384 23 C 0.051 3.949 24 C -0.129 4.129 25 C 0.080 3.920 26 H 0.061 0.939 27 O -0.570 6.570 28 C 0.124 3.876 29 H 0.264 0.736 30 H 0.079 0.921 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.377 0.623 46 H 0.070 0.930 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.748 -9.320 -10.240 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.171 4.171 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.105 0.895 9 N -0.326 5.326 10 C 0.000 4.000 11 C -0.181 4.181 12 C 0.058 3.942 13 H 0.108 0.892 14 N -0.361 5.361 15 C 0.309 3.691 16 O -0.406 6.406 17 C -0.116 4.116 18 C 0.021 3.979 19 F -0.188 7.188 20 C -0.180 4.180 21 C -0.016 4.016 22 O -0.303 6.303 23 C -0.026 4.026 24 C -0.167 4.167 25 C 0.019 3.981 26 H 0.079 0.921 27 O -0.374 6.374 28 C -0.003 4.003 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.231 0.769 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.224 0.776 46 H 0.089 0.911 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 16.445 -8.137 -10.361 21.071 hybrid contribution -0.581 0.261 0.155 0.656 sum 15.864 -7.876 -10.206 20.442 Atomic orbital electron populations 1.69826 1.05746 1.26790 1.52265 1.25257 0.95213 0.97641 0.99029 0.86996 0.80133 0.84556 0.77223 1.21442 1.22901 1.19429 1.18882 0.84620 0.94917 1.41204 0.89536 1.44317 1.08550 1.33023 1.46728 1.21386 0.97513 0.92072 0.89033 1.22430 0.97328 0.98534 0.99816 1.20993 0.94951 0.92679 0.85614 0.89194 1.46116 1.33867 1.21997 1.34118 1.20070 0.79764 0.85892 0.83375 1.90674 1.62961 1.20279 1.66669 1.21553 0.97208 0.98064 0.94805 1.21930 0.93727 0.98062 0.84141 1.92774 1.85122 1.82878 1.58047 1.22258 0.99789 0.94858 1.01140 1.22538 0.89371 0.95309 0.94367 1.87899 1.34618 1.27601 1.80144 1.22824 0.96998 0.85177 0.97575 1.22026 0.95120 1.00140 0.99436 1.22723 0.89220 0.90088 0.96088 0.92077 1.86462 1.37683 1.45163 1.68137 1.21545 0.93149 0.92430 0.93218 0.92572 0.90282 0.95123 0.91458 0.91242 0.76873 0.90095 0.89832 0.90086 0.89302 0.88474 0.92778 0.88969 0.90399 0.89997 0.89906 0.77607 0.91145 0.94828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.97 55.49 0.78 -25.99 16 2 C 0.03 0.79 5.23 -17.43 -0.09 0.70 16 3 Si 0.88 21.81 24.34 -169.99 -4.14 17.67 16 4 H -0.29 -6.86 6.62 56.52 0.37 -6.49 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.61 6.63 56.52 0.37 -6.23 16 7 C -0.27 -7.10 10.04 -15.06 -0.15 -7.25 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 N -0.60 -13.36 2.77 -172.32 -0.48 -13.84 16 10 C 0.13 2.64 4.20 -3.71 -0.02 2.63 16 11 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 12 C 0.16 2.46 2.12 -67.89 -0.14 2.32 16 13 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 14 N -0.71 -8.65 4.69 -53.77 -0.25 -8.90 16 15 C 0.52 6.70 5.11 -10.99 -0.06 6.64 16 16 O -0.53 -8.58 13.50 5.55 0.07 -8.51 16 17 C -0.11 -1.14 0.49 -155.48 -0.08 -1.21 16 18 C 0.08 0.67 6.28 37.16 0.23 0.90 16 19 F -0.21 -2.09 16.22 2.25 0.04 -2.05 16 20 C -0.14 -1.30 4.77 -26.58 -0.13 -1.42 16 21 C 0.06 0.65 6.62 37.21 0.25 0.89 16 22 O -0.38 -4.77 10.77 -35.23 -0.38 -5.15 16 23 C 0.05 0.59 6.55 37.20 0.24 0.83 16 24 C -0.13 -1.36 4.47 -26.60 -0.12 -1.48 16 25 C 0.08 1.16 3.14 -26.62 -0.08 1.08 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 O -0.57 -7.07 13.16 -35.23 -0.46 -7.54 16 28 C 0.12 2.22 6.14 -3.71 -0.02 2.20 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.08 1.82 4.49 -51.93 -0.23 1.59 16 31 H 0.03 0.66 7.08 -51.93 -0.37 0.29 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.40 3.89 7.43 -40.82 -0.30 3.59 16 35 H 0.08 0.56 7.56 -51.93 -0.39 0.17 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.62 7.52 -51.93 -0.39 0.23 16 38 H 0.09 0.79 7.73 -51.93 -0.40 0.39 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.67 7.38 -51.93 -0.38 0.28 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.08 5.80 -51.93 -0.30 0.77 16 43 H 0.08 0.81 7.73 -51.93 -0.40 0.41 16 44 H 0.08 0.87 8.03 -51.92 -0.42 0.46 16 45 H 0.38 3.23 9.08 45.56 0.41 3.64 16 46 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -32.05 359.29 -6.28 -38.33 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.55 Total: 6.29 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.31 Total: 4.27 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.05 Total: -48.73 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.77 Total: -21.20 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.05 -6.28 -38.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100008795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.344 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds