Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00265 * 2 1 4 4 C 1.53002 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46898 * 175.00013 * 4 3 2 6 6 C 1.53002 * 109.46902 * 54.99852 * 4 3 2 7 7 N 1.46905 * 109.46811 * 295.00185 * 4 3 2 8 8 C 1.46902 * 110.99723 * 205.00031 * 7 4 3 9 9 C 1.52998 * 109.47227 * 179.97438 * 8 7 4 10 10 H 1.09003 * 110.65364 * 51.80759 * 9 8 7 11 11 C 1.54945 * 110.73800 * 288.42016 * 9 8 7 12 12 N 1.48118 * 103.25072 * 204.28449 * 11 9 8 13 13 C 1.34774 * 127.03156 * 219.33154 * 12 11 9 14 14 O 1.21281 * 120.00080 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00070 * 179.97438 * 13 12 11 16 16 S 1.81006 * 109.47517 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00058 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00272 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99579 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00368 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99857 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46923 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47129 * 120.00222 * 21 19 17 24 24 H 1.48503 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.47484 * 105.93455 * 39.29154 * 12 11 9 26 26 C 1.54007 * 107.08285 * 334.54986 * 25 12 11 27 27 H 1.09004 * 110.32250 * 120.19906 * 26 25 12 28 28 C 1.52996 * 110.32644 * 242.41137 * 26 25 12 29 29 H 1.09000 * 109.47146 * 59.99665 * 1 2 3 30 30 H 1.08999 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46892 * 299.99478 * 1 2 3 32 32 H 1.09000 * 109.46676 * 60.00060 * 3 2 1 33 33 H 1.09004 * 109.47151 * 300.00540 * 3 2 1 34 34 H 1.08999 * 109.46764 * 180.02562 * 6 4 3 35 35 H 1.08997 * 109.47476 * 299.99807 * 6 4 3 36 36 H 1.08996 * 109.46933 * 60.00303 * 6 4 3 37 37 H 1.00898 * 110.99760 * 81.04648 * 7 4 3 38 38 H 1.08999 * 109.46913 * 59.99656 * 8 7 4 39 39 H 1.09007 * 109.47058 * 300.00158 * 8 7 4 40 40 H 1.08996 * 110.65893 * 322.72131 * 11 9 8 41 41 H 1.08999 * 110.66652 * 85.67615 * 11 9 8 42 42 H 1.09004 * 109.47255 * 300.00477 * 15 13 12 43 43 H 1.09000 * 109.47300 * 60.00021 * 15 13 12 44 44 H 0.97004 * 120.00257 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.91322 * 215.18795 * 25 12 11 46 46 H 1.08997 * 109.91328 * 93.91427 * 25 12 11 47 47 H 1.09004 * 109.46923 * 58.55325 * 28 26 25 48 48 H 1.09005 * 109.47286 * 178.54495 * 28 26 25 49 49 H 1.08999 * 109.47678 * 298.54826 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 6 3.9781 0.3197 -1.1826 7 7 3.9779 0.5622 1.2543 8 6 5.3599 0.9448 1.5732 9 6 5.7839 0.2793 2.8839 10 1 5.5930 -0.7933 2.8499 11 6 5.0608 0.9313 4.0893 12 7 5.9672 0.6437 5.2250 13 6 5.6131 0.2998 6.4790 14 8 4.4405 0.1988 6.7720 15 6 6.6741 0.0408 7.5173 16 16 5.8876 -0.3971 9.0877 17 6 7.3171 -0.6383 10.0891 18 1 8.3017 -0.5046 9.6659 19 6 7.1777 -0.9991 11.4221 20 7 5.9777 -1.1615 11.9380 21 14 8.6933 -1.2541 12.4841 22 1 9.9129 -1.0124 11.6722 23 1 8.6625 -0.3059 13.6265 24 1 8.7091 -2.6474 12.9976 25 6 7.3363 0.8097 4.7024 26 6 7.2743 0.5609 3.1839 27 1 7.6093 1.4450 2.6414 28 6 8.1302 -0.6504 2.8084 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 5.0646 0.2333 -1.1828 35 1 3.5351 -0.6722 -1.0931 36 1 3.6498 0.7815 -2.1137 37 1 3.8806 -0.4413 1.2141 38 1 5.4217 2.0279 1.6793 39 1 6.0213 0.6202 0.7698 40 1 4.9592 2.0064 3.9411 41 1 4.0850 0.4720 4.2468 42 1 7.3111 -0.7805 7.1889 43 1 7.2784 0.9381 7.6511 44 1 5.8803 -1.4133 12.8697 45 1 8.0027 0.0852 5.1705 46 1 7.6883 1.8225 4.8986 47 1 7.7747 -1.5279 3.3486 48 1 8.0558 -0.8295 1.7357 49 1 9.1697 -0.4570 3.0733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105847721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -88.655880 kcal Electronic energy + Delta-G solvation = -26076.878646 eV Core-core repulsion = 22357.906418 eV Total energy + Delta-G solvation = -3718.972228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.98419 -38.72868 -37.69202 -36.28763 -33.07368 -32.39948 -31.86002 -29.95444 -28.27115 -27.62142 -26.36901 -25.98970 -25.49445 -24.65281 -21.97342 -21.21677 -20.06853 -19.22273 -17.64229 -16.89894 -16.49981 -16.28287 -16.20562 -15.60510 -15.41817 -14.98359 -14.78151 -14.68737 -14.43913 -14.05386 -13.79377 -13.61028 -13.38859 -13.15296 -12.89890 -12.84121 -12.59844 -12.33232 -12.23387 -12.11828 -11.89467 -11.81667 -11.60013 -11.43678 -11.34557 -11.05164 -10.98860 -10.93133 -10.77586 -10.72667 -10.71673 -9.91857 -9.77137 -9.30709 -9.04705 -8.65986 -8.42480 -8.18439 -6.46398 -6.18819 -3.88939 2.99400 3.15513 3.23325 3.28689 3.33422 3.52931 3.66635 3.75508 4.22947 4.37235 4.47847 4.49451 4.58871 4.76524 4.89201 4.96626 5.01594 5.07156 5.10678 5.11217 5.15406 5.16190 5.23810 5.30172 5.32735 5.38432 5.39541 5.46016 5.49053 5.52517 5.57571 5.63662 5.72460 5.77852 5.85303 5.87367 5.92493 6.02426 6.05637 6.14336 6.19495 6.52669 6.69908 6.90984 7.13544 7.62601 7.82539 8.38340 8.65972 9.26405 10.88657 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002177 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.627956 B =12856.131900 C =13958.447074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.071 3.929 4 C 0.087 3.913 5 H 0.088 0.912 6 C -0.178 4.178 7 N -0.680 5.680 8 C 0.070 3.930 9 C -0.096 4.096 10 H 0.083 0.917 11 C 0.123 3.877 12 N -0.630 5.630 13 C 0.551 3.449 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.062 6.062 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.105 3.895 26 C -0.100 4.100 27 H 0.084 0.916 28 C -0.144 4.144 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.349 0.651 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.268 0.732 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 5.442 -29.329 29.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.006 4.006 4 C -0.023 4.023 5 H 0.106 0.894 6 C -0.237 4.237 7 N -0.311 5.311 8 C -0.059 4.059 9 C -0.116 4.116 10 H 0.102 0.898 11 C 0.000 4.000 12 N -0.367 5.367 13 C 0.340 3.660 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.019 4.019 26 C -0.119 4.119 27 H 0.102 0.898 28 C -0.201 4.201 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.169 0.831 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.165 5.541 -28.201 28.914 hybrid contribution 2.689 -0.276 -0.364 2.728 sum -0.476 5.265 -28.565 29.050 Atomic orbital electron populations 1.22709 0.81200 1.02670 0.99796 1.87853 1.19461 1.27792 1.95356 1.22600 0.93002 0.84972 1.00059 1.21595 0.93571 0.98618 0.88505 0.89379 1.22399 1.00904 1.01612 0.98820 1.60518 1.21978 1.15692 1.32917 1.21985 0.88490 1.00253 0.95172 1.22373 0.94126 1.00829 0.94240 0.89819 1.22295 0.94815 0.99445 0.83462 1.48834 1.07573 1.70544 1.09776 1.19960 0.89997 0.75408 0.80641 1.90709 1.19269 1.50367 1.78681 1.23501 1.00812 1.04474 1.00870 1.85408 1.11131 1.89435 0.97504 1.22901 0.93275 1.54296 0.97690 0.90919 1.24999 0.96929 0.94757 0.96972 1.70034 1.21541 1.44456 1.14247 0.86118 0.81616 0.77994 0.79769 1.19632 1.20578 1.20580 1.22136 0.84965 1.01523 0.93243 1.22093 0.95126 0.99373 0.95353 0.89812 1.21857 0.99530 0.97456 1.01259 0.94501 0.89776 0.93926 0.92353 0.93506 0.92916 0.91369 0.92344 0.83142 0.90760 0.94842 0.91573 0.89468 0.89434 0.89419 0.92262 0.90518 0.91676 0.92179 0.92585 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.50 9.77 -35.23 -0.34 -3.85 16 3 C 0.07 0.53 5.77 37.16 0.21 0.75 16 4 C 0.09 0.61 2.99 -67.71 -0.20 0.40 16 5 H 0.09 0.53 7.80 -51.93 -0.40 0.13 16 6 C -0.18 -1.14 8.96 37.16 0.33 -0.81 16 7 N -0.68 -5.59 6.12 -106.72 -0.65 -6.24 16 8 C 0.07 0.52 4.80 -3.82 -0.02 0.50 16 9 C -0.10 -0.89 2.77 -88.75 -0.25 -1.13 16 10 H 0.08 0.85 7.86 -51.93 -0.41 0.45 16 11 C 0.12 1.57 6.45 -2.13 -0.01 1.55 16 12 N -0.63 -9.61 3.29 -169.77 -0.56 -10.17 16 13 C 0.55 11.20 7.91 -10.99 -0.09 11.11 16 14 O -0.52 -12.56 16.07 5.56 0.09 -12.47 16 15 C -0.15 -3.11 5.23 36.00 0.19 -2.93 16 16 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 17 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 21 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 C 0.11 1.18 6.42 -2.98 -0.02 1.17 16 26 C -0.10 -0.84 3.17 -89.25 -0.28 -1.12 16 27 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 28 C -0.14 -1.11 8.89 37.16 0.33 -0.78 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.32 7.45 -51.93 -0.39 -0.07 16 35 H 0.07 0.52 7.55 -51.93 -0.39 0.13 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.35 3.08 8.47 -39.29 -0.33 2.75 16 38 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 39 H 0.03 0.22 7.44 -51.93 -0.39 -0.17 16 40 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 41 H 0.09 1.32 7.86 -51.93 -0.41 0.91 16 42 H 0.09 1.74 7.91 -51.91 -0.41 1.33 16 43 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.08 0.87 7.08 -51.93 -0.37 0.51 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 408.07 15.07 6.15 6.15 Total: -1.00 -34.82 408.07 -9.23 -44.05 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.92 Total: -1.32 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 1.51 Total: -3.09 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.48 Total: -42.18 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.25 Total: -16.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.82 -9.23 -44.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105847721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.602 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds