Wall clock time and date at job start Tue Mar 31 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00273 * 2 1 4 4 H 1.48499 * 109.47405 * 272.93253 * 3 2 1 5 5 H 1.48504 * 109.47097 * 32.93132 * 3 2 1 6 6 H 1.48499 * 109.47244 * 152.92394 * 3 2 1 7 7 C 1.38809 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 339.37586 * 7 2 1 9 9 N 1.36940 * 119.99883 * 159.37125 * 7 2 1 10 10 C 1.46927 * 120.63237 * 332.60598 * 9 7 2 11 11 C 1.53190 * 108.77614 * 233.62998 * 10 9 7 12 12 C 1.53039 * 109.31203 * 305.36487 * 11 10 9 13 13 H 1.08999 * 109.46338 * 301.34421 * 12 11 10 14 14 N 1.46503 * 109.44540 * 181.38052 * 12 11 10 15 15 C 1.34778 * 120.00200 * 84.96564 * 14 12 11 16 16 O 1.21283 * 119.99613 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00321 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.54111 * 59.82117 * 17 15 14 19 19 F 1.39899 * 109.47200 * 180.02562 * 18 17 15 20 20 C 1.53186 * 109.54576 * 299.56165 * 17 15 14 21 21 C 1.53099 * 109.15857 * 297.11023 * 20 17 15 22 22 O 1.42898 * 109.41473 * 302.39073 * 21 20 17 23 23 C 1.42908 * 114.09781 * 61.16033 * 22 21 20 24 24 C 1.53087 * 109.41223 * 298.83886 * 23 22 21 25 25 C 1.53033 * 109.53747 * 61.36770 * 12 11 10 26 26 H 1.09004 * 109.50201 * 58.58396 * 25 12 11 27 27 O 1.42905 * 109.49715 * 178.64950 * 25 12 11 28 28 C 1.46931 * 120.63109 * 152.62930 * 9 7 2 29 29 H 0.97009 * 119.99881 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58577 * 353.42098 * 10 9 7 31 31 H 1.09004 * 109.58032 * 113.84045 * 10 9 7 32 32 H 1.08996 * 109.49217 * 185.41241 * 11 10 9 33 33 H 1.08995 * 109.49467 * 65.32105 * 11 10 9 34 34 H 0.97007 * 119.99852 * 264.96408 * 14 12 11 35 35 H 1.08994 * 109.47399 * 300.00431 * 18 17 15 36 36 H 1.09002 * 109.46669 * 60.00523 * 18 17 15 37 37 H 1.09001 * 109.51992 * 57.01450 * 20 17 15 38 38 H 1.08998 * 109.52298 * 177.20735 * 20 17 15 39 39 H 1.08998 * 109.47625 * 182.40789 * 21 20 17 40 40 H 1.09005 * 109.48691 * 62.38122 * 21 20 17 41 41 H 1.08998 * 109.47492 * 178.86121 * 23 22 21 42 42 H 1.08997 * 109.48819 * 58.83193 * 23 22 21 43 43 H 1.09002 * 109.52856 * 297.70357 * 24 23 22 44 44 H 1.09007 * 109.52015 * 177.51238 * 24 23 22 45 45 H 0.96701 * 113.99942 * 179.97438 * 27 25 12 46 46 H 1.09006 * 109.58439 * 6.58828 * 28 9 7 47 47 H 1.08990 * 109.70433 * 246.22937 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4358 2.0822 -1.3982 5 1 1.4801 2.6340 0.7611 6 1 3.5773 1.4230 0.6373 7 6 2.0102 -1.2021 -0.0005 8 1 1.5221 -2.1077 0.3285 9 7 3.3137 -1.2400 -0.4184 10 6 3.8177 -0.2584 -1.3885 11 6 4.4622 -1.0078 -2.5588 12 6 5.5286 -1.9648 -2.0212 13 1 6.2781 -1.3994 -1.4675 14 7 6.1697 -2.6591 -3.1407 15 6 7.1993 -2.0817 -3.7912 16 8 7.5952 -0.9874 -3.4494 17 6 7.8592 -2.7960 -4.9423 18 6 6.8268 -3.0601 -6.0402 19 9 7.4407 -3.7238 -7.1078 20 6 8.4418 -4.1259 -4.4539 21 6 9.5280 -3.8461 -3.4118 22 8 10.5343 -3.0106 -3.9873 23 6 10.0567 -1.7348 -4.4190 24 6 8.9919 -1.9298 -5.5015 25 6 4.8746 -2.9903 -1.0925 26 1 4.1077 -3.5393 -1.6391 27 8 5.8659 -3.9026 -0.6159 28 6 4.2348 -2.2634 0.0945 29 1 -0.4850 0.8401 0.0004 30 1 2.9913 0.3505 -1.7551 31 1 4.5604 0.3800 -0.9099 32 1 4.9248 -0.2922 -3.2384 33 1 3.6993 -1.5753 -3.0916 34 1 5.8533 -3.5345 -3.4137 35 1 6.0230 -3.6792 -5.6419 36 1 6.4167 -2.1122 -6.3888 37 1 7.6513 -4.7265 -4.0038 38 1 8.8753 -4.6649 -5.2962 39 1 9.9758 -4.7870 -3.0921 40 1 9.0859 -3.3431 -2.5518 41 1 10.8856 -1.1548 -4.8248 42 1 9.6216 -1.2039 -3.5724 43 1 9.4365 -2.4244 -6.3650 44 1 8.5947 -0.9597 -5.8007 45 1 5.5213 -4.5818 -0.0200 46 1 3.6835 -2.9776 0.7063 47 1 5.0117 -1.7907 0.6953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100008795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:46 Heat of formation + Delta-G solvation = -186.487757 kcal Electronic energy + Delta-G solvation = -30849.382940 eV Core-core repulsion = 26559.955228 eV Total energy + Delta-G solvation = -4289.427712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.72384 -41.99087 -40.24102 -38.94441 -37.12079 -35.94562 -35.55182 -33.99571 -32.28859 -31.72024 -30.70586 -29.07050 -27.03664 -24.75052 -24.72439 -24.29751 -23.82718 -22.73106 -21.53864 -20.36328 -18.98089 -18.12284 -18.04722 -17.79018 -17.56858 -17.27116 -16.90312 -16.60322 -16.46233 -16.20980 -16.14663 -15.66851 -15.63175 -15.16307 -15.04224 -14.79268 -14.56853 -14.49820 -14.03888 -13.92388 -13.68540 -13.39401 -13.31968 -13.18319 -12.98483 -12.72463 -12.63842 -12.38983 -12.30388 -12.17245 -11.90333 -11.66812 -11.57476 -11.48559 -11.41719 -11.16720 -10.92454 -10.69233 -10.42408 -10.10473 -9.02784 -8.20782 -5.53972 1.26635 1.39346 1.44602 1.46492 1.96861 2.37016 2.89392 2.90713 3.10000 3.21048 3.33700 3.35832 3.38660 3.73023 3.80563 3.93066 3.98650 4.06252 4.08937 4.16834 4.22566 4.27601 4.30613 4.35601 4.46590 4.53662 4.57967 4.67359 4.70499 4.73447 4.77610 4.79642 4.84771 4.88863 4.97207 5.00815 5.02296 5.12794 5.24533 5.39613 5.80492 6.08759 6.18249 6.44803 6.78419 6.91069 7.13819 7.54952 7.94519 8.98333 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018871 B = 0.003437 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.424323 B = 8144.006301 C = 8340.900716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.024 4.024 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.310 1.310 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.613 5.613 10 C 0.122 3.878 11 C -0.128 4.128 12 C 0.169 3.831 13 H 0.066 0.934 14 N -0.699 5.699 15 C 0.526 3.474 16 O -0.565 6.565 17 C -0.107 4.107 18 C 0.077 3.923 19 F -0.213 7.213 20 C -0.137 4.137 21 C 0.056 3.944 22 O -0.398 6.398 23 C 0.050 3.950 24 C -0.128 4.128 25 C 0.101 3.899 26 H 0.073 0.927 27 O -0.567 6.567 28 C 0.118 3.882 29 H 0.262 0.738 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.413 0.587 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.033 0.967 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.397 0.603 46 H 0.077 0.923 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.215 -11.137 -11.628 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.220 4.220 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.238 1.238 6 H -0.193 1.193 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.338 5.338 10 C -0.004 4.004 11 C -0.168 4.168 12 C 0.064 3.936 13 H 0.084 0.916 14 N -0.349 5.349 15 C 0.312 3.688 16 O -0.444 6.444 17 C -0.111 4.111 18 C 0.022 3.978 19 F -0.194 7.194 20 C -0.175 4.175 21 C -0.020 4.020 22 O -0.317 6.317 23 C -0.026 4.026 24 C -0.166 4.166 25 C 0.040 3.960 26 H 0.091 0.909 27 O -0.374 6.374 28 C -0.008 4.008 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.250 0.750 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.051 0.949 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.247 0.753 46 H 0.095 0.905 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 17.957 -10.011 -11.762 23.685 hybrid contribution -0.947 0.734 0.649 1.362 sum 17.009 -9.277 -11.113 22.336 Atomic orbital electron populations 1.69929 1.07139 1.27214 1.55285 1.25771 0.95669 1.00352 1.00211 0.86129 0.78714 0.81301 0.77528 1.20309 1.23848 1.19267 1.18886 0.86210 0.93840 1.38892 0.91721 1.44399 1.07868 1.34138 1.47443 1.21350 0.96715 0.92185 0.90142 1.22234 0.97766 0.98731 0.98088 1.20650 0.93825 0.92677 0.86473 0.91620 1.45870 1.33518 1.22417 1.33129 1.20516 0.79306 0.85423 0.83568 1.90675 1.63911 1.22104 1.67731 1.21521 0.97259 0.98141 0.94140 1.22016 0.93504 0.98860 0.83426 1.92766 1.85316 1.82994 1.58314 1.22267 0.99808 0.94370 1.01015 1.22674 0.89736 0.95483 0.94130 1.87879 1.35661 1.27860 1.80295 1.22802 0.97757 0.85003 0.97071 1.22010 0.95001 1.00310 0.99237 1.22272 0.89468 0.89950 0.94359 0.90909 1.86445 1.37003 1.45274 1.68707 1.21751 0.92446 0.91683 0.94883 0.92839 0.92475 0.95680 0.91052 0.90477 0.75005 0.87727 0.89448 0.88037 0.88411 0.86587 0.94878 0.87813 0.92930 0.89030 0.90248 0.75253 0.90500 0.95151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 13.97 21.65 0.30 -57.20 16 2 C -0.02 -1.37 5.23 84.86 0.44 -0.93 16 3 Si 0.93 45.75 24.34 68.60 1.67 47.42 16 4 H -0.28 -12.90 6.62 99.48 0.66 -12.24 16 5 H -0.31 -15.47 7.11 99.48 0.71 -14.77 16 6 H -0.27 -12.86 6.63 99.48 0.66 -12.20 16 7 C -0.25 -13.23 10.04 84.03 0.84 -12.39 16 8 H 0.07 3.67 8.06 -2.91 -0.02 3.65 16 9 N -0.61 -26.78 2.77 -699.09 -1.94 -28.72 16 10 C 0.12 5.01 4.20 86.36 0.36 5.37 16 11 C -0.13 -4.13 5.65 30.67 0.17 -3.95 16 12 C 0.17 4.80 2.12 45.02 0.10 4.90 16 13 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 14 N -0.70 -15.03 4.69 -442.42 -2.08 -17.11 16 15 C 0.53 12.40 5.11 87.66 0.45 12.85 16 16 O -0.57 -17.95 13.50 -3.04 -0.04 -18.00 16 17 C -0.11 -1.89 0.49 -52.81 -0.03 -1.91 16 18 C 0.08 1.08 6.28 71.98 0.45 1.53 16 19 F -0.21 -3.59 16.22 44.97 0.73 -2.86 16 20 C -0.14 -2.05 4.77 30.69 0.15 -1.90 16 21 C 0.06 1.08 6.62 72.02 0.48 1.56 16 22 O -0.40 -9.35 10.77 -148.98 -1.60 -10.95 16 23 C 0.05 1.13 6.55 72.01 0.47 1.60 16 24 C -0.13 -2.47 4.47 30.68 0.14 -2.33 16 25 C 0.10 2.65 3.14 30.67 0.10 2.75 16 26 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 27 O -0.57 -12.12 13.16 -148.98 -1.96 -14.08 16 28 C 0.12 4.05 6.14 86.36 0.53 4.58 16 29 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 30 H 0.06 2.60 4.49 -2.39 -0.01 2.59 16 31 H 0.03 1.06 7.08 -2.39 -0.02 1.05 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.41 6.40 7.43 -92.70 -0.69 5.71 16 35 H 0.10 0.99 7.56 -2.39 -0.02 0.97 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.11 7.52 -2.39 -0.02 1.10 16 38 H 0.10 1.37 7.73 -2.39 -0.02 1.35 16 39 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.03 0.77 7.38 -2.38 -0.02 0.75 16 41 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.47 5.80 -2.39 -0.01 1.45 16 43 H 0.09 1.61 7.73 -2.39 -0.02 1.59 16 44 H 0.08 1.58 8.03 -2.38 -0.02 1.56 16 45 H 0.40 5.27 9.08 -74.06 -0.67 4.59 16 46 H 0.08 2.51 7.93 -2.38 -0.02 2.49 16 47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.43 359.29 -0.72 -71.15 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.45 Total: 18.65 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 4.65 Total: 11.72 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -3.71 Total: -103.03 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -3.61 Total: -43.03 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.73 Total: -2.86 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.42 kcal Total: -70.43 -0.72 -71.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100008795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.342 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds