Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46054 * 2 1 4 4 C 1.53034 * 109.45846 * 240.03228 * 2 1 3 5 5 C 1.53195 * 109.31153 * 301.35416 * 4 2 1 6 6 N 1.46918 * 108.77732 * 305.36570 * 5 4 2 7 7 C 1.34775 * 120.63470 * 233.58773 * 6 5 4 8 8 O 1.21275 * 120.00279 * 180.02562 * 7 6 5 9 9 C 1.50703 * 119.99776 * 359.97438 * 7 6 5 10 10 S 1.81000 * 109.47042 * 180.02562 * 9 7 6 11 11 C 1.76199 * 99.99871 * 180.02562 * 10 9 7 12 12 H 1.08009 * 120.00150 * 359.72084 * 11 10 9 13 13 C 1.38795 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31634 * 120.00230 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00277 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47477 * 89.99967 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00072 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99693 * 15 13 11 19 19 C 1.46927 * 118.73745 * 53.86036 * 6 5 4 20 20 C 1.53039 * 109.44982 * 119.96660 * 2 1 3 21 21 H 1.09003 * 109.49411 * 178.59621 * 20 2 1 22 22 C 1.52998 * 109.50099 * 298.66338 * 20 2 1 23 23 N 1.46892 * 109.47155 * 184.99792 * 22 20 2 24 24 C 1.46905 * 111.00101 * 179.97438 * 23 22 20 25 25 C 1.52997 * 109.47137 * 180.02562 * 24 23 22 26 26 C 1.53005 * 109.46770 * 180.02562 * 25 24 23 27 27 O 1.42904 * 109.46924 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.46945 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46556 * 299.96997 * 1 2 3 30 30 H 1.09000 * 109.47163 * 59.96550 * 1 2 3 31 31 H 1.09004 * 109.49800 * 181.40761 * 4 2 1 32 32 H 1.08998 * 109.50301 * 61.30720 * 4 2 1 33 33 H 1.09002 * 109.58478 * 185.57799 * 5 4 2 34 34 H 1.09003 * 109.58235 * 65.15852 * 5 4 2 35 35 H 1.09000 * 109.46904 * 60.00309 * 9 7 6 36 36 H 1.09005 * 109.47194 * 300.00350 * 9 7 6 37 37 H 0.96991 * 120.00676 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.59065 * 65.92824 * 19 6 5 39 39 H 1.09000 * 109.59076 * 186.35454 * 19 6 5 40 40 H 1.09001 * 109.46909 * 305.00546 * 22 20 2 41 41 H 1.08996 * 109.46741 * 64.99935 * 22 20 2 42 42 H 1.00901 * 111.00190 * 56.04850 * 23 22 20 43 43 H 1.09003 * 109.46891 * 300.00526 * 24 23 22 44 44 H 1.09000 * 109.46702 * 60.00359 * 24 23 22 45 45 H 1.08997 * 109.47124 * 299.99730 * 25 24 23 46 46 H 1.09000 * 109.47223 * 60.00443 * 25 24 23 47 47 H 1.08997 * 109.46936 * 299.99672 * 26 25 24 48 48 H 1.09000 * 109.47027 * 60.00150 * 26 25 24 49 49 H 0.96696 * 114.00161 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 1.4993 -2.1541 -1.2642 6 7 1.8620 -2.8089 0.0000 7 6 2.5149 -3.9879 0.0001 8 8 2.8084 -4.5185 1.0504 9 6 2.8794 -4.6475 -1.3050 10 16 3.7409 -6.2045 -0.9742 11 6 4.0403 -6.7451 -2.6243 12 1 3.7040 -6.1466 -3.4581 13 6 4.7027 -7.9433 -2.8527 14 7 5.1078 -8.6755 -1.8365 15 14 5.0207 -8.5161 -4.6020 16 1 6.3303 -7.9906 -5.0647 17 1 5.0413 -10.0004 -4.6408 18 1 3.9432 -8.0126 -5.4913 19 6 1.4941 -2.1569 1.2642 20 6 2.0396 -0.7208 1.2501 21 1 3.1294 -0.7431 1.2384 22 6 1.5574 0.0199 2.4990 23 7 2.1442 -0.6012 3.6938 24 6 1.7028 0.0858 4.9150 25 6 2.3338 -0.5875 6.1354 26 6 1.8735 0.1277 7.4073 27 8 2.4623 -0.5016 8.5472 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5134 0.8903 30 1 -0.3633 0.5144 -0.8897 31 1 3.1296 -0.7431 -1.2382 32 1 1.6959 -0.1935 -2.1398 33 1 1.9379 -2.7018 -2.0984 34 1 0.4143 -2.1344 -1.3675 35 1 3.5301 -3.9862 -1.8770 36 1 1.9729 -4.8484 -1.8762 37 1 5.5710 -9.5126 -1.9961 38 1 0.4088 -2.1375 1.3631 39 1 1.9293 -2.7063 2.0990 40 1 1.8653 1.0640 2.4437 41 1 0.4704 -0.0357 2.5573 42 1 3.1513 -0.6201 3.6340 43 1 2.0122 1.1303 4.8762 44 1 0.6168 0.0310 4.9903 45 1 2.0247 -1.6320 6.1743 46 1 3.4197 -0.5324 6.0599 47 1 2.1821 1.1723 7.3686 48 1 0.7875 0.0722 7.4825 49 1 2.2135 -0.0996 9.3907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132688289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -101.120322 kcal Electronic energy + Delta-G solvation = -26230.138757 eV Core-core repulsion = 22510.626031 eV Total energy + Delta-G solvation = -3719.512726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28293 -38.15643 -37.57720 -36.25787 -33.85059 -32.54910 -32.39256 -30.74398 -29.21942 -27.82589 -25.85780 -25.42276 -24.53126 -23.91760 -21.95535 -21.62949 -19.82653 -18.32886 -17.72611 -17.54920 -16.72533 -16.54366 -15.86333 -15.56315 -15.35571 -15.12005 -14.85206 -14.77696 -14.42359 -14.30751 -13.81988 -13.61076 -13.43718 -13.28037 -13.05117 -12.69916 -12.54834 -12.21479 -12.11337 -11.95710 -11.81246 -11.55785 -11.47830 -11.37337 -11.18286 -11.04160 -10.98852 -10.87564 -10.73122 -10.57010 -10.43630 -10.34634 -9.76344 -9.23036 -9.03546 -8.69983 -8.34187 -8.17147 -6.45604 -6.18168 -3.88303 3.02927 3.16209 3.24273 3.28925 3.32773 3.53505 3.67079 4.14617 4.23437 4.47601 4.57189 4.60293 4.64232 4.81716 4.85947 4.92707 4.98935 5.04811 5.11685 5.14111 5.16655 5.19419 5.25481 5.28946 5.33927 5.39891 5.44657 5.47283 5.61022 5.69857 5.73882 5.78294 5.79535 5.84188 5.92450 5.93162 5.97143 6.05352 6.16861 6.19494 6.31894 6.71448 6.78768 7.08252 7.24440 7.62417 7.69490 8.38388 8.68395 9.26871 10.89234 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.002403 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.881732 B =11647.245845 C =13434.812590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.130 4.130 5 C 0.106 3.894 6 N -0.620 5.620 7 C 0.534 3.466 8 O -0.515 6.515 9 C -0.150 4.150 10 S -0.061 6.061 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.127 3.873 20 C -0.095 4.095 21 H 0.074 0.926 22 C 0.068 3.932 23 N -0.688 5.688 24 C 0.065 3.935 25 C -0.122 4.122 26 C 0.078 3.922 27 O -0.574 6.574 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.345 0.655 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.042 0.958 48 H 0.046 0.954 49 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 24.850 9.654 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.168 4.168 5 C -0.018 4.018 6 N -0.356 5.356 7 C 0.321 3.679 8 O -0.389 6.389 9 C -0.301 4.301 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.004 3.996 20 C -0.115 4.115 21 H 0.093 0.907 22 C -0.062 4.062 23 N -0.319 5.319 24 C -0.064 4.064 25 C -0.160 4.160 26 C 0.000 4.000 27 O -0.379 6.379 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.227 23.001 10.848 27.410 hybrid contribution 0.106 1.597 -2.089 2.632 sum -10.121 24.599 8.759 28.005 Atomic orbital electron populations 1.22001 0.95141 1.02455 1.01518 1.21076 0.96047 0.98901 0.94348 0.91266 1.21944 1.01431 0.95654 0.97783 1.21727 1.00026 0.93157 0.86875 1.48119 1.59027 1.21791 1.06712 1.20294 0.76467 0.79861 0.91234 1.90695 1.52357 1.62579 1.33280 1.23552 1.04576 1.04554 0.97379 1.85416 1.71690 1.15091 1.11253 1.22863 1.43647 1.09583 0.92168 0.91003 1.24991 0.94924 0.95498 0.98211 1.70019 1.36596 1.13307 1.30347 0.86179 0.78716 0.77883 0.82778 1.20299 1.20772 1.19721 1.21570 0.99100 0.91640 0.87261 1.21619 1.00904 0.95620 0.93363 0.90719 1.22000 1.00144 0.95080 0.88970 1.60382 1.14567 1.55760 1.01198 1.21789 1.00406 0.94874 0.89375 1.21487 1.01446 1.01501 0.91578 1.22106 0.96396 0.95306 0.86212 1.86508 1.74027 1.60589 1.16778 0.91836 0.92653 0.92694 0.91297 0.90737 0.89413 0.91454 0.89434 0.89430 0.92212 0.92065 0.87966 0.95127 0.90537 0.83715 0.95399 0.90888 0.89932 0.91219 0.93929 0.93587 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.11 37.16 0.30 -0.82 16 2 C -0.08 -0.69 2.71 -90.58 -0.25 -0.93 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.17 5.63 -26.61 -0.15 -1.32 16 5 C 0.11 1.19 5.87 -3.71 -0.02 1.16 16 6 N -0.62 -9.10 2.97 -172.50 -0.51 -9.61 16 7 C 0.53 10.52 7.72 -10.98 -0.08 10.44 16 8 O -0.52 -12.20 15.27 5.56 0.08 -12.12 16 9 C -0.15 -3.13 4.50 36.01 0.16 -2.97 16 10 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 11 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 15 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.13 1.63 5.10 -3.48 -0.02 1.61 16 20 C -0.10 -0.93 2.27 -90.28 -0.20 -1.13 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 C 0.07 0.55 4.61 -3.83 -0.02 0.53 16 23 N -0.69 -6.25 6.09 -113.78 -0.69 -6.95 16 24 C 0.06 0.49 5.68 -3.82 -0.02 0.46 16 25 C -0.12 -1.03 5.84 -26.73 -0.16 -1.19 16 26 C 0.08 0.54 7.05 37.16 0.26 0.81 16 27 O -0.57 -4.84 13.66 -35.23 -0.48 -5.32 16 28 H 0.06 0.53 4.96 -51.93 -0.26 0.27 16 29 H 0.05 0.36 6.57 -51.93 -0.34 0.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 34 H 0.07 0.66 6.69 -51.93 -0.35 0.32 16 35 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 36 H 0.09 1.70 7.94 -51.91 -0.41 1.29 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.06 0.73 6.69 -51.93 -0.35 0.38 16 39 H 0.10 1.62 6.80 -51.93 -0.35 1.27 16 40 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.08 0.60 6.73 -51.93 -0.35 0.26 16 42 H 0.34 3.16 8.73 -39.29 -0.34 2.81 16 43 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.38 1.35 9.12 45.56 0.42 1.77 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -35.69 394.41 -9.82 -45.50 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.66 Total: 2.05 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.00 Total: -6.44 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.47 Total: -42.29 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.40 Total: -17.44 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.69 -9.82 -45.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132688289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.615 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds