Wall clock time and date at job start Tue Mar 31 2020 05:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34481 * 126.83415 * 2 1 4 4 N 1.36445 * 108.85420 * 179.97438 * 3 2 1 5 5 H 0.97010 * 124.84678 * 180.02562 * 4 3 2 6 6 C 1.34656 * 110.30171 * 359.73190 * 4 3 2 7 7 C 1.36766 * 108.39458 * 0.43997 * 6 4 3 8 8 C 1.47264 * 126.94295 * 179.83781 * 7 6 4 9 9 O 1.21626 * 120.00175 * 179.69236 * 8 7 6 10 10 N 1.34777 * 119.99865 * 359.68468 * 8 7 6 11 11 C 1.47587 * 134.49194 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11492 * 155.35831 * 11 10 8 13 13 N 1.46494 * 113.73833 * 137.94973 * 12 11 10 14 14 C 1.35317 * 125.87155 * 275.32706 * 13 12 11 15 15 C 1.35352 * 106.17693 * 180.11507 * 14 13 12 16 16 C 1.50700 * 126.75361 * 179.84844 * 15 14 13 17 17 N 1.46498 * 109.46769 * 94.71485 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 N 1.33772 * 106.49634 * 359.59642 * 15 14 13 27 27 N 1.28636 * 108.88627 * 0.25926 * 26 15 14 28 28 C 1.47585 * 134.49454 * 0.02562 * 10 8 7 29 29 H 1.09000 * 109.46876 * 270.04093 * 1 2 3 30 30 H 1.08990 * 109.47216 * 30.04211 * 1 2 3 31 31 H 1.09004 * 109.47100 * 150.04100 * 1 2 3 32 32 H 1.08001 * 125.57299 * 359.97438 * 3 2 1 33 33 H 1.07998 * 125.80132 * 180.29784 * 6 4 3 34 34 H 1.09000 * 113.76791 * 41.06228 * 11 10 8 35 35 H 1.08999 * 113.76608 * 269.66150 * 11 10 8 36 36 H 1.08997 * 113.74241 * 269.15464 * 12 11 10 37 37 H 1.08002 * 126.91295 * 359.96910 * 14 13 12 38 38 H 1.09004 * 109.47210 * 334.71843 * 16 15 14 39 39 H 1.08994 * 109.47121 * 214.71813 * 16 15 14 40 40 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 41 41 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 42 42 H 1.08992 * 113.76674 * 90.33680 * 28 10 8 43 43 H 1.09002 * 113.76315 * 318.94269 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 0.0006 5 1 4.3841 1.2413 0.0011 6 6 3.6656 -0.6903 0.0069 7 6 2.3864 -1.1741 0.0006 8 6 1.9749 -2.5881 0.0008 9 8 0.7937 -2.8777 0.0003 10 7 2.9074 -3.5612 0.0013 11 6 2.8628 -5.0364 0.0011 12 6 4.2617 -4.9743 -0.6384 13 7 5.2027 -5.9568 -0.0950 14 6 5.9542 -5.8028 1.0198 15 6 6.6740 -6.9416 1.1497 16 6 7.6677 -7.2613 2.2366 17 7 7.0015 -8.0163 3.3007 18 6 7.7116 -8.4248 4.3980 19 1 8.7617 -8.1864 4.4811 20 6 7.0817 -9.1451 5.4036 21 7 5.8020 -9.4359 5.3021 22 14 8.0501 -9.7017 6.9008 23 1 9.4592 -9.2506 6.7747 24 1 7.4503 -9.1132 8.1253 25 1 8.0105 -11.1833 6.9932 26 7 6.3255 -7.7300 0.1266 27 7 5.4522 -7.1175 -0.5923 28 6 4.3831 -3.5798 0.0022 29 1 -0.3633 0.0007 1.0277 30 1 -0.3633 0.8895 -0.5144 31 1 -0.3633 -0.8904 -0.5132 32 1 1.9868 2.1058 -0.0004 33 1 4.5664 -1.2860 0.0133 34 1 2.0981 -5.4528 -0.6547 35 1 2.8548 -5.4758 0.9986 36 1 4.2458 -4.9587 -1.7282 37 1 5.9770 -4.9430 1.6730 38 1 8.0695 -6.3343 2.6457 39 1 8.4803 -7.8577 1.8219 40 1 6.0584 -8.2306 3.2259 41 1 5.3617 -9.9389 6.0050 42 1 4.8216 -3.5912 0.9999 43 1 4.8321 -2.8330 -0.6527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105372613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:18 Heat of formation + Delta-G solvation = 175.957544 kcal Electronic energy + Delta-G solvation = -26881.345596 eV Core-core repulsion = 22967.156323 eV Total energy + Delta-G solvation = -3914.189272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.12793 -41.66558 -40.31733 -37.94952 -35.00591 -33.52345 -32.80221 -31.86940 -30.99631 -29.95628 -28.79256 -27.08364 -26.76957 -25.86031 -24.42262 -22.84751 -22.44550 -20.97724 -20.60861 -20.30740 -19.17548 -18.38373 -17.82833 -17.09754 -16.92450 -16.25537 -15.56757 -15.42015 -14.95616 -14.72342 -14.55612 -14.28429 -13.96317 -13.73170 -13.60317 -13.32030 -13.24953 -13.14105 -12.97252 -12.76595 -12.68944 -12.58881 -12.05655 -11.78992 -11.64385 -11.29280 -10.89970 -10.82981 -10.53319 -10.15991 -10.06213 -9.91231 -9.74025 -9.28213 -8.99688 -8.91322 -8.87491 -8.71152 -6.92278 -5.74164 -3.04090 1.31662 1.70738 1.95694 1.99364 2.57842 2.76367 2.86269 3.24196 3.45483 3.47241 3.50848 3.53430 3.89027 4.23878 4.31017 4.40637 4.60752 4.62071 4.66345 4.74731 4.79610 4.87610 5.08867 5.15521 5.21340 5.33586 5.39234 5.43792 5.46439 5.58762 5.61442 5.76967 5.80327 5.92518 6.16101 6.35880 6.39152 6.46472 6.61782 6.67881 6.75535 6.96246 7.22524 7.71285 7.93516 8.42927 8.78409 9.54824 10.10216 10.45824 11.48550 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.002306 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.880656 B =12138.162456 C =12727.289882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.107 4.107 3 C -0.025 4.025 4 N -0.548 5.548 5 H 0.419 0.581 6 C 0.045 3.955 7 C -0.225 4.225 8 C 0.620 3.380 9 O -0.531 6.531 10 N -0.643 5.643 11 C 0.107 3.893 12 C 0.113 3.887 13 N -0.294 5.294 14 C -0.047 4.047 15 C 0.000 4.000 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.251 5.251 27 N -0.090 5.090 28 C 0.094 3.906 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.188 0.812 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.104 0.896 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 25.721 -14.844 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.152 4.152 4 N -0.142 5.142 5 H 0.256 0.744 6 C -0.092 4.092 7 C -0.236 4.236 8 C 0.413 3.587 9 O -0.407 6.407 10 N -0.380 5.380 11 C -0.016 4.016 12 C 0.009 3.991 13 N -0.089 5.089 14 C -0.197 4.197 15 C -0.138 4.138 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.092 0.908 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.118 5.118 27 N -0.068 5.068 28 C -0.030 4.030 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.188 0.812 33 H 0.191 0.809 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.205 0.795 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.122 0.878 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.767 24.835 -15.882 30.038 hybrid contribution 0.780 0.680 1.755 2.037 sum -4.987 25.515 -14.128 29.589 Atomic orbital electron populations 1.20216 0.89153 1.02674 1.02181 1.20570 0.95738 0.90122 1.04895 1.21620 0.82343 0.99327 1.11923 1.41542 1.08470 1.06697 1.57491 0.74427 1.22240 0.98695 0.83956 1.04279 1.20199 0.92886 0.92050 1.18448 1.16968 0.83848 0.82996 0.74910 1.90790 1.16347 1.83112 1.50463 1.49449 1.06303 1.06739 1.75542 1.23578 0.95177 0.80385 1.02464 1.23705 0.88170 0.86039 1.01139 1.47131 1.29564 1.13425 1.18779 1.23308 0.99065 1.03842 0.93459 1.22490 1.02112 0.91078 0.98126 1.18958 0.90614 0.95701 0.84429 1.42319 1.10535 1.65279 1.18955 1.19264 0.93614 1.28236 0.95981 0.90828 1.24770 0.96018 1.01093 0.99058 1.69692 1.09139 1.44559 1.34524 0.86093 0.78902 0.78197 0.82826 1.20473 1.21923 1.21835 1.75131 1.07869 1.24403 1.04425 1.78310 1.14544 0.92135 1.21817 1.23742 0.82247 0.94714 1.02290 0.91638 0.92216 0.90325 0.81219 0.80904 0.87989 0.88250 0.83668 0.79489 0.94473 0.94278 0.78088 0.93528 0.87797 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.98 36.01 0.36 -0.39 16 2 C -0.11 -0.98 6.35 -102.54 -0.65 -1.63 16 3 C -0.02 -0.15 11.82 -16.83 -0.20 -0.35 16 4 N -0.55 -2.47 5.90 -12.85 -0.08 -2.55 16 5 H 0.42 0.44 8.96 -40.82 -0.37 0.08 16 6 C 0.04 0.28 11.01 -16.85 -0.19 0.09 16 7 C -0.23 -2.19 6.29 -103.35 -0.65 -2.84 16 8 C 0.62 7.42 8.04 -12.59 -0.10 7.32 16 9 O -0.53 -8.29 16.05 5.25 0.08 -8.20 16 10 N -0.64 -6.02 3.61 -179.86 -0.65 -6.66 16 11 C 0.11 1.04 8.64 -2.97 -0.03 1.02 16 12 C 0.11 0.94 5.15 -70.14 -0.36 0.58 16 13 N -0.29 -3.72 3.54 -56.30 -0.20 -3.92 16 14 C -0.05 -0.64 10.72 -17.04 -0.18 -0.82 16 15 C 0.00 -0.01 6.61 -82.78 -0.55 -0.56 16 16 C 0.23 4.71 6.82 -5.19 -0.04 4.67 16 17 N -0.73 -18.67 5.59 -61.09 -0.34 -19.02 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 22 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 N -0.25 -4.92 12.41 33.29 0.41 -4.50 16 27 N -0.09 -1.50 13.17 60.35 0.79 -0.70 16 28 C 0.09 0.57 6.53 -2.97 -0.02 0.55 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.86 6.85 -51.93 -0.36 0.50 16 32 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.17 0.56 5.11 -52.49 -0.27 0.29 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.15 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.19 1.86 6.72 -52.49 -0.35 1.50 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.39 10.75 7.66 -40.82 -0.31 10.43 16 41 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.10 0.56 6.31 -51.93 -0.33 0.23 16 43 H 0.10 0.31 6.29 -51.93 -0.33 -0.01 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -38.85 366.75 -6.83 -45.68 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.24 Total: 4.54 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.85 Total: 0.30 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.67 Total: -65.25 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.85 -6.83 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105372613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.636 kcal (2) G-P(sol) polarization free energy of solvation -38.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds