Wall clock time and date at job start Tue Mar 31 2020 04:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99972 * 2 1 4 4 H 1.48501 * 109.46987 * 269.99674 * 3 2 1 5 5 H 1.48493 * 109.47222 * 29.99957 * 3 2 1 6 6 H 1.48502 * 109.46853 * 150.00358 * 3 2 1 7 7 C 1.38810 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99941 * 164.46321 * 7 2 1 9 9 N 1.36935 * 120.00058 * 344.45450 * 7 2 1 10 10 C 1.47090 * 121.01085 * 155.89908 * 9 7 2 11 11 C 1.53255 * 109.21746 * 116.43571 * 10 9 7 12 12 N 1.46556 * 109.24045 * 45.98233 * 11 10 9 13 13 N 1.39749 * 127.32195 * 161.54356 * 12 11 10 14 14 C 1.31006 * 108.17885 * 179.45647 * 13 12 11 15 15 C 1.40073 * 108.25295 * 0.35335 * 14 13 12 16 16 C 1.50709 * 126.12313 * 179.83823 * 15 14 13 17 17 N 1.46503 * 109.46729 * 259.88192 * 16 15 14 18 18 C 1.34774 * 119.99603 * 179.97438 * 17 16 15 19 19 O 1.21279 * 119.99984 * 0.02562 * 18 17 16 20 20 C 1.50702 * 119.99814 * 180.02562 * 18 17 16 21 21 N 1.46503 * 109.46783 * 180.02562 * 20 18 17 22 22 C 1.34943 * 126.03830 * 125.00648 * 21 20 18 23 23 C 1.35319 * 107.74827 * 179.97438 * 22 21 20 24 24 C 1.39867 * 107.91790 * 359.97438 * 23 22 21 25 25 N 1.30838 * 108.20248 * 359.73947 * 24 23 22 26 26 C 1.34642 * 107.75113 * 359.73997 * 15 14 13 27 27 C 1.47494 * 121.01655 * 335.91821 * 9 7 2 28 28 H 0.97001 * 120.00162 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.51221 * 236.35400 * 10 9 7 30 30 H 1.09002 * 109.51614 * 356.51471 * 10 9 7 31 31 H 1.09005 * 109.51221 * 165.90878 * 11 10 9 32 32 H 1.08998 * 109.51015 * 286.05344 * 11 10 9 33 33 H 1.08007 * 125.87560 * 180.16746 * 14 13 12 34 34 H 1.08997 * 109.46733 * 19.88206 * 16 15 14 35 35 H 1.08991 * 109.46853 * 139.88617 * 16 15 14 36 36 H 0.96995 * 120.00215 * 0.02562 * 17 16 15 37 37 H 1.09002 * 109.47089 * 300.00258 * 20 18 17 38 38 H 1.08995 * 109.47464 * 60.00664 * 20 18 17 39 39 H 1.08002 * 126.13036 * 359.95140 * 22 21 20 40 40 H 1.08002 * 126.03994 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.89956 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.94630 * 103.52359 * 27 9 7 43 43 H 1.09000 * 109.94446 * 342.27325 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0606 -1.2192 -0.2511 9 7 1.3630 -2.3665 0.3168 10 6 1.8638 -3.6654 -0.1581 11 6 2.2728 -4.5195 1.0469 12 7 1.2233 -4.4490 2.0674 13 7 1.0193 -5.3273 3.1351 14 6 -0.0156 -4.9059 3.8189 15 6 -0.5079 -3.7490 3.2015 16 6 -1.6938 -2.9365 3.6540 17 7 -2.8618 -3.2821 2.8399 18 6 -4.0443 -2.6766 3.0668 19 8 -4.1414 -1.8454 3.9445 20 6 -5.2459 -3.0326 2.2298 21 7 -6.3986 -2.2426 2.6696 22 6 -7.1619 -1.4495 1.8890 23 6 -8.1192 -0.8992 2.6712 24 6 -7.9351 -1.3727 3.9743 25 7 -6.9076 -2.1828 3.9733 26 6 0.2694 -3.4917 2.1326 27 6 0.1424 -2.3563 1.1447 28 1 -0.4850 0.8400 -0.0004 29 1 1.0792 -4.1760 -0.7166 30 1 2.7281 -3.5087 -0.8034 31 1 2.4050 -5.5545 0.7315 32 1 3.2081 -4.1418 1.4600 33 1 -0.4215 -5.3723 4.7045 34 1 -1.9040 -3.1528 4.7014 35 1 -1.4722 -1.8755 3.5394 36 1 -2.7842 -3.9472 2.1381 37 1 -5.0359 -2.8163 1.1823 38 1 -5.4672 -4.0937 2.3444 39 1 -7.0318 -1.2832 0.8298 40 1 -8.8895 -0.2152 2.3465 41 1 -8.5392 -1.1172 4.8323 42 1 -0.7348 -2.5069 0.5157 43 1 0.0617 -1.4081 1.6763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128186585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:30 Heat of formation + Delta-G solvation = 159.631465 kcal Electronic energy + Delta-G solvation = -27834.266010 eV Core-core repulsion = 23919.368786 eV Total energy + Delta-G solvation = -3914.897224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16728 -41.01996 -39.19620 -36.37173 -34.85520 -33.34910 -33.01669 -31.35541 -30.28233 -30.06552 -29.12939 -27.45239 -25.99459 -24.68573 -23.52850 -21.85857 -21.41134 -21.06222 -20.29045 -20.03784 -18.49054 -17.43303 -17.19565 -16.77986 -16.07137 -15.63585 -15.59107 -15.16708 -14.75349 -14.38838 -14.21217 -13.90722 -13.77955 -13.59616 -13.43870 -13.24696 -13.12744 -12.95804 -12.69394 -12.52191 -12.14191 -11.74609 -11.65287 -11.35622 -11.03363 -10.93024 -10.77376 -10.60205 -10.25840 -10.24541 -10.13688 -10.01210 -9.31552 -8.96304 -8.83549 -8.61588 -8.58532 -7.98656 -7.14163 -6.07331 -3.49644 1.88658 2.33209 2.42075 2.71755 2.89930 2.91725 2.96148 3.25200 3.34133 3.35176 3.60808 4.27114 4.51729 4.75945 4.84437 4.89848 4.91828 5.00949 5.07655 5.15444 5.31925 5.45925 5.50494 5.55687 5.56550 5.66564 5.76361 5.80448 6.00839 6.08146 6.16919 6.31424 6.35667 6.47947 6.59790 6.66057 6.83901 6.93622 7.02891 7.07897 7.51654 7.54984 7.65376 7.74754 8.03616 8.17883 8.33940 8.86495 9.49016 10.01188 11.03751 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.003522 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.979422 B = 7947.623705 C = 9859.134692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.009 3.991 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.129 3.871 11 C 0.113 3.887 12 N -0.358 5.358 13 N -0.317 5.317 14 C 0.057 3.943 15 C -0.289 4.289 16 C 0.213 3.787 17 N -0.717 5.717 18 C 0.498 3.502 19 O -0.516 6.516 20 C 0.114 3.886 21 N -0.360 5.360 22 C 0.054 3.946 23 C -0.275 4.275 24 C 0.036 3.964 25 N -0.268 5.268 26 C 0.120 3.880 27 C 0.231 3.769 28 H 0.259 0.741 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.176 0.824 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.400 0.600 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.174 0.826 40 H 0.146 0.854 41 H 0.180 0.820 42 H 0.056 0.944 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 -7.912 1.106 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.737 3.263 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.319 5.319 10 C 0.001 3.999 11 C -0.010 4.010 12 N -0.139 5.139 13 N -0.137 5.137 14 C -0.130 4.130 15 C -0.301 4.301 16 C 0.089 3.911 17 N -0.369 5.369 18 C 0.282 3.718 19 O -0.390 6.390 20 C -0.012 4.012 21 N -0.143 5.143 22 C -0.092 4.092 23 C -0.304 4.304 24 C -0.151 4.151 25 N -0.088 5.088 26 C -0.012 4.012 27 C 0.105 3.895 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.193 0.807 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.234 0.766 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.191 0.809 40 H 0.164 0.836 41 H 0.197 0.803 42 H 0.074 0.926 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.181 -8.892 2.186 12.279 hybrid contribution -0.517 1.625 -0.817 1.891 sum -8.699 -7.267 1.369 11.417 Atomic orbital electron populations 1.69926 1.05268 1.26298 1.53256 1.25021 0.95454 0.98595 0.99937 0.86214 0.79171 0.83049 0.77872 1.21110 1.21234 1.20330 1.19150 0.92488 0.83910 1.43757 0.90875 1.44201 1.29241 1.01390 1.57067 1.21276 0.99282 0.87347 0.92017 1.22558 0.88763 1.01534 0.88190 1.48510 1.24028 1.19471 1.21857 1.77180 1.19982 1.16545 1.00017 1.23687 0.94438 0.95289 0.99567 1.19414 1.05021 1.03425 1.02261 1.19300 0.80295 0.97975 0.93507 1.46122 1.09222 1.43362 1.38209 1.20391 0.84133 0.82309 0.85005 1.90783 1.84107 1.32065 1.32052 1.21514 0.83067 0.96886 0.99707 1.48081 1.23298 1.36383 1.06511 1.22568 0.93442 0.94910 0.98240 1.21465 1.05328 1.10111 0.93520 1.23886 0.96086 0.96975 0.98162 1.77472 1.11913 1.22126 0.97327 1.22585 0.88493 0.92822 0.97308 1.19910 0.89280 0.92235 0.88123 0.93057 0.94608 0.89694 0.90152 0.90570 0.80719 0.91244 0.90817 0.76645 0.85613 0.87024 0.80918 0.83648 0.80267 0.92646 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 11.07 55.49 0.61 -23.39 16 2 C 0.01 0.24 5.00 -17.43 -0.09 0.15 16 3 Si 0.91 20.52 29.58 -169.99 -5.03 15.49 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.26 -6.61 9.67 -15.06 -0.15 -6.76 16 8 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 9 N -0.60 -13.45 3.01 -172.97 -0.52 -13.98 16 10 C 0.13 2.32 6.49 -3.59 -0.02 2.30 16 11 C 0.11 1.86 7.44 -3.88 -0.03 1.83 16 12 N -0.36 -6.63 4.03 -56.93 -0.23 -6.86 16 13 N -0.32 -5.70 12.61 30.70 0.39 -5.31 16 14 C 0.06 0.90 11.97 -17.22 -0.21 0.69 16 15 C -0.29 -4.81 5.46 -105.20 -0.57 -5.38 16 16 C 0.21 3.32 5.95 -5.19 -0.03 3.29 16 17 N -0.72 -9.62 5.55 -61.47 -0.34 -9.96 16 18 C 0.50 7.29 7.86 -10.99 -0.09 7.20 16 19 O -0.52 -10.01 15.72 5.56 0.09 -9.93 16 20 C 0.11 1.22 6.99 -5.19 -0.04 1.18 16 21 N -0.36 -4.77 3.39 -62.54 -0.21 -4.98 16 22 C 0.05 0.60 11.45 -17.22 -0.20 0.40 16 23 C -0.27 -3.06 10.80 -40.01 -0.43 -3.49 16 24 C 0.04 0.45 12.03 -17.37 -0.21 0.24 16 25 N -0.27 -4.12 11.66 30.62 0.36 -3.76 16 26 C 0.12 2.28 6.71 -82.17 -0.55 1.73 16 27 C 0.23 5.01 5.11 -4.49 -0.02 4.98 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.41 7.94 -51.93 -0.41 0.99 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.18 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.40 4.50 8.46 -40.82 -0.35 4.15 16 37 H 0.13 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.11 2.69 6.46 -51.93 -0.34 2.35 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -34.07 367.23 -7.70 -41.76 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.71 Total: 7.03 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.63 Total: 8.36 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: 0.05 Total: -68.24 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.07 -7.70 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128186585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.392 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds