Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.30617 * 2 1 4 4 C 1.54393 * 110.34178 * 237.71032 * 2 1 3 5 5 N 1.48141 * 104.61920 * 264.99977 * 4 2 1 6 6 C 1.34778 * 127.84190 * 140.40601 * 5 4 2 7 7 O 1.21516 * 119.99606 * 354.48161 * 6 5 4 8 8 C 1.48114 * 119.99943 * 174.47776 * 6 5 4 9 9 C 1.39828 * 119.37110 * 184.59143 * 8 6 5 10 10 C 1.36967 * 119.60451 * 179.70258 * 9 8 6 11 11 C 1.39818 * 118.25556 * 0.57813 * 10 9 8 12 12 N 1.34651 * 135.00510 * 179.71893 * 11 10 9 13 13 N 1.28675 * 109.15358 * 179.97438 * 12 11 10 14 14 N 1.28762 * 111.85064 * 0.02562 * 13 12 11 15 15 H 0.97000 * 125.86060 * 179.97438 * 14 13 12 16 16 C 1.37247 * 108.28360 * 359.97438 * 14 13 12 17 17 N 1.31952 * 134.70958 * 180.02562 * 16 14 13 18 18 C 1.48320 * 104.39296 * 320.47208 * 5 4 2 19 19 C 1.54279 * 110.34139 * 122.17548 * 2 1 3 20 20 H 1.09003 * 110.34661 * 359.89581 * 19 2 1 21 21 C 1.53002 * 110.34446 * 237.73978 * 19 2 1 22 22 N 1.46504 * 109.47242 * 176.47591 * 21 19 2 23 23 C 1.36938 * 119.99742 * 180.27464 * 22 21 19 24 24 H 1.08001 * 119.99913 * 359.72249 * 23 22 21 25 25 C 1.38805 * 119.99686 * 179.72333 * 23 22 21 26 26 N 1.31616 * 120.00392 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99702 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47434 * 59.99749 * 27 25 23 29 29 H 1.48506 * 109.47100 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47213 * 299.99613 * 27 25 23 31 31 H 1.08998 * 109.47271 * 297.82691 * 1 2 3 32 32 H 1.09001 * 109.47244 * 57.82441 * 1 2 3 33 33 H 1.08998 * 109.47191 * 177.82391 * 1 2 3 34 34 H 1.09005 * 110.40599 * 23.78286 * 4 2 1 35 35 H 1.08994 * 110.40715 * 146.09238 * 4 2 1 36 36 H 1.07995 * 120.19420 * 359.97438 * 9 8 6 37 37 H 1.07997 * 120.87585 * 180.26382 * 10 9 8 38 38 H 1.09001 * 110.38446 * 280.74055 * 18 5 4 39 39 H 1.08998 * 110.51218 * 158.24899 * 18 5 4 40 40 H 1.08996 * 109.46879 * 56.47209 * 21 19 2 41 41 H 1.09003 * 109.46816 * 296.47420 * 21 19 2 42 42 H 0.96999 * 119.99956 * 0.02562 * 22 21 19 43 43 H 0.97006 * 120.00402 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2238 5 7 2.3138 -2.1446 -0.7206 6 6 2.0771 -3.3119 -1.3513 7 8 1.5129 -3.3175 -2.4275 8 6 2.5046 -4.5879 -0.7325 9 6 2.3400 -5.7825 -1.4405 10 6 2.7393 -6.9645 -0.8753 11 6 3.2917 -6.9309 0.4086 12 7 3.7767 -7.8537 1.2610 13 7 4.1707 -7.2686 2.3372 14 7 3.9884 -5.9950 2.2845 15 1 4.2117 -5.3597 2.9827 16 6 3.4241 -5.6906 1.0710 17 7 3.0304 -4.5766 0.4836 18 6 2.8795 -1.9433 0.6356 19 6 2.0663 -0.7703 1.2244 20 1 1.2398 -1.1472 1.8269 21 6 2.9692 0.1326 2.0673 22 7 3.3995 -0.5899 3.2669 23 6 4.2152 0.0235 4.1799 24 1 4.5449 1.0384 4.0134 25 6 4.6182 -0.6591 5.3193 26 7 4.2161 -1.8957 5.5225 27 14 5.7303 0.1780 6.5651 28 1 5.0569 1.3915 7.0933 29 1 6.0138 -0.7577 7.6830 30 1 7.0052 0.5652 5.9092 31 1 -0.3634 0.4797 0.9088 32 1 -0.3634 0.5472 -0.8698 33 1 -0.3633 -1.0269 -0.0390 34 1 1.3222 -0.7890 -2.0199 35 1 2.9938 -0.3245 -1.5803 36 1 1.9046 -5.7725 -2.4287 37 1 2.6256 -7.8985 -1.4054 38 1 3.9351 -1.6793 0.5713 39 1 2.7471 -2.8395 1.2416 40 1 2.4181 1.0264 2.3595 41 1 3.8434 0.4197 1.4828 42 1 3.1037 -1.5016 3.4162 43 1 4.4975 -2.3727 6.3190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106216285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = 117.208986 kcal Electronic energy + Delta-G solvation = -28342.332376 eV Core-core repulsion = 24425.595576 eV Total energy + Delta-G solvation = -3916.736801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.54945 -40.53214 -38.98759 -37.76636 -34.71025 -34.46284 -32.98551 -31.95951 -31.50352 -31.03698 -29.01831 -27.13376 -25.77148 -25.16260 -24.01893 -23.30392 -22.78404 -21.37280 -20.34051 -19.69043 -18.95029 -18.59371 -17.57212 -17.03696 -16.77856 -16.00131 -15.82834 -15.51127 -14.78509 -14.36259 -14.31133 -14.09097 -13.73924 -13.51376 -13.27030 -13.19312 -13.01080 -12.92266 -12.53263 -12.39125 -12.17734 -11.88020 -11.86179 -11.67933 -11.27666 -11.21168 -10.90360 -10.69430 -10.62370 -10.41679 -10.30872 -10.09721 -9.73906 -9.51307 -9.43921 -9.29360 -8.95011 -8.67127 -7.01179 -5.86645 -3.14171 -0.11354 0.71126 1.90257 1.99706 2.57654 2.78626 3.38003 3.43274 3.43431 3.46868 3.51321 3.94042 4.11729 4.37028 4.49837 4.51892 4.72013 4.77829 4.94148 5.06817 5.13306 5.34526 5.44896 5.48104 5.50647 5.55877 5.57396 5.65775 5.74369 5.83794 5.95671 5.96665 6.07636 6.13084 6.21249 6.23195 6.40200 6.43898 6.54429 6.68577 6.80994 7.13692 7.47030 7.61746 7.92918 7.98166 8.33087 9.44928 10.01470 10.36642 11.36508 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.008756 B = 0.004675 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.015948 B = 5988.340740 C = 8897.487634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.108 3.892 5 N -0.598 5.598 6 C 0.591 3.409 7 O -0.536 6.536 8 C 0.149 3.851 9 C -0.124 4.124 10 C -0.004 4.004 11 C -0.024 4.024 12 N -0.248 5.248 13 N 0.016 4.984 14 N -0.390 5.390 15 H 0.469 0.531 16 C 0.216 3.784 17 N -0.427 5.427 18 C 0.100 3.900 19 C -0.106 4.106 20 H 0.081 0.919 21 C 0.163 3.837 22 N -0.732 5.732 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.937 5.937 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 -5.392 -14.507 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.014 4.014 5 N -0.329 5.329 6 C 0.377 3.623 7 O -0.413 6.413 8 C -0.006 4.006 9 C -0.147 4.147 10 C -0.035 4.035 11 C -0.152 4.152 12 N -0.124 5.124 13 N 0.032 4.968 14 N -0.123 5.123 15 H 0.319 0.681 16 C -0.028 4.028 17 N -0.143 5.143 18 C -0.021 4.021 19 C -0.125 4.125 20 H 0.099 0.901 21 C 0.035 3.965 22 N -0.376 5.376 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.586 5.586 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.182 0.818 37 H 0.176 0.824 38 H 0.094 0.906 39 H 0.133 0.867 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.216 0.784 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.618 -5.826 -13.719 15.604 hybrid contribution 0.368 0.781 0.555 1.027 sum -4.251 -5.045 -13.164 14.724 Atomic orbital electron populations 1.21821 0.94447 1.01779 1.01712 1.22127 0.96257 0.99699 0.94048 0.89221 1.22494 1.01052 0.80674 0.97153 1.48892 1.60600 1.04872 1.18527 1.17218 0.79373 0.81601 0.84090 1.90793 1.42841 1.86231 1.21388 1.21152 0.95850 0.94664 0.88940 1.21666 1.00122 0.90610 1.02339 1.20470 0.92998 0.99641 0.90374 1.20725 1.05283 0.91164 0.98021 1.75430 1.14458 1.24934 0.97556 1.78135 1.12596 0.88876 1.17143 1.44919 1.45221 1.07794 1.14323 0.68081 1.19920 1.01646 0.91990 0.89289 1.66623 1.10505 1.27391 1.09784 1.23081 0.97320 1.00501 0.81242 1.22441 0.98848 0.95655 0.95594 0.90079 1.20734 0.94294 0.93423 0.88066 1.42338 1.58890 1.15284 1.21062 1.19191 1.21168 0.97218 0.99273 0.91247 1.24679 1.01160 0.96390 0.98552 1.69622 1.49601 1.10593 1.28736 0.86286 0.80574 0.78356 0.81074 1.21272 1.21693 1.21309 0.92165 0.92746 0.92820 0.89811 0.90733 0.81777 0.82377 0.90591 0.86671 0.95945 0.96055 0.78371 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.90 37.16 0.33 -1.21 16 2 C -0.10 -1.21 3.31 -89.22 -0.30 -1.50 16 3 H 0.09 0.99 7.71 -51.93 -0.40 0.59 16 4 C 0.11 1.29 6.62 -2.41 -0.02 1.27 16 5 N -0.60 -8.21 3.32 -170.17 -0.56 -8.78 16 6 C 0.59 8.39 7.89 -12.21 -0.10 8.30 16 7 O -0.54 -8.36 16.55 5.35 0.09 -8.27 16 8 C 0.15 1.94 6.73 -82.93 -0.56 1.38 16 9 C -0.12 -1.27 9.55 -39.45 -0.38 -1.65 16 10 C 0.00 -0.04 10.16 -39.45 -0.40 -0.44 16 11 C -0.02 -0.31 7.38 -84.90 -0.63 -0.93 16 12 N -0.25 -3.46 12.43 32.12 0.40 -3.06 16 13 N 0.02 0.22 13.28 60.35 0.80 1.02 16 14 N -0.39 -5.16 7.06 31.13 0.22 -4.94 16 15 H 0.47 5.67 8.96 -190.26 -1.71 3.96 16 16 C 0.22 2.99 8.56 -156.29 -1.34 1.65 16 17 N -0.43 -5.99 6.65 -8.90 -0.06 -6.05 16 18 C 0.10 1.49 5.72 -2.31 -0.01 1.48 16 19 C -0.11 -1.57 2.76 -89.22 -0.25 -1.81 16 20 H 0.08 1.29 7.71 -51.93 -0.40 0.89 16 21 C 0.16 2.97 5.37 -4.04 -0.02 2.95 16 22 N -0.73 -17.07 5.46 -59.91 -0.33 -17.40 16 23 C -0.24 -6.27 9.99 -15.06 -0.15 -6.42 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.94 -26.36 13.06 55.49 0.72 -25.63 16 27 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.97 7.56 -51.93 -0.39 0.58 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.16 1.37 7.61 -52.49 -0.40 0.97 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.08 1.22 7.78 -51.93 -0.40 0.81 16 39 H 0.12 1.84 5.33 -51.93 -0.28 1.56 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.40 8.02 -51.93 -0.42 -0.02 16 42 H 0.38 9.32 7.56 -40.82 -0.31 9.01 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -30.86 360.27 -9.00 -39.86 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.79 Total: 8.66 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.90 Total: 2.64 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: 1.19 Total: -64.83 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.86 -9.00 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106216285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.067 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds