Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00265 * 2 1 4 4 C 1.53002 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46898 * 175.00013 * 4 3 2 6 6 C 1.53002 * 109.46902 * 54.99852 * 4 3 2 7 7 N 1.46905 * 109.46811 * 295.00185 * 4 3 2 8 8 C 1.46902 * 110.99723 * 205.00031 * 7 4 3 9 9 C 1.52998 * 109.47227 * 179.97438 * 8 7 4 10 10 H 1.09003 * 110.65364 * 51.80759 * 9 8 7 11 11 C 1.54945 * 110.73800 * 288.42016 * 9 8 7 12 12 N 1.48118 * 103.25072 * 204.28449 * 11 9 8 13 13 C 1.34774 * 127.03156 * 219.33154 * 12 11 9 14 14 O 1.21281 * 120.00080 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00070 * 179.97438 * 13 12 11 16 16 S 1.81006 * 109.47517 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00058 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00272 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99579 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00368 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99857 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46923 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47129 * 120.00222 * 21 19 17 24 24 H 1.48503 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.47484 * 105.93455 * 39.29154 * 12 11 9 26 26 C 1.54007 * 107.08285 * 334.54986 * 25 12 11 27 27 H 1.09004 * 110.32250 * 120.19906 * 26 25 12 28 28 C 1.52996 * 110.32644 * 242.41137 * 26 25 12 29 29 H 1.09000 * 109.47146 * 59.99665 * 1 2 3 30 30 H 1.08999 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46892 * 299.99478 * 1 2 3 32 32 H 1.09000 * 109.46676 * 60.00060 * 3 2 1 33 33 H 1.09004 * 109.47151 * 300.00540 * 3 2 1 34 34 H 1.08999 * 109.46764 * 180.02562 * 6 4 3 35 35 H 1.08997 * 109.47476 * 299.99807 * 6 4 3 36 36 H 1.08996 * 109.46933 * 60.00303 * 6 4 3 37 37 H 1.00898 * 110.99760 * 81.04648 * 7 4 3 38 38 H 1.08999 * 109.46913 * 59.99656 * 8 7 4 39 39 H 1.09007 * 109.47058 * 300.00158 * 8 7 4 40 40 H 1.08996 * 110.65893 * 322.72131 * 11 9 8 41 41 H 1.08999 * 110.66652 * 85.67615 * 11 9 8 42 42 H 1.09004 * 109.47255 * 300.00477 * 15 13 12 43 43 H 1.09000 * 109.47300 * 60.00021 * 15 13 12 44 44 H 0.97004 * 120.00257 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.91322 * 215.18795 * 25 12 11 46 46 H 1.08997 * 109.91328 * 93.91427 * 25 12 11 47 47 H 1.09004 * 109.46923 * 58.55325 * 28 26 25 48 48 H 1.09005 * 109.47286 * 178.54495 * 28 26 25 49 49 H 1.08999 * 109.47678 * 298.54826 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 6 3.9781 0.3197 -1.1826 7 7 3.9779 0.5622 1.2543 8 6 5.3599 0.9448 1.5732 9 6 5.7839 0.2793 2.8839 10 1 5.5930 -0.7933 2.8499 11 6 5.0608 0.9313 4.0893 12 7 5.9672 0.6437 5.2250 13 6 5.6131 0.2998 6.4790 14 8 4.4405 0.1988 6.7720 15 6 6.6741 0.0408 7.5173 16 16 5.8876 -0.3971 9.0877 17 6 7.3171 -0.6383 10.0891 18 1 8.3017 -0.5046 9.6659 19 6 7.1777 -0.9991 11.4221 20 7 5.9777 -1.1615 11.9380 21 14 8.6933 -1.2541 12.4841 22 1 9.9129 -1.0124 11.6722 23 1 8.6625 -0.3059 13.6265 24 1 8.7091 -2.6474 12.9976 25 6 7.3363 0.8097 4.7024 26 6 7.2743 0.5609 3.1839 27 1 7.6093 1.4450 2.6414 28 6 8.1302 -0.6504 2.8084 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 5.0646 0.2333 -1.1828 35 1 3.5351 -0.6722 -1.0931 36 1 3.6498 0.7815 -2.1137 37 1 3.8806 -0.4413 1.2141 38 1 5.4217 2.0279 1.6793 39 1 6.0213 0.6202 0.7698 40 1 4.9592 2.0064 3.9411 41 1 4.0850 0.4720 4.2468 42 1 7.3111 -0.7805 7.1889 43 1 7.2784 0.9381 7.6511 44 1 5.8803 -1.4133 12.8697 45 1 8.0027 0.0852 5.1705 46 1 7.6883 1.8225 4.8986 47 1 7.7747 -1.5279 3.3486 48 1 8.0558 -0.8295 1.7357 49 1 9.1697 -0.4570 3.0733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105847721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = -113.198440 kcal Electronic energy + Delta-G solvation = -26077.942891 eV Core-core repulsion = 22357.906418 eV Total energy + Delta-G solvation = -3720.036473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14839 -39.48554 -38.84211 -37.00322 -34.59869 -34.15107 -32.55893 -31.31252 -29.32628 -28.15294 -27.70552 -27.24220 -26.57213 -25.61683 -22.80058 -21.79438 -20.93380 -20.63120 -19.54511 -17.98820 -17.55860 -17.18904 -16.93713 -16.88967 -16.64148 -16.33155 -15.93248 -15.75809 -15.49942 -15.33706 -14.83995 -14.59113 -14.45382 -14.06559 -13.97274 -13.73957 -13.69429 -13.33693 -13.21029 -13.09051 -12.91836 -12.87218 -12.74828 -12.65573 -12.59358 -12.38526 -12.03416 -11.90371 -11.76132 -11.64648 -11.53672 -11.41166 -11.16717 -10.93649 -10.51996 -10.29290 -9.71025 -9.22862 -8.69641 -8.35509 -6.14636 1.23394 1.41270 1.44494 1.56632 1.56904 2.10594 2.26311 2.98098 2.98440 3.10034 3.26855 3.57607 3.62329 3.80323 3.97032 4.01282 4.17103 4.23219 4.26370 4.36047 4.41677 4.42647 4.46637 4.52210 4.54733 4.60125 4.63182 4.68474 4.71583 4.78663 4.81368 4.86748 4.89906 4.93897 4.98865 5.06710 5.11980 5.16641 5.21436 5.35641 5.37268 5.40779 5.56232 6.14221 6.19140 6.35039 6.45377 6.49287 7.05276 7.12345 8.74164 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002177 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.627956 B =12856.131900 C =13958.447074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.068 3.932 4 C 0.088 3.912 5 H 0.103 0.897 6 C -0.170 4.170 7 N -0.695 5.695 8 C 0.079 3.921 9 C -0.083 4.083 10 H 0.072 0.928 11 C 0.119 3.881 12 N -0.622 5.622 13 C 0.547 3.453 14 O -0.570 6.570 15 C -0.118 4.118 16 S -0.153 6.153 17 C -0.544 4.544 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.002 2.998 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.273 1.273 25 C 0.093 3.907 26 C -0.087 4.087 27 H 0.114 0.886 28 C -0.141 4.141 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.343 0.657 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.271 0.729 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 6.401 -31.588 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C -0.009 4.009 4 C -0.022 4.022 5 H 0.121 0.879 6 C -0.229 4.229 7 N -0.327 5.327 8 C -0.051 4.051 9 C -0.103 4.103 10 H 0.090 0.910 11 C -0.003 4.003 12 N -0.357 5.357 13 C 0.335 3.665 14 O -0.449 6.449 15 C -0.269 4.269 16 S 0.074 5.926 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.823 3.177 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.029 4.029 26 C -0.107 4.107 27 H 0.132 0.868 28 C -0.199 4.199 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.162 0.838 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.059 0.941 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.185 6.521 -30.528 31.218 hybrid contribution 1.729 -0.530 0.197 1.819 sum 1.544 5.990 -30.331 30.956 Atomic orbital electron populations 1.22812 0.80424 1.03222 1.00307 1.87826 1.20494 1.28810 1.95469 1.22699 0.93578 0.84450 1.00202 1.21652 0.93121 0.99275 0.88103 0.87931 1.22308 1.01165 1.00610 0.98834 1.60522 1.22741 1.15406 1.33998 1.21940 0.88372 1.00502 0.94247 1.22280 0.94422 0.99980 0.93638 0.91004 1.22479 0.93578 1.00312 0.83911 1.48803 1.10292 1.68044 1.08537 1.19755 0.88851 0.75767 0.82105 1.90684 1.20997 1.53260 1.79996 1.23284 1.00681 1.05605 0.97296 1.85615 1.14237 1.90151 1.02565 1.23211 0.93247 1.54510 0.98226 0.89906 1.26176 1.00650 0.93982 0.98490 1.70199 1.24357 1.45407 1.14849 0.84869 0.77220 0.78100 0.77516 1.17929 1.19833 1.19859 1.22549 0.82406 1.02698 0.95230 1.22097 0.94313 1.01045 0.93226 0.86799 1.21845 0.99777 0.96173 1.02080 0.93015 0.89306 0.94352 0.93616 0.91899 0.92181 0.92956 0.91584 0.83824 0.89791 0.92897 0.90208 0.92589 0.87774 0.87645 0.91953 0.90491 0.89799 0.94054 0.90947 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -7.29 9.77 -148.98 -1.46 -8.75 16 3 C 0.07 0.96 5.77 71.98 0.42 1.37 16 4 C 0.09 1.07 2.99 44.92 0.13 1.20 16 5 H 0.10 0.94 7.80 -2.39 -0.02 0.93 16 6 C -0.17 -1.83 8.96 71.98 0.65 -1.19 16 7 N -0.70 -10.56 6.12 -491.55 -3.01 -13.57 16 8 C 0.08 0.93 4.80 86.30 0.41 1.35 16 9 C -0.08 -1.38 2.77 -9.58 -0.03 -1.41 16 10 H 0.07 1.40 7.86 -2.39 -0.02 1.38 16 11 C 0.12 2.98 6.45 86.73 0.56 3.54 16 12 N -0.62 -18.58 3.29 -809.41 -2.66 -21.24 16 13 C 0.55 22.67 7.91 87.66 0.69 23.36 16 14 O -0.57 -29.19 16.07 -3.03 -0.05 -29.24 16 15 C -0.12 -5.04 5.23 71.23 0.37 -4.66 16 16 S -0.15 -8.86 20.57 -56.49 -1.16 -10.02 16 17 C -0.54 -31.80 9.50 67.95 0.65 -31.16 16 18 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 19 C 0.01 0.67 5.49 84.86 0.47 1.14 16 20 N -0.91 -57.00 13.22 21.65 0.29 -56.72 16 21 Si 1.00 44.19 29.55 68.60 2.03 46.21 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 C 0.09 1.86 6.42 86.53 0.56 2.42 16 26 C -0.09 -1.17 3.17 -9.91 -0.03 -1.20 16 27 H 0.11 0.95 7.85 -2.38 -0.02 0.94 16 28 C -0.14 -1.72 8.89 71.98 0.64 -1.08 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.06 0.56 7.45 -2.39 -0.02 0.54 16 35 H 0.05 0.74 7.55 -2.39 -0.02 0.72 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.34 5.88 8.47 -89.70 -0.76 5.12 16 38 H 0.08 0.89 7.90 -2.39 -0.02 0.87 16 39 H 0.05 0.47 7.44 -2.38 -0.02 0.46 16 40 H 0.08 1.80 7.94 -2.39 -0.02 1.78 16 41 H 0.06 1.77 7.86 -2.39 -0.02 1.75 16 42 H 0.10 4.08 7.91 -2.39 -0.02 4.06 16 43 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 44 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.08 1.56 7.08 -2.39 -0.02 1.54 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.04 0.67 8.13 -2.38 -0.02 0.65 16 48 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -79.54 408.07 0.86 -78.68 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.15 Total: 19.31 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.73 Total: -4.68 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -5.38 Total: -91.53 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.50 Total: -37.99 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -79.54 0.86 -78.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105847721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.516 kcal (2) G-P(sol) polarization free energy of solvation -79.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds