Wall clock time and date at job start Tue Mar 31 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35534 * 125.67423 * 2 1 4 4 C 1.35455 * 108.87054 * 179.97438 * 3 2 1 5 5 C 1.39842 * 107.86209 * 359.73967 * 4 3 2 6 6 C 1.37646 * 125.68102 * 179.97438 * 2 1 3 7 7 C 1.46683 * 126.23033 * 0.02562 * 6 2 1 8 8 O 1.21697 * 119.99864 * 5.10148 * 7 6 2 9 9 N 1.34770 * 120.00067 * 185.09782 * 7 6 2 10 10 C 1.47581 * 134.49454 * 174.58142 * 9 7 6 11 11 C 1.53948 * 86.11983 * 155.35948 * 10 9 7 12 12 N 1.46497 * 113.74586 * 137.95142 * 11 10 9 13 13 C 1.35309 * 125.86741 * 277.24803 * 12 11 10 14 14 C 1.35353 * 106.17425 * 180.11286 * 13 12 11 15 15 C 1.50701 * 126.75300 * 179.85039 * 14 13 12 16 16 N 1.46491 * 109.47046 * 94.71603 * 15 14 13 17 17 C 1.36938 * 119.99877 * 179.72443 * 16 15 14 18 18 H 1.07998 * 120.00286 * 0.27864 * 17 16 15 19 19 C 1.38823 * 119.99840 * 180.27414 * 17 16 15 20 20 N 1.31614 * 119.99868 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 119.99822 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47310 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47295 * 120.00213 * 21 19 17 24 24 H 1.48508 * 109.47364 * 240.00431 * 21 19 17 25 25 N 1.33773 * 106.49391 * 359.59636 * 14 13 12 26 26 N 1.28629 * 108.89069 * 0.25469 * 25 14 13 27 27 C 1.47823 * 134.45735 * 354.44286 * 9 7 6 28 28 H 1.08996 * 109.47080 * 274.86546 * 1 2 3 29 29 H 1.09002 * 109.47266 * 34.86283 * 1 2 3 30 30 H 1.09000 * 109.46832 * 154.86166 * 1 2 3 31 31 H 1.08000 * 125.56699 * 0.02562 * 3 2 1 32 32 H 1.07996 * 126.07029 * 180.02562 * 4 3 2 33 33 H 1.08002 * 126.45366 * 180.29763 * 5 4 3 34 34 H 1.08991 * 113.77355 * 41.05227 * 10 9 7 35 35 H 1.09005 * 113.76306 * 269.65490 * 10 9 7 36 36 H 1.09001 * 113.73259 * 269.15351 * 11 10 9 37 37 H 1.07994 * 126.91429 * 359.97370 * 13 12 11 38 38 H 1.09008 * 109.46864 * 334.71567 * 15 14 13 39 39 H 1.09000 * 109.46974 * 214.72072 * 15 14 13 40 40 H 0.97006 * 120.00452 * 359.97438 * 16 15 14 41 41 H 0.96997 * 119.99731 * 179.97438 * 20 19 17 42 42 H 1.08994 * 113.76576 * 90.37620 * 27 9 7 43 43 H 1.09007 * 113.83218 * 318.92158 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6888 0.0070 6 6 2.2679 -1.1181 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6257 -2.7649 -0.0935 9 7 2.7082 -3.5139 0.1048 10 6 2.6094 -4.9804 0.2371 11 6 4.0183 -5.0264 -0.3815 12 7 4.9150 -5.9882 0.2643 13 6 5.6284 -5.7724 1.3936 14 6 6.3155 -6.9144 1.6296 15 6 7.2607 -7.1782 2.7733 16 7 6.5380 -7.8425 3.8607 17 6 7.1972 -8.1881 5.0101 18 1 8.2489 -7.9669 5.1168 19 6 6.5137 -8.8227 6.0383 20 7 5.2321 -9.0926 5.9081 21 14 7.4128 -9.2935 7.6064 22 1 8.8360 -8.8823 7.5035 23 1 6.7825 -8.6081 8.7632 24 1 7.3346 -10.7639 7.7996 25 7 5.9862 -7.7649 0.6509 26 7 5.1548 -7.1860 -0.1417 27 6 4.1846 -3.5840 0.1299 28 1 -0.3633 0.0872 1.0239 29 1 -0.3634 0.8432 -0.5874 30 1 -0.3633 -0.9303 -0.4366 31 1 1.9081 2.1236 0.0004 32 1 4.4132 1.3612 0.0011 33 1 4.4584 -1.3143 0.0136 34 1 1.8389 -5.4273 -0.3911 35 1 2.5716 -5.3267 1.2700 36 1 4.0178 -5.1093 -1.4683 37 1 5.6475 -4.8697 1.9862 38 1 7.6691 -6.2335 3.1324 39 1 8.0736 -7.8193 2.4324 40 1 5.5932 -8.0408 3.7652 41 1 4.7546 -9.5364 6.6264 42 1 4.6104 -3.5191 1.1311 43 1 4.6694 -2.9178 -0.5839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105159621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:58 Heat of formation + Delta-G solvation = 187.863238 kcal Electronic energy + Delta-G solvation = -26980.626273 eV Core-core repulsion = 23066.953270 eV Total energy + Delta-G solvation = -3913.673003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.13885 -41.81897 -40.36124 -38.11111 -35.01550 -33.73306 -33.15132 -31.85995 -30.67166 -29.95244 -28.68875 -27.18508 -26.68876 -25.86598 -24.38544 -22.84172 -22.22226 -21.03867 -20.90988 -20.53090 -19.50656 -18.06850 -17.68469 -17.07504 -16.82703 -16.29133 -15.97132 -15.58553 -15.10397 -14.80294 -14.54636 -14.44585 -14.00207 -13.72405 -13.61585 -13.56837 -13.30791 -13.17417 -12.86280 -12.82250 -12.65887 -12.62206 -12.39510 -12.01200 -11.69218 -11.29479 -10.89792 -10.82656 -10.58570 -10.33374 -10.06450 -9.92871 -9.74024 -9.39094 -9.16008 -8.91501 -8.87242 -8.64462 -6.91853 -5.73952 -3.03628 1.02606 1.67363 1.76583 2.27993 2.39652 2.67207 2.86251 2.99278 3.45220 3.45918 3.51437 3.53856 3.72075 4.16302 4.28015 4.42153 4.58068 4.61661 4.64179 4.69881 4.80764 4.82206 4.95293 5.01478 5.06881 5.08837 5.21140 5.25383 5.32163 5.45506 5.61678 5.64946 5.76127 5.77214 6.16654 6.34049 6.36431 6.55477 6.62992 6.67041 6.76247 6.76926 7.01038 7.62682 7.72018 8.43205 8.77976 9.55182 10.10600 10.46207 11.48836 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.002343 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.418086 B =11949.821898 C =12601.764092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.410 5.410 3 C 0.018 3.982 4 C -0.207 4.207 5 C -0.141 4.141 6 C -0.053 4.053 7 C 0.622 3.378 8 O -0.541 6.541 9 N -0.634 5.634 10 C 0.110 3.890 11 C 0.113 3.887 12 N -0.295 5.295 13 C -0.046 4.046 14 C 0.000 4.000 15 C 0.232 3.768 16 N -0.726 5.726 17 C -0.239 4.239 18 H 0.074 0.926 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.291 1.291 25 N -0.250 5.250 26 N -0.090 5.090 27 C 0.097 3.903 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.170 0.830 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.189 0.811 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.107 0.893 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 23.615 -16.329 29.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.083 5.083 3 C -0.118 4.118 4 C -0.231 4.231 5 C -0.168 4.168 6 C -0.166 4.166 7 C 0.414 3.586 8 O -0.420 6.420 9 N -0.370 5.370 10 C -0.013 4.013 11 C 0.009 3.991 12 N -0.090 5.090 13 C -0.196 4.196 14 C -0.138 4.138 15 C 0.103 3.897 16 N -0.371 5.371 17 C -0.370 4.370 18 H 0.092 0.908 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.740 3.260 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.219 1.219 25 N -0.118 5.118 26 N -0.068 5.068 27 C -0.027 4.027 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.187 0.813 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.165 0.835 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.125 0.875 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.923 22.534 -17.362 29.530 hybrid contribution 0.171 0.671 1.738 1.871 sum -7.752 23.205 -15.624 29.029 Atomic orbital electron populations 1.22378 0.75977 1.05929 1.03878 1.43867 1.06914 1.04865 1.52670 1.22087 0.90746 0.91539 1.07410 1.20885 0.96121 0.95024 1.11064 1.21623 0.94560 0.95674 1.04916 1.19795 0.90615 0.87026 1.19190 1.16455 0.84063 0.82498 0.75581 1.90798 1.15624 1.84238 1.51328 1.49155 1.07052 1.07080 1.73681 1.23652 0.95783 0.78834 1.03053 1.23667 0.88883 0.86494 1.00034 1.47095 1.31451 1.11617 1.18789 1.23328 1.00126 1.03603 0.92507 1.22492 1.02322 0.90276 0.98661 1.18967 0.90877 0.96629 0.83264 1.42315 1.10140 1.70872 1.13763 1.19271 0.93885 1.31573 0.92289 0.90802 1.24765 0.95925 1.01497 0.98770 1.69687 1.07707 1.47330 1.33259 0.86091 0.78652 0.77910 0.83366 1.20447 1.21936 1.21854 1.75127 1.08577 1.25090 1.02967 1.78311 1.15032 0.91374 1.22103 1.23900 0.81642 0.93501 1.03675 0.90502 0.89835 0.87381 0.81260 0.83750 0.83498 0.87800 0.87917 0.83523 0.79392 0.94387 0.94243 0.78112 0.93556 0.87471 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.77 59.85 0.64 1.04 16 2 N -0.41 -3.57 3.16 -120.24 -0.38 -3.95 16 3 C 0.02 0.12 11.38 -16.91 -0.19 -0.07 16 4 C -0.21 -1.50 10.81 -39.98 -0.43 -1.93 16 5 C -0.14 -1.15 9.98 -39.12 -0.39 -1.54 16 6 C -0.05 -0.53 6.88 -81.98 -0.56 -1.09 16 7 C 0.62 7.05 8.01 -12.85 -0.10 6.95 16 8 O -0.54 -7.61 15.29 5.19 0.08 -7.53 16 9 N -0.63 -5.77 3.61 -179.85 -0.65 -6.42 16 10 C 0.11 1.01 8.64 -2.97 -0.03 0.98 16 11 C 0.11 0.93 5.13 -70.14 -0.36 0.57 16 12 N -0.29 -3.71 3.54 -56.29 -0.20 -3.91 16 13 C -0.05 -0.63 10.72 -17.05 -0.18 -0.81 16 14 C 0.00 0.00 6.62 -82.77 -0.55 -0.55 16 15 C 0.23 4.71 6.82 -5.20 -0.04 4.67 16 16 N -0.73 -18.66 5.59 -61.09 -0.34 -19.00 16 17 C -0.24 -6.68 9.99 -15.05 -0.15 -6.83 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 N -0.25 -4.89 12.41 33.29 0.41 -4.47 16 26 N -0.09 -1.49 13.17 60.35 0.79 -0.70 16 27 C 0.10 0.61 6.43 -2.83 -0.02 0.59 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.11 0.94 5.96 -51.93 -0.31 0.63 16 31 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.15 0.87 5.12 -52.49 -0.27 0.60 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.15 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.19 1.90 6.74 -52.49 -0.35 1.54 16 38 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.39 10.71 7.66 -40.82 -0.31 10.40 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.11 0.62 6.31 -51.93 -0.33 0.29 16 43 H 0.11 0.45 6.43 -51.92 -0.33 0.11 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -37.40 365.85 -6.78 -44.18 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.26 Total: 5.24 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.45 Total: 1.51 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: 0.36 Total: -66.32 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.08 Total: -7.53 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.40 -6.78 -44.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105159621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.044 kcal (2) G-P(sol) polarization free energy of solvation -37.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds