Wall clock time and date at job start Tue Mar 31 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.29272 * 2 1 4 4 C 1.54009 * 110.32597 * 237.86541 * 2 1 3 5 5 N 1.47482 * 107.08876 * 242.31015 * 4 2 1 6 6 C 1.34774 * 127.03646 * 154.51109 * 5 4 2 7 7 O 1.21618 * 120.00457 * 186.73613 * 6 5 4 8 8 C 1.47320 * 119.99702 * 6.73823 * 6 5 4 9 9 C 1.39006 * 120.90678 * 9.60598 * 8 6 5 10 10 C 1.39712 * 119.28742 * 179.75678 * 9 8 6 11 11 C 1.35257 * 121.08568 * 0.55264 * 10 9 8 12 12 N 1.35720 * 121.56966 * 359.69694 * 11 10 9 13 13 N 1.40206 * 134.09326 * 180.02562 * 12 11 10 14 14 N 1.29018 * 106.96366 * 180.02562 * 13 12 11 15 15 N 1.28593 * 110.78643 * 359.97438 * 14 13 12 16 16 C 1.32051 * 110.20926 * 359.97438 * 15 14 13 17 17 C 1.48119 * 105.92974 * 334.78168 * 5 4 2 18 18 C 1.54592 * 103.42696 * 39.02064 * 17 5 4 19 19 H 1.09004 * 110.57807 * 81.17029 * 18 17 5 20 20 C 1.52997 * 110.99163 * 204.37365 * 18 17 5 21 21 N 1.46500 * 109.47270 * 288.65107 * 20 18 17 22 22 C 1.36936 * 119.99750 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00251 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99607 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99837 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00069 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47052 * 359.97438 * 26 24 22 28 28 H 1.48491 * 109.47335 * 119.99332 * 26 24 22 29 29 H 1.48497 * 109.46873 * 240.00129 * 26 24 22 30 30 H 1.09000 * 109.47334 * 180.68348 * 1 2 3 31 31 H 1.09005 * 109.46644 * 300.67920 * 1 2 3 32 32 H 1.09002 * 109.47166 * 60.67833 * 1 2 3 33 33 H 1.08999 * 109.91354 * 122.94465 * 4 2 1 34 34 H 1.09004 * 109.91099 * 1.67882 * 4 2 1 35 35 H 1.08006 * 120.35160 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.46103 * 180.29466 * 10 9 8 37 37 H 1.07998 * 119.21439 * 179.72403 * 11 10 9 38 38 H 1.09003 * 110.66236 * 157.50705 * 17 5 4 39 39 H 1.08999 * 110.66143 * 280.62112 * 17 5 4 40 40 H 1.09002 * 109.46928 * 48.65703 * 20 18 17 41 41 H 1.09001 * 109.47195 * 168.65347 * 20 18 17 42 42 H 0.96993 * 119.99857 * 0.02562 * 21 20 18 43 43 H 0.97001 * 119.99948 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8298 -1.9203 -0.7104 6 6 3.0644 -3.0860 -1.3450 7 8 3.6089 -4.0002 -0.7561 8 6 2.6613 -3.2527 -2.7521 9 6 2.2213 -2.1681 -3.5021 10 6 1.8522 -2.3638 -4.8353 11 6 1.9057 -3.5908 -5.4019 12 7 2.3241 -4.6777 -4.7049 13 7 2.4813 -6.0355 -5.0169 14 7 2.9185 -6.6182 -3.9520 15 7 3.0570 -5.7726 -2.9932 16 6 2.7081 -4.5645 -3.3964 17 6 3.2816 -1.5369 0.6470 18 6 2.0694 -0.7721 1.2262 19 1 1.3210 -1.4693 1.6031 20 6 2.5073 0.1965 2.3267 21 7 2.9003 -0.5620 3.5168 22 6 3.3319 0.0970 4.6369 23 1 3.3823 1.1758 4.6431 24 6 3.7048 -0.6218 5.7645 25 7 3.6429 -1.9365 5.7571 26 14 4.2930 0.2770 7.2928 27 1 4.2698 1.7412 7.0456 28 1 3.3985 -0.0472 8.4328 29 1 5.6790 -0.1482 7.6144 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5244 0.8839 32 1 -0.3633 0.5033 -0.8960 33 1 2.7165 -0.1221 -1.8113 34 1 1.2332 -1.1172 -1.8350 35 1 2.1689 -1.1841 -3.0599 36 1 1.5145 -1.5222 -5.4220 37 1 1.6090 -3.7084 -6.4336 38 1 3.4981 -2.4224 1.2448 39 1 4.1541 -0.8858 0.5924 40 1 3.3540 0.7863 1.9756 41 1 1.6801 0.8610 2.5761 42 1 2.8554 -1.5309 3.5112 43 1 3.9031 -2.4387 6.5452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106178130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:45 Heat of formation + Delta-G solvation = 124.139867 kcal Electronic energy + Delta-G solvation = -27754.209710 eV Core-core repulsion = 23837.773455 eV Total energy + Delta-G solvation = -3916.436255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.52977 -41.51094 -39.61000 -39.01555 -36.51161 -35.26770 -34.13859 -33.14587 -33.03095 -31.91832 -30.47728 -27.89085 -27.27271 -26.16572 -25.35926 -25.05947 -24.12711 -22.60486 -21.17319 -21.01105 -20.06079 -19.10626 -18.71835 -18.10481 -17.86254 -17.07391 -16.84455 -16.65823 -16.47942 -15.78497 -15.33915 -15.23394 -14.83486 -14.80820 -14.50649 -14.27247 -14.15641 -13.87755 -13.74711 -13.68594 -13.50962 -13.28610 -12.93721 -12.77725 -12.73095 -12.56961 -12.38631 -12.18916 -12.03850 -11.92108 -11.67898 -11.51668 -11.37970 -11.27406 -11.11603 -10.92994 -9.91563 -9.66691 -8.98067 -7.93304 -5.22627 -1.08706 -0.61884 0.55050 0.92187 1.42261 1.47459 1.48855 1.58783 1.68328 2.20287 2.45537 2.57056 2.77137 3.22786 3.40893 3.47203 3.53197 3.64764 3.74616 3.85801 3.98030 4.13583 4.23345 4.25071 4.32665 4.39680 4.52779 4.53926 4.58705 4.67326 4.75001 4.83614 4.86802 4.92795 4.96161 5.08851 5.13090 5.27470 5.31993 5.36098 5.42990 5.51930 5.61064 6.28203 6.40184 6.97490 7.13892 7.33937 8.11953 8.31795 9.30648 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002636 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.984009 B =10620.376287 C =11739.700813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.116 0.884 4 C 0.078 3.922 5 N -0.609 5.609 6 C 0.568 3.432 7 O -0.573 6.573 8 C -0.133 4.133 9 C 0.001 3.999 10 C -0.111 4.111 11 C 0.118 3.882 12 N -0.304 5.304 13 N -0.119 5.119 14 N -0.040 5.040 15 N -0.353 5.353 16 C 0.252 3.748 17 C 0.118 3.882 18 C -0.096 4.096 19 H 0.059 0.941 20 C 0.164 3.836 21 N -0.751 5.751 22 C -0.238 4.238 23 H 0.083 0.917 24 C -0.083 4.083 25 N -0.974 5.974 26 Si 0.973 3.027 27 H -0.259 1.259 28 H -0.296 1.296 29 H -0.298 1.298 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.220 0.780 36 H 0.246 0.754 37 H 0.230 0.770 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.369 0.631 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 11.530 -31.729 35.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.134 0.866 4 C -0.042 4.042 5 N -0.341 5.341 6 C 0.357 3.643 7 O -0.452 6.452 8 C -0.143 4.143 9 C -0.023 4.023 10 C -0.133 4.133 11 C -0.007 4.007 12 N -0.085 5.085 13 N -0.102 5.102 14 N -0.033 5.033 15 N -0.211 5.211 16 C -0.005 4.005 17 C -0.004 4.004 18 C -0.116 4.116 19 H 0.077 0.923 20 C 0.038 3.962 21 N -0.393 5.393 22 C -0.370 4.370 23 H 0.101 0.899 24 C -0.275 4.275 25 N -0.625 5.625 26 Si 0.803 3.197 27 H -0.183 1.183 28 H -0.223 1.223 29 H -0.225 1.225 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.236 0.764 36 H 0.262 0.738 37 H 0.246 0.754 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.200 0.800 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.415 9.472 -31.569 34.277 hybrid contribution 0.579 -0.428 1.794 1.933 sum -8.835 9.045 -29.774 32.348 Atomic orbital electron populations 1.21871 0.92845 1.01684 1.03523 1.22150 0.97323 1.00325 0.90997 0.86629 1.23250 0.96911 0.86403 0.97594 1.48623 1.53207 1.14847 1.17469 1.17636 0.79496 0.81198 0.85933 1.90922 1.45124 1.40907 1.68241 1.19993 1.11059 0.88658 0.94577 1.23646 0.85068 0.99712 0.93890 1.21961 0.99654 0.97160 0.94511 1.23115 0.94143 0.82452 1.01001 1.49155 1.40177 1.09362 1.09770 1.82572 1.25792 0.83591 1.18266 1.77986 1.07479 1.23637 0.94197 1.75161 1.25641 0.97945 1.22373 1.23781 0.96711 0.95646 0.84343 1.22341 0.97821 0.98364 0.81883 1.22361 0.96092 0.97284 0.95876 0.92257 1.20836 0.97005 0.93105 0.85264 1.42705 1.79282 1.05694 1.11653 1.19713 1.33942 0.91876 0.91443 0.89904 1.25636 1.03850 0.96198 1.01769 1.69857 1.56460 1.06294 1.29919 0.85062 0.76785 0.78462 0.79408 1.18308 1.22341 1.22525 0.93884 0.93120 0.88452 0.85648 0.86566 0.76387 0.73803 0.75390 0.94224 0.89734 0.94778 0.94919 0.79960 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.90 71.98 0.64 -1.05 16 2 C -0.09 -1.25 3.17 -9.90 -0.03 -1.28 16 3 H 0.12 1.19 7.85 -2.39 -0.02 1.17 16 4 C 0.08 0.74 4.65 86.53 0.40 1.14 16 5 N -0.61 -14.38 3.29 -814.06 -2.68 -17.06 16 6 C 0.57 17.17 7.81 86.63 0.68 17.85 16 7 O -0.57 -25.25 16.53 -4.09 -0.07 -25.32 16 8 C -0.13 -2.74 6.04 -18.63 -0.11 -2.86 16 9 C 0.00 0.00 8.46 22.81 0.19 0.20 16 10 C -0.11 0.34 9.92 21.94 0.22 0.56 16 11 C 0.12 0.47 11.15 83.40 0.93 1.40 16 12 N -0.30 -5.95 3.94 -188.68 -0.74 -6.69 16 13 N -0.12 -3.22 13.99 37.02 0.52 -2.70 16 14 N -0.04 -1.40 13.36 37.02 0.49 -0.90 16 15 N -0.35 -13.24 11.79 -52.05 -0.61 -13.86 16 16 C 0.25 6.97 7.84 135.76 1.06 8.04 16 17 C 0.12 3.69 6.47 86.61 0.56 4.25 16 18 C -0.10 -2.69 2.60 -9.70 -0.03 -2.72 16 19 H 0.06 1.97 7.86 -2.38 -0.02 1.95 16 20 C 0.16 5.81 5.58 86.38 0.48 6.29 16 21 N -0.75 -37.68 5.52 -343.45 -1.90 -39.58 16 22 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 23 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 24 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 25 N -0.97 -62.00 13.06 21.65 0.28 -61.71 16 26 Si 0.97 46.68 29.55 68.60 2.03 48.70 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.13 0.12 7.42 -2.39 -0.02 0.10 16 34 H 0.12 0.33 5.56 -2.38 -0.01 0.32 16 35 H 0.22 -0.69 3.61 -2.91 -0.01 -0.70 16 36 H 0.25 -3.89 8.06 -2.91 -0.02 -3.92 16 37 H 0.23 -1.21 8.06 -2.91 -0.02 -1.23 16 38 H 0.04 1.65 7.81 -2.39 -0.02 1.63 16 39 H 0.08 2.51 7.94 -2.39 -0.02 2.49 16 40 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.37 20.60 7.67 -92.71 -0.71 19.88 16 43 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -101.31 358.99 3.98 -97.33 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.36 Total: 6.64 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.31 Total: 15.16 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -4.64 Total: -142.51 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.07 Total: -25.32 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -101.31 3.98 -97.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106178130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.469 kcal (2) G-P(sol) polarization free energy of solvation -101.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds