Wall clock time and date at job start Tue Mar 31 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47230 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47008 * 64.99881 * 5 4 3 7 7 C 1.46901 * 110.99887 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.47204 * 180.02562 * 7 6 5 9 9 H 1.08997 * 110.30165 * 54.29822 * 8 7 6 10 10 C 1.54386 * 110.34009 * 292.12581 * 8 7 6 11 11 N 1.48321 * 104.53287 * 217.33133 * 10 8 7 12 12 C 1.34777 * 127.77006 * 219.51174 * 11 10 8 13 13 O 1.21279 * 119.99727 * 359.91407 * 12 11 10 14 14 C 1.50695 * 119.99787 * 179.91149 * 12 11 10 15 15 S 1.81007 * 109.46915 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99897 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99696 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.99678 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00365 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99722 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47348 * 60.00133 * 20 18 16 22 22 H 1.48507 * 109.46862 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46893 * 299.99495 * 20 18 16 24 24 C 1.48150 * 104.38988 * 39.46423 * 11 10 8 25 25 C 1.54282 * 110.34355 * 176.47561 * 8 7 6 26 26 H 1.09006 * 110.34142 * 359.97438 * 25 8 7 27 27 C 1.53004 * 110.34061 * 237.84944 * 25 8 7 28 28 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 33 33 H 1.09001 * 109.46918 * 299.99649 * 4 3 2 34 34 H 1.08999 * 109.46857 * 59.99535 * 4 3 2 35 35 H 1.08999 * 109.47305 * 185.00032 * 5 4 3 36 36 H 1.09004 * 109.47201 * 305.00192 * 5 4 3 37 37 H 1.00896 * 111.00289 * 303.95202 * 6 5 4 38 38 H 1.08994 * 109.47280 * 299.99933 * 7 6 5 39 39 H 1.09002 * 109.47560 * 60.00319 * 7 6 5 40 40 H 1.08993 * 110.40908 * 336.03995 * 10 8 7 41 41 H 1.08998 * 110.40794 * 98.48112 * 10 8 7 42 42 H 1.08997 * 109.47567 * 300.00170 * 14 12 11 43 43 H 1.09001 * 109.47240 * 60.00803 * 14 12 11 44 44 H 0.96994 * 119.99900 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.40589 * 201.68348 * 24 11 10 46 46 H 1.09000 * 110.50782 * 79.30577 * 24 11 10 47 47 H 1.08996 * 109.47222 * 60.00009 * 27 25 8 48 48 H 1.09004 * 109.46837 * 180.02562 * 27 25 8 49 49 H 1.09000 * 109.46971 * 299.99946 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 7 3.3866 3.5627 1.2540 7 6 3.7499 4.9856 1.2892 8 6 3.2781 5.6000 2.6088 9 1 3.6670 5.0293 3.4520 10 6 1.7357 5.6465 2.6579 11 7 1.4235 6.9247 3.3424 12 6 0.4557 7.1599 4.2506 13 8 -0.2853 6.2630 4.5931 14 6 0.2946 8.5372 4.8403 15 16 -1.0790 8.5318 6.0191 16 6 -1.0429 10.2152 6.5386 17 1 -0.3075 10.8913 6.1282 18 6 -1.9589 10.6719 7.4760 19 7 -2.8543 9.8474 7.9774 20 14 -1.9212 12.4566 8.0262 21 1 -2.1373 13.3409 6.8531 22 1 -2.9950 12.6894 9.0254 23 1 -0.6018 12.7584 8.6373 24 6 2.4162 7.8831 2.8032 25 6 3.7266 7.0730 2.7053 26 1 4.2835 7.3588 1.8129 27 6 4.5820 7.2876 3.9556 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9764 0.8892 34 1 3.8333 0.9766 -0.8908 35 1 4.9082 3.0253 -0.0912 36 1 3.3493 3.4411 -0.8430 37 1 2.3949 3.4388 1.3921 38 1 4.8321 5.0865 1.2084 39 1 3.2735 5.5030 0.4564 40 1 1.3231 5.6454 1.6491 41 1 1.3480 4.8029 3.2290 42 1 1.2127 8.8222 5.3540 43 1 0.0872 9.2516 4.0436 44 1 -3.4946 10.1667 8.6322 45 1 2.5399 8.7254 3.4839 46 1 2.1117 8.2340 1.8172 47 1 5.4645 6.6498 3.9061 48 1 4.8904 8.3317 4.0100 49 1 4.0000 7.0344 4.8418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105849835.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:00 Heat of formation + Delta-G solvation = -92.180948 kcal Electronic energy + Delta-G solvation = -25871.435090 eV Core-core repulsion = 22152.310004 eV Total energy + Delta-G solvation = -3719.125086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.01802 -38.60611 -37.76087 -35.91533 -32.84464 -32.40716 -31.97735 -30.78011 -29.43867 -27.73676 -26.48401 -25.52224 -24.79247 -23.11940 -22.43294 -21.78822 -19.95762 -19.30057 -17.65887 -17.17989 -16.61324 -16.54840 -16.46326 -15.69235 -15.13159 -14.95337 -14.78767 -14.72845 -14.26148 -14.02441 -13.86555 -13.56132 -13.35056 -13.27117 -12.96962 -12.90093 -12.59622 -12.47683 -12.17968 -11.92510 -11.88263 -11.74346 -11.65022 -11.49043 -11.40839 -11.02431 -11.02370 -10.90545 -10.79398 -10.75247 -10.69843 -9.94801 -9.79966 -9.34516 -9.04015 -8.73518 -8.51602 -8.20905 -6.47744 -6.19321 -3.89939 2.94500 3.11418 3.24839 3.27396 3.30640 3.32613 3.64705 3.77188 4.22298 4.39185 4.46197 4.63368 4.64699 4.71516 4.85658 4.91703 4.98500 5.02421 5.03280 5.05711 5.13571 5.15506 5.20165 5.21942 5.34565 5.38045 5.45823 5.47200 5.51368 5.56297 5.59797 5.61222 5.69556 5.77732 5.83374 5.89786 5.92312 5.94945 6.04726 6.15013 6.19084 6.45132 6.67755 6.85837 7.11194 7.61156 7.78956 8.37122 8.61751 9.25579 10.88062 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.002201 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.775774 B =12720.235667 C =14144.964077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.391 6.391 4 C 0.062 3.938 5 C 0.062 3.938 6 N -0.690 5.690 7 C 0.070 3.930 8 C -0.098 4.098 9 H 0.092 0.908 10 C 0.110 3.890 11 N -0.628 5.628 12 C 0.553 3.447 13 O -0.516 6.516 14 C -0.146 4.146 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.104 3.896 25 C -0.100 4.100 26 H 0.084 0.916 27 C -0.144 4.144 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.352 0.648 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.444 -14.056 -18.886 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.311 6.311 4 C -0.015 4.015 5 C -0.067 4.067 6 N -0.322 5.322 7 C -0.060 4.060 8 C -0.117 4.117 9 H 0.110 0.890 10 C -0.013 4.013 11 N -0.365 5.365 12 C 0.342 3.658 13 O -0.390 6.390 14 C -0.296 4.296 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.020 4.020 25 C -0.120 4.120 26 H 0.102 0.898 27 C -0.201 4.201 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.171 0.829 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.502 -15.436 -17.805 28.768 hybrid contribution 0.493 2.336 -0.777 2.511 sum 16.995 -13.100 -18.583 28.386 Atomic orbital electron populations 1.21757 0.93609 1.02305 1.03408 1.22434 0.95716 0.83572 0.99896 1.87865 1.21044 1.26718 1.95424 1.22564 0.81584 0.96876 1.00489 1.21954 1.00468 0.92996 0.91317 1.60489 1.23315 1.13867 1.34565 1.22024 1.00670 0.87505 0.95769 1.22240 0.95244 0.95607 0.98631 0.88980 1.22321 0.93918 0.88145 0.96959 1.49011 1.33290 1.11491 1.42724 1.19977 0.78332 0.90376 0.77081 1.90709 1.42805 1.46166 1.59351 1.23496 1.06662 0.95438 1.04039 1.85408 1.35462 1.14862 1.47637 1.22816 1.20856 0.95413 1.29228 0.91007 1.24992 0.94564 0.98724 0.95313 1.70011 1.17193 1.35088 1.27992 0.86227 0.77942 0.82899 0.78445 1.19951 1.20813 1.19936 1.22433 0.87329 0.92969 0.99252 1.22109 0.95933 0.94384 0.99524 0.89772 1.21845 0.99305 1.01644 0.97305 0.91935 0.91125 0.91480 0.93686 0.93295 0.92263 0.93076 0.89720 0.94434 0.82866 0.90713 0.94889 0.91957 0.89766 0.89353 0.89396 0.92138 0.89875 0.91312 0.92422 0.92366 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.39 -3.62 9.86 -35.23 -0.35 -3.97 16 4 C 0.06 0.45 6.28 37.16 0.23 0.68 16 5 C 0.06 0.44 6.11 -3.83 -0.02 0.42 16 6 N -0.69 -5.98 6.50 -113.78 -0.74 -6.72 16 7 C 0.07 0.55 4.86 -3.82 -0.02 0.53 16 8 C -0.10 -0.93 2.95 -89.22 -0.26 -1.19 16 9 H 0.09 0.98 7.71 -51.93 -0.40 0.58 16 10 C 0.11 1.38 5.82 -2.31 -0.01 1.36 16 11 N -0.63 -9.46 3.32 -169.17 -0.56 -10.02 16 12 C 0.55 11.13 7.93 -10.99 -0.09 11.04 16 13 O -0.52 -12.43 16.13 5.56 0.09 -12.34 16 14 C -0.15 -3.08 5.13 36.00 0.18 -2.90 16 15 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 16 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 20 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.10 1.15 6.47 -2.41 -0.02 1.14 16 25 C -0.10 -0.88 3.30 -89.22 -0.29 -1.17 16 26 H 0.08 0.58 7.71 -51.93 -0.40 0.18 16 27 C -0.14 -1.30 8.91 37.16 0.33 -0.96 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.35 3.48 7.55 -39.29 -0.30 3.19 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.26 8.02 -51.93 -0.42 -0.16 16 40 H 0.06 0.73 7.78 -51.93 -0.40 0.32 16 41 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 42 H 0.09 1.73 7.95 -51.92 -0.41 1.32 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.08 0.93 7.03 -51.93 -0.36 0.57 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -34.66 410.05 -10.01 -44.67 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.99 Total: -0.58 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 0.86 Total: -4.18 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.57 Total: -42.45 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.26 Total: -16.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.66 -10.01 -44.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105849835.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.506 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds