Wall clock time and date at job start Tue Mar 31 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.29272 * 2 1 4 4 C 1.54009 * 110.32597 * 237.86541 * 2 1 3 5 5 N 1.47482 * 107.08876 * 242.31015 * 4 2 1 6 6 C 1.34774 * 127.03646 * 154.51109 * 5 4 2 7 7 O 1.21618 * 120.00457 * 186.73613 * 6 5 4 8 8 C 1.47320 * 119.99702 * 6.73823 * 6 5 4 9 9 C 1.39006 * 120.90678 * 9.60598 * 8 6 5 10 10 C 1.39712 * 119.28742 * 179.75678 * 9 8 6 11 11 C 1.35257 * 121.08568 * 0.55264 * 10 9 8 12 12 N 1.35720 * 121.56966 * 359.69694 * 11 10 9 13 13 N 1.40206 * 134.09326 * 180.02562 * 12 11 10 14 14 N 1.29018 * 106.96366 * 180.02562 * 13 12 11 15 15 N 1.28593 * 110.78643 * 359.97438 * 14 13 12 16 16 C 1.32051 * 110.20926 * 359.97438 * 15 14 13 17 17 C 1.48119 * 105.92974 * 334.78168 * 5 4 2 18 18 C 1.54592 * 103.42696 * 39.02064 * 17 5 4 19 19 H 1.09004 * 110.57807 * 81.17029 * 18 17 5 20 20 C 1.52997 * 110.99163 * 204.37365 * 18 17 5 21 21 N 1.46500 * 109.47270 * 288.65107 * 20 18 17 22 22 C 1.36936 * 119.99750 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00251 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99607 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99837 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00069 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47052 * 359.97438 * 26 24 22 28 28 H 1.48491 * 109.47335 * 119.99332 * 26 24 22 29 29 H 1.48497 * 109.46873 * 240.00129 * 26 24 22 30 30 H 1.09000 * 109.47334 * 180.68348 * 1 2 3 31 31 H 1.09005 * 109.46644 * 300.67920 * 1 2 3 32 32 H 1.09002 * 109.47166 * 60.67833 * 1 2 3 33 33 H 1.08999 * 109.91354 * 122.94465 * 4 2 1 34 34 H 1.09004 * 109.91099 * 1.67882 * 4 2 1 35 35 H 1.08006 * 120.35160 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.46103 * 180.29466 * 10 9 8 37 37 H 1.07998 * 119.21439 * 179.72403 * 11 10 9 38 38 H 1.09003 * 110.66236 * 157.50705 * 17 5 4 39 39 H 1.08999 * 110.66143 * 280.62112 * 17 5 4 40 40 H 1.09002 * 109.46928 * 48.65703 * 20 18 17 41 41 H 1.09001 * 109.47195 * 168.65347 * 20 18 17 42 42 H 0.96993 * 119.99857 * 0.02562 * 21 20 18 43 43 H 0.97001 * 119.99948 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8298 -1.9203 -0.7104 6 6 3.0644 -3.0860 -1.3450 7 8 3.6089 -4.0002 -0.7561 8 6 2.6613 -3.2527 -2.7521 9 6 2.2213 -2.1681 -3.5021 10 6 1.8522 -2.3638 -4.8353 11 6 1.9057 -3.5908 -5.4019 12 7 2.3241 -4.6777 -4.7049 13 7 2.4813 -6.0355 -5.0169 14 7 2.9185 -6.6182 -3.9520 15 7 3.0570 -5.7726 -2.9932 16 6 2.7081 -4.5645 -3.3964 17 6 3.2816 -1.5369 0.6470 18 6 2.0694 -0.7721 1.2262 19 1 1.3210 -1.4693 1.6031 20 6 2.5073 0.1965 2.3267 21 7 2.9003 -0.5620 3.5168 22 6 3.3319 0.0970 4.6369 23 1 3.3823 1.1758 4.6431 24 6 3.7048 -0.6218 5.7645 25 7 3.6429 -1.9365 5.7571 26 14 4.2930 0.2770 7.2928 27 1 4.2698 1.7412 7.0456 28 1 3.3985 -0.0472 8.4328 29 1 5.6790 -0.1482 7.6144 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5244 0.8839 32 1 -0.3633 0.5033 -0.8960 33 1 2.7165 -0.1221 -1.8113 34 1 1.2332 -1.1172 -1.8350 35 1 2.1689 -1.1841 -3.0599 36 1 1.5145 -1.5222 -5.4220 37 1 1.6090 -3.7084 -6.4336 38 1 3.4981 -2.4224 1.2448 39 1 4.1541 -0.8858 0.5924 40 1 3.3540 0.7863 1.9756 41 1 1.6801 0.8610 2.5761 42 1 2.8554 -1.5309 3.5112 43 1 3.9031 -2.4387 6.5452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106178130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:45 Heat of formation + Delta-G solvation = 154.365525 kcal Electronic energy + Delta-G solvation = -27752.899027 eV Core-core repulsion = 23837.773455 eV Total energy + Delta-G solvation = -3915.125572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.68615 -40.56070 -38.87506 -37.94258 -34.93718 -34.28050 -32.97256 -32.38861 -31.55574 -31.01118 -29.09969 -27.11236 -26.05502 -25.15619 -24.65555 -23.61918 -22.97733 -21.43692 -20.17081 -20.08410 -19.24505 -18.05104 -17.25716 -17.20911 -16.83762 -16.35692 -15.96204 -15.69807 -14.84436 -14.46896 -14.31589 -14.08230 -13.87726 -13.57358 -13.43781 -13.26873 -13.13236 -12.97950 -12.85541 -12.80537 -12.45713 -12.03274 -11.98265 -11.69361 -11.37422 -11.24887 -11.13621 -10.88999 -10.67170 -10.63610 -10.52770 -10.43607 -10.07629 -9.99141 -9.68965 -9.09873 -8.90070 -8.76069 -6.93967 -5.75943 -3.05989 -0.47229 0.06585 1.22051 1.79886 2.15243 2.60334 3.04796 3.16259 3.43857 3.48634 3.50668 3.51754 3.85797 3.92747 4.18074 4.33380 4.52850 4.58008 4.67508 4.71377 4.82613 4.92929 5.01960 5.10809 5.11789 5.15630 5.36782 5.40880 5.41720 5.55367 5.64384 5.67514 5.84026 5.85733 5.94802 6.05222 6.09153 6.10565 6.34622 6.36776 6.65557 6.77521 7.34894 7.69564 7.97919 8.06268 8.41806 9.53229 10.09858 10.43684 11.46488 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002636 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.984009 B =10620.376287 C =11739.700813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.087 3.913 5 N -0.614 5.614 6 C 0.575 3.425 7 O -0.495 6.495 8 C -0.089 4.089 9 C -0.048 4.048 10 C -0.144 4.144 11 C 0.125 3.875 12 N -0.310 5.310 13 N -0.108 5.108 14 N -0.007 5.007 15 N -0.288 5.288 16 C 0.273 3.727 17 C 0.116 3.884 18 C -0.103 4.103 19 H 0.086 0.914 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.184 0.816 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 5.988 -27.327 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.036 4.036 5 N -0.348 5.348 6 C 0.361 3.639 7 O -0.369 6.369 8 C -0.098 4.098 9 C -0.073 4.073 10 C -0.168 4.168 11 C -0.002 4.002 12 N -0.090 5.090 13 N -0.091 5.091 14 N 0.000 5.000 15 N -0.144 5.144 16 C 0.014 3.986 17 C -0.004 4.004 18 C -0.123 4.123 19 H 0.104 0.896 20 C 0.038 3.962 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.201 0.799 36 H 0.192 0.808 37 H 0.201 0.799 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.324 3.824 -27.100 28.332 hybrid contribution 0.060 1.038 0.612 1.206 sum -7.264 4.862 -26.488 27.893 Atomic orbital electron populations 1.21854 0.93971 1.02111 1.02127 1.22126 0.96478 0.99841 0.93529 0.89034 1.22733 0.95370 0.87825 0.97662 1.48639 1.53415 1.14012 1.18763 1.16982 0.80642 0.81802 0.84450 1.90968 1.41455 1.38266 1.66163 1.20291 1.05754 0.87811 0.95949 1.23061 0.90272 1.00577 0.93389 1.21076 1.03283 0.96465 0.95931 1.21810 0.95863 0.83398 0.99132 1.49019 1.40455 1.09184 1.10367 1.82810 1.25545 0.81940 1.18796 1.78077 1.05859 1.22513 0.93589 1.75347 1.22771 0.95706 1.20599 1.23620 0.96225 0.95786 0.82987 1.22608 0.96975 1.00500 0.80362 1.22540 0.97104 0.97924 0.94689 0.89604 1.20614 0.96610 0.92657 0.86346 1.42384 1.79268 1.05984 1.10147 1.19226 1.36161 0.91232 0.90780 0.91134 1.24762 1.02286 0.95481 0.98324 1.69669 1.54121 1.04529 1.29426 0.86137 0.78135 0.78578 0.83434 1.20585 1.21876 1.21845 0.92567 0.91599 0.92664 0.90587 0.90031 0.79922 0.80762 0.79900 0.88761 0.90173 0.96067 0.95858 0.78141 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.90 37.16 0.33 -0.83 16 2 C -0.10 -0.91 3.17 -89.24 -0.28 -1.20 16 3 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 4 C 0.09 0.64 4.65 -2.98 -0.01 0.63 16 5 N -0.61 -7.48 3.29 -171.28 -0.56 -8.05 16 6 C 0.57 8.33 7.81 -12.57 -0.10 8.23 16 7 O -0.49 -9.72 16.53 5.26 0.09 -9.63 16 8 C -0.09 -0.98 6.04 -102.71 -0.62 -1.60 16 9 C -0.05 -0.26 8.46 -38.75 -0.33 -0.59 16 10 C -0.14 -0.38 9.92 -40.09 -0.40 -0.77 16 11 C 0.13 0.60 11.15 -16.89 -0.19 0.41 16 12 N -0.31 -3.26 3.94 -10.99 -0.04 -3.30 16 13 N -0.11 -1.42 13.99 60.35 0.84 -0.58 16 14 N -0.01 -0.12 13.36 60.35 0.81 0.69 16 15 N -0.29 -4.89 11.79 32.20 0.38 -4.51 16 16 C 0.27 3.67 7.84 -154.52 -1.21 2.46 16 17 C 0.12 1.73 6.47 -2.32 -0.01 1.71 16 18 C -0.10 -1.44 2.60 -88.93 -0.23 -1.68 16 19 H 0.09 1.35 7.86 -51.93 -0.41 0.94 16 20 C 0.17 2.97 5.58 -4.04 -0.02 2.95 16 21 N -0.73 -17.81 5.52 -59.91 -0.33 -18.14 16 22 C -0.24 -6.63 9.99 -15.06 -0.15 -6.79 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 26 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.36 7.42 -51.93 -0.39 -0.03 16 34 H 0.08 0.42 5.56 -51.93 -0.29 0.13 16 35 H 0.18 0.53 3.61 -52.48 -0.19 0.34 16 36 H 0.18 -0.33 8.06 -52.48 -0.42 -0.75 16 37 H 0.18 0.17 8.06 -52.49 -0.42 -0.25 16 38 H 0.09 1.73 7.81 -51.93 -0.41 1.32 16 39 H 0.08 1.16 7.94 -51.93 -0.41 0.75 16 40 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 10.03 7.67 -40.82 -0.31 9.72 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -38.12 358.99 -6.34 -44.46 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.31 Total: 1.38 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -3.33 Total: 2.51 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 1.82 Total: -61.36 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.12 -6.34 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106178130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.826 kcal (2) G-P(sol) polarization free energy of solvation -38.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds