Wall clock time and date at job start Tue Mar 31 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 114.00023 * 2 1 4 4 H 1.09002 * 109.47159 * 29.99526 * 3 2 1 5 5 C 1.53007 * 109.46698 * 269.99994 * 3 2 1 6 6 C 1.52995 * 109.47121 * 150.00181 * 3 2 1 7 7 N 1.46906 * 109.46978 * 299.99679 * 6 3 2 8 8 C 1.46901 * 110.99793 * 180.02562 * 7 6 3 9 9 C 1.53000 * 109.46769 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.30549 * 52.82436 * 9 8 7 11 11 C 1.54391 * 110.34229 * 290.53382 * 9 8 7 12 12 N 1.48144 * 104.61804 * 217.26816 * 11 9 8 13 13 C 1.34785 * 127.83622 * 219.56806 * 12 11 9 14 14 O 1.21283 * 119.99602 * 0.04544 * 13 12 11 15 15 C 1.50697 * 119.99851 * 180.02562 * 13 12 11 16 16 S 1.80995 * 109.46902 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00101 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99709 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00262 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99902 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99819 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47440 * 89.99631 * 21 19 17 23 23 H 1.48499 * 109.46778 * 210.00013 * 21 19 17 24 24 H 1.48504 * 109.47220 * 329.99662 * 21 19 17 25 25 C 1.48146 * 104.32710 * 39.58451 * 12 11 9 26 26 C 1.54292 * 110.33963 * 175.00020 * 9 8 7 27 27 H 1.09000 * 110.34371 * 359.97438 * 26 9 8 28 28 C 1.53004 * 110.33858 * 237.84494 * 26 9 8 29 29 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47094 * 300.00135 * 1 2 3 31 31 H 1.08994 * 109.47154 * 59.99872 * 1 2 3 32 32 H 1.09006 * 109.46691 * 300.00126 * 5 3 2 33 33 H 1.08997 * 109.47109 * 59.99596 * 5 3 2 34 34 H 1.08995 * 109.46395 * 180.02562 * 5 3 2 35 35 H 1.08995 * 109.46859 * 179.97438 * 6 3 2 36 36 H 1.09002 * 109.47639 * 59.99639 * 6 3 2 37 37 H 1.00898 * 110.99995 * 303.95410 * 7 6 3 38 38 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 39 39 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 40 40 H 1.09003 * 110.40414 * 336.05059 * 11 9 8 41 41 H 1.08997 * 110.40671 * 98.47934 * 11 9 8 42 42 H 1.09000 * 109.46936 * 299.99476 * 15 13 12 43 43 H 1.08997 * 109.47167 * 59.99655 * 15 13 12 44 44 H 0.97002 * 120.00200 * 180.02562 * 20 19 17 45 45 H 1.08997 * 110.40910 * 201.63588 * 25 12 11 46 46 H 1.09000 * 110.50633 * 79.25203 * 25 12 11 47 47 H 1.08996 * 109.47320 * 59.99898 * 28 26 9 48 48 H 1.08998 * 109.46560 * 180.02562 * 28 26 9 49 49 H 1.09004 * 109.46810 * 299.99777 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3589 1.2632 0.7212 7 7 3.1598 0.8159 2.1062 8 6 4.4363 0.7637 2.8313 9 6 4.1889 0.2942 4.2663 10 1 3.6251 -0.6386 4.2671 11 6 3.4352 1.3802 5.0639 12 7 4.0199 1.3189 6.4237 13 6 3.3804 1.4331 7.6046 14 8 2.1805 1.6080 7.6299 15 6 4.1562 1.3432 8.8934 16 16 3.0247 1.5338 10.2932 17 6 4.1643 1.3908 11.6295 18 1 5.2140 1.2340 11.4295 19 6 3.7131 1.4808 12.9390 20 7 4.5645 1.3745 13.9372 21 14 1.8976 1.7527 13.2848 22 1 1.2139 0.4397 13.4017 23 1 1.7432 2.5061 14.5551 24 1 1.2926 2.5285 12.1724 25 6 5.4671 1.1038 6.1910 26 6 5.5287 0.1120 5.0095 27 1 6.3630 0.3565 4.3521 28 6 5.6609 -1.3232 5.5231 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.8830 1.0772 -1.9564 33 1 1.2569 1.8013 -1.9564 34 1 2.6614 2.7668 -1.4425 35 1 3.8024 2.2589 0.7208 36 1 4.0243 0.5693 0.2074 37 1 2.4962 1.4063 2.5850 38 1 4.8868 1.7562 2.8459 39 1 5.1093 0.0665 2.3322 40 1 3.6037 2.3622 4.6217 41 1 2.3692 1.1556 5.0980 42 1 4.6491 0.3729 8.9538 43 1 4.9057 2.1340 8.9222 44 1 4.2492 1.4369 14.8524 45 1 5.9340 0.6706 7.0756 46 1 5.9547 2.0419 5.9257 47 1 5.6242 -2.0151 4.6817 48 1 6.6109 -1.4359 6.0455 49 1 4.8417 -1.5407 6.2085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105846509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:05 Heat of formation + Delta-G solvation = -87.555030 kcal Electronic energy + Delta-G solvation = -26019.166979 eV Core-core repulsion = 22300.242487 eV Total energy + Delta-G solvation = -3718.924491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.13447 -38.83342 -37.87007 -35.89037 -33.01402 -32.43512 -32.16907 -30.54118 -29.06581 -27.06989 -26.59075 -26.00181 -25.56028 -24.29157 -21.90659 -21.66953 -20.02017 -19.43843 -17.69197 -17.37284 -16.68026 -16.46004 -15.85854 -15.61829 -15.56092 -15.06390 -14.80817 -14.59650 -14.41497 -14.04727 -13.79156 -13.74731 -13.53754 -13.26780 -13.02802 -12.91126 -12.79051 -12.65553 -12.35790 -12.30024 -12.02836 -11.82038 -11.74964 -11.57279 -11.25633 -11.13862 -11.00489 -10.92652 -10.85266 -10.79757 -10.57568 -9.90348 -9.85243 -9.50167 -8.99991 -8.74629 -8.63884 -8.49131 -6.91588 -6.28520 -4.00218 2.69077 2.95566 3.20677 3.33873 3.43010 3.51132 3.60528 3.66617 4.31495 4.33819 4.37737 4.45585 4.58127 4.66021 4.72858 4.79407 4.93631 4.98883 5.02048 5.06887 5.09610 5.10569 5.10847 5.20741 5.21058 5.25046 5.31868 5.36232 5.42986 5.44611 5.52196 5.53410 5.63068 5.66494 5.69868 5.79051 5.86507 5.88073 5.99591 6.01940 6.11793 6.35762 6.63634 6.89125 7.03732 7.65187 7.94498 8.41870 8.45348 9.17661 10.80637 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.002156 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.400370 B =12985.635957 C =13848.481652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.086 3.914 4 H 0.058 0.942 5 C -0.175 4.175 6 C 0.062 3.938 7 N -0.682 5.682 8 C 0.071 3.929 9 C -0.098 4.098 10 H 0.094 0.906 11 C 0.110 3.890 12 N -0.626 5.626 13 C 0.553 3.447 14 O -0.519 6.519 15 C -0.117 4.117 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.102 3.898 26 C -0.099 4.099 27 H 0.085 0.915 28 C -0.144 4.144 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.340 0.660 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.271 0.729 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -0.620 -30.715 30.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.028 3.972 4 H 0.076 0.924 5 C -0.233 4.233 6 C -0.068 4.068 7 N -0.313 5.313 8 C -0.058 4.058 9 C -0.117 4.117 10 H 0.112 0.888 11 C -0.013 4.013 12 N -0.363 5.363 13 C 0.341 3.659 14 O -0.394 6.394 15 C -0.267 4.267 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.021 4.021 26 C -0.119 4.119 27 H 0.103 0.897 28 C -0.202 4.202 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.158 0.842 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.995 -1.178 -30.510 30.549 hybrid contribution 0.813 1.103 0.473 1.449 sum -0.182 -0.076 -30.038 30.038 Atomic orbital electron populations 1.22760 0.81463 1.02713 0.99568 1.88001 1.19111 1.26679 1.94902 1.22122 0.94613 0.85418 0.95067 0.92370 1.22264 1.02578 1.01630 0.96818 1.22077 0.96202 0.98920 0.89579 1.60375 1.11215 1.57732 1.01980 1.22031 0.91283 0.99538 0.92982 1.22251 0.96409 1.00019 0.93054 0.88804 1.22309 0.99372 0.97699 0.81954 1.48920 1.08757 1.73652 1.04977 1.19943 0.87465 0.75286 0.83160 1.90705 1.14403 1.47941 1.86313 1.23243 1.02885 1.05587 0.95035 1.84789 1.14089 1.95460 0.97253 1.22306 0.96027 1.57406 0.91075 0.89396 1.24710 0.98344 0.93310 0.94950 1.69936 1.34693 1.47817 0.99213 0.86734 0.85109 0.80149 0.79862 1.19186 1.19945 1.15933 1.22482 0.82251 0.98622 0.98763 1.22113 0.97304 0.96144 0.96365 0.89670 1.21850 1.02245 0.94799 1.01264 0.89721 0.93988 0.94623 0.91582 0.92240 0.91637 0.93987 0.90105 0.84232 0.95003 0.90509 0.91993 0.89854 0.88595 0.88618 0.91949 0.89722 0.91145 0.92322 0.92272 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.37 -3.40 10.21 -35.23 -0.36 -3.76 16 3 C 0.09 0.60 2.93 -26.73 -0.08 0.52 16 4 H 0.06 0.38 7.79 -51.93 -0.40 -0.03 16 5 C -0.17 -0.96 9.53 37.16 0.35 -0.60 16 6 C 0.06 0.42 5.38 -3.82 -0.02 0.40 16 7 N -0.68 -5.47 6.37 -113.78 -0.72 -6.20 16 8 C 0.07 0.52 4.86 -3.82 -0.02 0.50 16 9 C -0.10 -0.87 2.95 -89.21 -0.26 -1.13 16 10 H 0.09 0.97 7.71 -51.93 -0.40 0.57 16 11 C 0.11 1.24 5.88 -2.41 -0.01 1.23 16 12 N -0.63 -8.75 3.32 -169.30 -0.56 -9.31 16 13 C 0.55 10.38 7.93 -10.98 -0.09 10.30 16 14 O -0.52 -11.67 16.13 5.56 0.09 -11.58 16 15 C -0.12 -2.34 5.14 36.00 0.18 -2.16 16 16 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 17 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 21 Si 0.86 21.94 27.74 -169.99 -4.72 17.22 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 C 0.10 1.06 6.47 -2.41 -0.02 1.05 16 26 C -0.10 -0.83 3.30 -89.21 -0.29 -1.12 16 27 H 0.09 0.56 7.71 -51.93 -0.40 0.16 16 28 C -0.14 -1.27 8.91 37.16 0.33 -0.94 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.04 0.20 7.87 -51.93 -0.41 -0.21 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.34 2.69 8.05 -39.29 -0.32 2.37 16 38 H 0.03 0.22 7.98 -51.93 -0.41 -0.20 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.62 7.75 -51.93 -0.40 0.22 16 41 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 42 H 0.10 1.80 7.95 -51.92 -0.41 1.39 16 43 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.08 0.90 7.03 -51.93 -0.36 0.54 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -34.42 406.44 -8.97 -43.39 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -8.99 Total: -1.67 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 1.39 Total: -2.72 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.51 Total: -41.34 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.27 Total: -15.34 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.22 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.42 -8.97 -43.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105846509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.167 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds