Wall clock time and date at job start Tue Mar 31 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.51361 * 2 1 4 4 N 1.46506 * 109.47231 * 304.90063 * 3 2 1 5 5 C 1.34775 * 120.00081 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00003 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00094 * 179.97438 * 5 4 3 8 8 F 1.39902 * 109.54440 * 54.99994 * 7 5 4 9 9 C 1.53179 * 109.54118 * 294.82564 * 7 5 4 10 10 C 1.53113 * 109.15628 * 183.24003 * 9 7 5 11 11 O 1.42902 * 109.48788 * 57.47163 * 10 9 7 12 12 C 1.42910 * 114.09785 * 298.89501 * 11 10 9 13 13 C 1.53087 * 109.41676 * 61.15182 * 12 11 10 14 14 C 1.53297 * 109.55509 * 120.12768 * 2 1 3 15 15 N 1.47162 * 108.41323 * 67.66797 * 14 2 1 16 16 C 1.36936 * 120.99426 * 230.54566 * 15 14 2 17 17 H 1.07993 * 120.00254 * 153.33118 * 16 15 14 18 18 C 1.38816 * 119.99594 * 333.33831 * 16 15 14 19 19 N 1.31616 * 120.00208 * 343.51894 * 18 16 15 20 20 Si 1.86797 * 119.99898 * 163.52381 * 18 16 15 21 21 H 1.48494 * 109.47385 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47024 * 119.99750 * 20 18 16 23 23 H 1.48498 * 109.47173 * 239.99607 * 20 18 16 24 24 C 1.47156 * 118.02918 * 50.46999 * 15 14 2 25 25 C 1.53293 * 108.41370 * 309.52999 * 24 15 14 26 26 O 1.42958 * 109.51055 * 239.89937 * 2 1 3 27 27 H 1.08997 * 109.47058 * 180.10083 * 1 2 3 28 28 H 1.08999 * 109.47304 * 300.10127 * 1 2 3 29 29 H 1.09001 * 109.47262 * 60.10273 * 1 2 3 30 30 H 1.09003 * 109.47290 * 64.89734 * 3 2 1 31 31 H 1.09005 * 109.47354 * 184.89783 * 3 2 1 32 32 H 0.97002 * 119.99693 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.52390 * 303.05138 * 9 7 5 34 34 H 1.09000 * 109.52526 * 63.24460 * 9 7 5 35 35 H 1.09001 * 109.40662 * 297.49419 * 10 9 7 36 36 H 1.08995 * 109.48988 * 177.50820 * 10 9 7 37 37 H 1.09006 * 109.47471 * 301.17125 * 12 11 10 38 38 H 1.08994 * 109.48667 * 181.14759 * 12 11 10 39 39 H 1.08997 * 109.52000 * 182.48738 * 13 12 11 40 40 H 1.09002 * 109.52224 * 62.29988 * 13 12 11 41 41 H 1.09001 * 109.67946 * 187.37261 * 14 2 1 42 42 H 1.08998 * 109.68018 * 307.91960 * 14 2 1 43 43 H 0.96998 * 120.00577 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.68193 * 189.79012 * 24 15 14 45 45 H 1.09004 * 109.68072 * 69.27006 * 24 15 14 46 46 H 1.09003 * 109.51304 * 172.20459 * 25 24 15 47 47 H 1.08999 * 109.51286 * 292.30582 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4593 2.1664 -1.1328 5 6 1.7687 3.4626 -1.3345 6 8 2.5291 4.0293 -0.5785 7 6 1.1707 4.2075 -2.5001 8 9 -0.2241 4.1103 -2.4517 9 6 1.6813 3.6022 -3.8113 10 6 1.1332 4.4154 -4.9871 11 8 1.5283 5.7815 -4.8473 12 6 1.0383 6.4123 -3.6622 13 6 1.5843 5.6808 -2.4333 14 6 2.0431 -0.7251 1.2494 15 7 1.6987 -2.1511 1.1336 16 6 1.0649 -2.8086 2.1540 17 1 0.4472 -3.6684 1.9409 18 6 1.2165 -2.3699 3.4622 19 7 2.1982 -1.5497 3.7717 20 14 0.0272 -2.9436 4.7834 21 1 -0.9795 -3.8544 4.1816 22 1 0.7759 -3.6643 5.8443 23 1 -0.6606 -1.7678 5.3747 24 6 2.0541 -2.8494 -0.1121 25 6 1.5405 -2.0208 -1.2951 26 8 2.0074 -0.6758 -1.1658 27 1 -0.3633 -1.0276 0.0018 28 1 -0.3634 0.5154 0.8891 29 1 -0.3634 0.5122 -0.8909 30 1 1.7515 1.9303 0.9306 31 1 3.1276 1.4426 -0.0877 32 1 0.8514 1.7131 -1.7377 33 1 2.7709 3.6317 -3.8262 34 1 1.3429 2.5692 -3.8918 35 1 0.0451 4.3508 -4.9961 36 1 1.5288 4.0163 -5.9210 37 1 -0.0511 6.3738 -3.6539 38 1 1.3654 7.4518 -3.6417 39 1 1.1765 6.1329 -1.5293 40 1 2.6718 5.7535 -2.4194 41 1 3.1251 -0.6138 1.3200 42 1 1.5716 -0.3044 2.1375 43 1 2.3044 -1.2434 4.6859 44 1 1.5899 -3.8354 -0.1255 45 1 3.1372 -2.9526 -0.1789 46 1 1.9121 -2.4473 -2.2269 47 1 0.4505 -2.0297 -1.2999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107986666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:22 Heat of formation + Delta-G solvation = -150.083813 kcal Electronic energy + Delta-G solvation = -30338.200875 eV Core-core repulsion = 26050.351756 eV Total energy + Delta-G solvation = -4287.849119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.23368 -40.08144 -39.19933 -38.57129 -35.13665 -34.41204 -33.45194 -31.90931 -31.44110 -31.29113 -28.01909 -27.19445 -26.18639 -25.02806 -24.07118 -23.28796 -21.72775 -21.00955 -20.11918 -18.86985 -18.09995 -17.09328 -16.89825 -16.45539 -16.15998 -15.91585 -15.54562 -15.36548 -15.18470 -14.86325 -14.75106 -14.35798 -14.16603 -14.01651 -13.57175 -13.22686 -12.99126 -12.91498 -12.88063 -12.78640 -12.60842 -12.50424 -11.99126 -11.77287 -11.64279 -11.24871 -11.09055 -11.05104 -10.93175 -10.87131 -10.71074 -10.36821 -10.27492 -10.21898 -10.04140 -9.71379 -9.56541 -9.11639 -8.99535 -8.58956 -6.78809 -5.89193 -3.33094 2.37660 2.93424 3.30477 3.38769 3.40346 3.50078 3.92499 4.01628 4.15860 4.35094 4.39629 4.41703 4.50574 4.82940 4.97960 5.05854 5.11828 5.22196 5.29093 5.29617 5.31168 5.40179 5.44998 5.55062 5.60943 5.66898 5.82767 5.86380 5.87523 5.92624 6.00317 6.07449 6.22639 6.36710 6.46534 6.58925 6.69343 6.76883 6.78255 7.01177 7.39613 7.42521 7.66940 7.80986 8.05337 8.28317 9.06061 9.69014 10.26101 11.18902 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.002939 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.533591 B = 9525.654110 C =10055.438660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 C 0.137 3.863 4 N -0.704 5.704 5 C 0.497 3.503 6 O -0.526 6.526 7 C 0.107 3.893 8 F -0.192 7.192 9 C -0.175 4.175 10 C 0.062 3.938 11 O -0.380 6.380 12 C 0.060 3.940 13 C -0.160 4.160 14 C 0.161 3.839 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.385 6.385 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.404 0.596 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.030 0.970 42 H 0.096 0.904 43 H 0.255 0.745 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.081 0.919 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 11.173 -16.403 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 C 0.014 3.986 4 N -0.355 5.355 5 C 0.280 3.720 6 O -0.402 6.402 7 C 0.085 3.915 8 F -0.173 7.173 9 C -0.213 4.213 10 C -0.014 4.014 11 O -0.298 6.298 12 C -0.017 4.017 13 C -0.198 4.198 14 C 0.034 3.966 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.305 6.305 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.240 0.760 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.048 0.952 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.044 0.956 46 H 0.099 0.901 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.870 11.769 -15.917 20.003 hybrid contribution -1.239 -0.975 1.008 1.871 sum -4.109 10.794 -14.910 18.860 Atomic orbital electron populations 1.22211 0.95684 1.03352 1.00760 1.22555 0.93625 0.90473 0.89665 1.21450 0.98916 0.89631 0.88629 1.46026 1.48096 1.10559 1.30833 1.20594 0.82607 0.82756 0.86041 1.90740 1.35783 1.67732 1.45925 1.21218 0.76554 0.98030 0.95676 1.92902 1.29582 1.97361 1.97443 1.22821 1.03860 1.01362 0.93261 1.22572 0.99438 0.81640 0.97785 1.87956 1.75565 1.24485 1.41818 1.22640 0.98459 0.97125 0.83464 1.22578 1.04544 0.92017 1.00641 1.21282 0.97844 0.83980 0.93506 1.44000 1.68725 1.04881 1.13819 1.19194 1.21451 1.12436 0.85289 0.91358 1.25057 0.97268 1.00036 0.97158 1.70012 1.29210 1.36823 1.18480 0.86216 0.80643 0.78070 0.81804 1.20233 1.21612 1.21449 1.21598 0.97575 0.95242 0.87316 1.23044 0.98343 0.83026 0.98783 1.87809 1.72978 1.25899 1.43765 0.90660 0.91788 0.93972 0.89718 0.90469 0.75980 0.88391 0.88816 0.92231 0.87786 0.92377 0.87831 0.88878 0.88135 0.95205 0.88544 0.93448 0.92005 0.95627 0.90132 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 7.86 37.16 0.29 -2.44 16 2 C 0.08 1.41 0.78 -90.47 -0.07 1.34 16 3 C 0.14 2.29 4.85 -4.04 -0.02 2.27 16 4 N -0.70 -9.99 5.16 -60.29 -0.31 -10.30 16 5 C 0.50 7.15 6.83 -10.99 -0.08 7.07 16 6 O -0.53 -9.21 15.94 5.55 0.09 -9.12 16 7 C 0.11 1.20 1.07 -91.59 -0.10 1.10 16 8 F -0.19 -2.25 16.06 2.25 0.04 -2.22 16 9 C -0.17 -1.59 5.17 -26.58 -0.14 -1.73 16 10 C 0.06 0.51 6.72 37.22 0.25 0.76 16 11 O -0.38 -3.72 10.77 -35.23 -0.38 -4.10 16 12 C 0.06 0.51 6.72 37.20 0.25 0.76 16 13 C -0.16 -1.63 4.56 -26.60 -0.12 -1.75 16 14 C 0.16 3.66 4.11 -3.53 -0.01 3.65 16 15 N -0.59 -14.12 2.57 -171.82 -0.44 -14.56 16 16 C -0.25 -6.67 9.65 -15.06 -0.15 -6.81 16 17 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 19 N -0.90 -25.36 11.14 55.49 0.62 -24.74 16 20 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.11 2.19 6.73 -3.53 -0.02 2.16 16 25 C 0.05 0.77 6.60 37.31 0.25 1.01 16 26 O -0.38 -6.86 10.17 -35.23 -0.36 -7.21 16 27 H 0.07 1.38 6.12 -51.93 -0.32 1.06 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.60 6.59 -51.93 -0.34 0.25 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.40 5.14 6.88 -40.82 -0.28 4.86 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.08 7.96 -51.93 -0.41 0.66 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.10 2.44 6.16 -51.93 -0.32 2.12 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.78 6.26 -51.93 -0.33 0.46 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -30.61 368.73 -7.40 -38.01 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.43 Total: 5.24 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 0.25 Total: 7.42 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.13 Total: -49.60 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.65 Total: -20.43 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.61 -7.40 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107986666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.077 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds