Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.28952 * 2 1 4 4 C 1.54002 * 110.33073 * 237.86808 * 2 1 3 5 5 N 1.47487 * 107.08165 * 242.31070 * 4 2 1 6 6 C 1.34776 * 127.02900 * 154.51592 * 5 4 2 7 7 O 1.21550 * 119.99484 * 175.20402 * 6 5 4 8 8 C 1.47874 * 120.00516 * 355.47201 * 6 5 4 9 9 C 1.39462 * 121.10930 * 35.68441 * 8 6 5 10 10 C 1.38622 * 119.37066 * 180.02562 * 9 8 6 11 11 N 1.31581 * 121.63970 * 0.02562 * 10 9 8 12 12 C 1.32205 * 121.86654 * 359.97438 * 11 10 9 13 13 N 1.37212 * 134.67837 * 179.97438 * 12 11 10 14 14 H 0.97006 * 125.86675 * 0.04994 * 13 12 11 15 15 N 1.28779 * 108.26723 * 180.02562 * 13 12 11 16 16 N 1.28694 * 111.75506 * 0.02562 * 15 13 12 17 17 C 1.34394 * 109.15308 * 359.72770 * 16 15 13 18 18 C 1.48110 * 105.93500 * 334.77488 * 5 4 2 19 19 C 1.54602 * 103.42202 * 39.02552 * 18 5 4 20 20 H 1.09000 * 110.57436 * 81.16968 * 19 18 5 21 21 C 1.53002 * 110.98722 * 204.37618 * 19 18 5 22 22 N 1.46504 * 109.47140 * 288.64756 * 21 19 18 23 23 C 1.36934 * 119.99879 * 179.97438 * 22 21 19 24 24 H 1.07996 * 120.00459 * 0.02562 * 23 22 21 25 25 C 1.38816 * 119.99573 * 180.02562 * 23 22 21 26 26 N 1.31615 * 120.00227 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99919 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.46735 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47302 * 119.99541 * 27 25 23 30 30 H 1.48501 * 109.47102 * 240.00221 * 27 25 23 31 31 H 1.09001 * 109.46910 * 180.68132 * 1 2 3 32 32 H 1.09005 * 109.47053 * 300.67631 * 1 2 3 33 33 H 1.08997 * 109.47024 * 60.68181 * 1 2 3 34 34 H 1.08992 * 109.91687 * 122.94550 * 4 2 1 35 35 H 1.09005 * 109.91052 * 1.66571 * 4 2 1 36 36 H 1.08000 * 120.31299 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.17781 * 179.97438 * 10 9 8 38 38 H 1.08999 * 110.66344 * 157.50570 * 18 5 4 39 39 H 1.08997 * 110.66275 * 280.62755 * 18 5 4 40 40 H 1.09001 * 109.47533 * 48.65102 * 21 19 18 41 41 H 1.09001 * 109.46683 * 168.65182 * 21 19 18 42 42 H 0.97003 * 119.99784 * 0.02562 * 22 21 19 43 43 H 0.97004 * 119.99970 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7681 -1.2229 5 7 2.8299 -1.9202 -0.7102 6 6 3.0647 -3.0858 -1.3448 7 8 3.7878 -3.9198 -0.8360 8 6 2.4473 -3.3476 -2.6628 9 6 2.2706 -2.3227 -3.5920 10 6 1.6873 -2.6085 -4.8167 11 7 1.2941 -3.8253 -5.1267 12 6 1.4341 -4.8387 -4.2894 13 7 1.1283 -6.1756 -4.3330 14 1 0.7120 -6.6394 -5.0763 15 7 1.4895 -6.7089 -3.2179 16 7 2.0140 -5.8433 -2.4230 17 6 2.0222 -4.6411 -3.0236 18 6 3.2817 -1.5368 0.6472 19 6 2.0693 -0.7720 1.2263 20 1 1.3210 -1.4692 1.6031 21 6 2.5072 0.1967 2.3267 22 7 2.9002 -0.5617 3.5170 23 6 3.3318 0.0973 4.6370 24 1 3.3822 1.1760 4.6432 25 6 3.7046 -0.6214 5.7646 26 7 3.6427 -1.9361 5.7574 27 14 4.2928 0.2775 7.2929 28 1 4.2696 1.7416 7.0456 29 1 3.3982 -0.0467 8.4330 30 1 5.6788 -0.1477 7.6146 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3633 0.5243 0.8839 33 1 -0.3633 0.5032 -0.8960 34 1 2.7167 -0.1220 -1.8111 35 1 1.2334 -1.1173 -1.8349 36 1 2.5851 -1.3160 -3.3597 37 1 1.5515 -1.8124 -5.5338 38 1 3.4981 -2.4222 1.2450 39 1 4.1541 -0.8856 0.5925 40 1 3.3540 0.7866 1.9758 41 1 1.6799 0.8612 2.5760 42 1 2.8552 -1.5307 3.5114 43 1 3.9029 -2.4382 6.5455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106407757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = 86.944060 kcal Electronic energy + Delta-G solvation = -27792.255036 eV Core-core repulsion = 23874.205849 eV Total energy + Delta-G solvation = -3918.049186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.58154 -41.51564 -39.98324 -39.06775 -36.47715 -35.41350 -34.35820 -33.07571 -33.00912 -31.96592 -30.61929 -27.88642 -27.21574 -26.29743 -25.12649 -24.93337 -24.03701 -22.62449 -21.37454 -21.13107 -20.01845 -19.37337 -18.99607 -18.40387 -17.80090 -17.30300 -16.98718 -16.56100 -16.30020 -15.96583 -15.51612 -15.32586 -15.13771 -14.83978 -14.48126 -14.33256 -14.08580 -13.95373 -13.62317 -13.55955 -13.33002 -13.15045 -12.90602 -12.83590 -12.78428 -12.74893 -12.41982 -12.06984 -11.94171 -11.72637 -11.59658 -11.46245 -11.37264 -10.93931 -10.67103 -10.37710 -10.29683 -9.79207 -8.98795 -7.93499 -5.23029 -1.06147 -0.21883 0.92900 1.08895 1.47347 1.48696 1.49804 1.58833 1.73363 2.42878 2.56823 2.61858 3.06397 3.20736 3.30783 3.40568 3.54065 3.61391 3.74598 3.83766 4.07861 4.17645 4.26986 4.30017 4.31578 4.40543 4.55127 4.57162 4.66749 4.72779 4.82159 4.87474 4.91053 5.04365 5.10028 5.18942 5.24465 5.29225 5.38601 5.51266 5.57750 5.63298 6.27845 6.37472 6.40171 6.90748 6.95100 7.33578 8.10825 8.31431 9.30480 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002681 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.492315 B =10439.704667 C =11355.058210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.115 0.885 4 C 0.090 3.910 5 N -0.607 5.607 6 C 0.564 3.436 7 O -0.570 6.570 8 C -0.031 4.031 9 C -0.113 4.113 10 C 0.184 3.816 11 N -0.461 5.461 12 C 0.213 3.787 13 N -0.380 5.380 14 H 0.475 0.525 15 N -0.011 5.011 16 N -0.275 5.275 17 C -0.031 4.031 18 C 0.119 3.881 19 C -0.095 4.095 20 H 0.058 0.942 21 C 0.165 3.835 22 N -0.751 5.751 23 C -0.239 4.239 24 H 0.083 0.917 25 C -0.082 4.082 26 N -0.974 5.974 27 Si 0.974 3.026 28 H -0.260 1.260 29 H -0.296 1.296 30 H -0.297 1.297 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.202 0.798 37 H 0.244 0.756 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.033 0.967 42 H 0.369 0.631 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 5.572 -31.214 33.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.133 0.867 4 C -0.030 4.030 5 N -0.339 5.339 6 C 0.353 3.647 7 O -0.449 6.449 8 C -0.047 4.047 9 C -0.135 4.135 10 C 0.011 3.989 11 N -0.175 5.175 12 C -0.030 4.030 13 N -0.114 5.114 14 H 0.328 0.672 15 N 0.007 4.993 16 N -0.150 5.150 17 C -0.161 4.161 18 C -0.004 4.004 19 C -0.115 4.115 20 H 0.077 0.923 21 C 0.039 3.961 22 N -0.393 5.393 23 C -0.371 4.371 24 H 0.101 0.899 25 C -0.274 4.274 26 N -0.625 5.625 27 Si 0.804 3.196 28 H -0.184 1.184 29 H -0.223 1.223 30 H -0.224 1.224 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.219 0.781 37 H 0.260 0.740 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.201 0.799 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.189 3.645 -30.806 32.353 hybrid contribution 0.639 -0.304 1.561 1.714 sum -8.550 3.341 -29.245 30.652 Atomic orbital electron populations 1.21844 0.93081 1.01450 1.03352 1.22134 0.97179 1.00345 0.91239 0.86722 1.22968 0.96774 0.86048 0.97236 1.48754 1.52873 1.14840 1.17454 1.18073 0.81102 0.80511 0.85054 1.90857 1.39429 1.46576 1.68036 1.19486 0.98987 0.91065 0.95190 1.23164 0.96801 1.00467 0.93111 1.23942 0.88403 0.91774 0.94829 1.66539 1.19342 0.99078 1.32494 1.19905 1.01982 0.88402 0.92717 1.44706 1.45769 1.04809 1.16098 0.67237 1.78154 1.09287 1.21330 0.90551 1.75484 1.16716 0.99165 1.23661 1.20479 1.05944 0.94407 0.95281 1.22338 0.97812 0.98428 0.81792 1.22357 0.96060 0.97279 0.95811 0.92318 1.20822 0.97008 0.93054 0.85235 1.42697 1.79298 1.05683 1.11620 1.19711 1.34029 0.91879 0.91443 0.89937 1.25640 1.03790 0.96215 1.01759 1.69858 1.56425 1.06293 1.29933 0.85052 0.76816 0.78430 0.79348 1.18367 1.22296 1.22430 0.94171 0.92885 0.88911 0.86306 0.87901 0.78122 0.74013 0.94118 0.89760 0.94750 0.94936 0.79946 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.90 71.98 0.64 -1.49 16 2 C -0.09 -1.54 3.17 -9.90 -0.03 -1.57 16 3 H 0.11 1.52 7.85 -2.39 -0.02 1.51 16 4 C 0.09 1.22 4.89 86.53 0.42 1.64 16 5 N -0.61 -15.86 3.29 -813.46 -2.68 -18.54 16 6 C 0.56 17.95 7.62 86.80 0.66 18.61 16 7 O -0.57 -25.13 17.15 -3.87 -0.07 -25.20 16 8 C -0.03 -0.73 5.59 -19.79 -0.11 -0.84 16 9 C -0.11 -1.07 8.05 22.66 0.18 -0.89 16 10 C 0.18 1.05 11.14 84.82 0.94 1.99 16 11 N -0.46 -6.09 10.35 -193.09 -2.00 -8.09 16 12 C 0.21 4.22 8.56 134.17 1.15 5.37 16 13 N -0.38 -6.70 7.06 -55.48 -0.39 -7.09 16 14 H 0.48 3.82 8.96 -219.83 -1.97 1.85 16 15 N -0.01 -0.28 13.29 37.02 0.49 0.21 16 16 N -0.28 -9.28 12.40 -51.93 -0.64 -9.92 16 17 C -0.03 -0.85 7.00 40.06 0.28 -0.57 16 18 C 0.12 3.91 6.43 86.62 0.56 4.46 16 19 C -0.10 -2.85 2.60 -9.70 -0.03 -2.88 16 20 H 0.06 2.06 7.86 -2.39 -0.02 2.04 16 21 C 0.17 6.08 5.58 86.38 0.48 6.56 16 22 N -0.75 -38.35 5.52 -343.44 -1.90 -40.24 16 23 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 24 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 25 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 26 N -0.97 -62.25 13.06 21.65 0.28 -61.97 16 27 Si 0.97 46.99 29.55 68.60 2.03 49.01 16 28 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 30 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.12 0.65 7.45 -2.39 -0.02 0.63 16 35 H 0.10 0.91 6.07 -2.38 -0.01 0.89 16 36 H 0.20 0.29 5.66 -2.91 -0.02 0.27 16 37 H 0.24 -1.48 8.06 -2.91 -0.02 -1.51 16 38 H 0.04 1.73 7.90 -2.39 -0.02 1.72 16 39 H 0.08 2.65 7.94 -2.39 -0.02 2.63 16 40 H 0.03 1.21 8.00 -2.39 -0.02 1.19 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.37 20.88 7.67 -92.71 -0.71 20.17 16 43 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -92.50 360.15 -0.01 -92.51 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -1.60 Total: 15.82 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.46 Total: 13.51 kcal Atomic # 7 Polarization: -138.82 SS G_CDS: -6.84 Total: -145.65 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.07 Total: -25.20 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -92.50 -0.01 -92.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106407757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.458 kcal (2) G-P(sol) polarization free energy of solvation -92.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds