Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46054 * 2 1 4 4 C 1.53034 * 109.45846 * 240.03228 * 2 1 3 5 5 C 1.53195 * 109.31153 * 301.35416 * 4 2 1 6 6 N 1.46918 * 108.77732 * 305.36570 * 5 4 2 7 7 C 1.34775 * 120.63470 * 233.58773 * 6 5 4 8 8 O 1.21275 * 120.00279 * 180.02562 * 7 6 5 9 9 C 1.50703 * 119.99776 * 359.97438 * 7 6 5 10 10 S 1.81000 * 109.47042 * 180.02562 * 9 7 6 11 11 C 1.76199 * 99.99871 * 180.02562 * 10 9 7 12 12 H 1.08009 * 120.00150 * 359.72084 * 11 10 9 13 13 C 1.38795 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31634 * 120.00230 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00277 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47477 * 89.99967 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00072 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99693 * 15 13 11 19 19 C 1.46927 * 118.73745 * 53.86036 * 6 5 4 20 20 C 1.53039 * 109.44982 * 119.96660 * 2 1 3 21 21 H 1.09003 * 109.49411 * 178.59621 * 20 2 1 22 22 C 1.52998 * 109.50099 * 298.66338 * 20 2 1 23 23 N 1.46892 * 109.47155 * 184.99792 * 22 20 2 24 24 C 1.46905 * 111.00101 * 179.97438 * 23 22 20 25 25 C 1.52997 * 109.47137 * 180.02562 * 24 23 22 26 26 C 1.53005 * 109.46770 * 180.02562 * 25 24 23 27 27 O 1.42904 * 109.46924 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.46945 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46556 * 299.96997 * 1 2 3 30 30 H 1.09000 * 109.47163 * 59.96550 * 1 2 3 31 31 H 1.09004 * 109.49800 * 181.40761 * 4 2 1 32 32 H 1.08998 * 109.50301 * 61.30720 * 4 2 1 33 33 H 1.09002 * 109.58478 * 185.57799 * 5 4 2 34 34 H 1.09003 * 109.58235 * 65.15852 * 5 4 2 35 35 H 1.09000 * 109.46904 * 60.00309 * 9 7 6 36 36 H 1.09005 * 109.47194 * 300.00350 * 9 7 6 37 37 H 0.96991 * 120.00676 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.59065 * 65.92824 * 19 6 5 39 39 H 1.09000 * 109.59076 * 186.35454 * 19 6 5 40 40 H 1.09001 * 109.46909 * 305.00546 * 22 20 2 41 41 H 1.08996 * 109.46741 * 64.99935 * 22 20 2 42 42 H 1.00901 * 111.00190 * 56.04850 * 23 22 20 43 43 H 1.09003 * 109.46891 * 300.00526 * 24 23 22 44 44 H 1.09000 * 109.46702 * 60.00359 * 24 23 22 45 45 H 1.08997 * 109.47124 * 299.99730 * 25 24 23 46 46 H 1.09000 * 109.47223 * 60.00443 * 25 24 23 47 47 H 1.08997 * 109.46936 * 299.99672 * 26 25 24 48 48 H 1.09000 * 109.47027 * 60.00150 * 26 25 24 49 49 H 0.96696 * 114.00161 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 1.4993 -2.1541 -1.2642 6 7 1.8620 -2.8089 0.0000 7 6 2.5149 -3.9879 0.0001 8 8 2.8084 -4.5185 1.0504 9 6 2.8794 -4.6475 -1.3050 10 16 3.7409 -6.2045 -0.9742 11 6 4.0403 -6.7451 -2.6243 12 1 3.7040 -6.1466 -3.4581 13 6 4.7027 -7.9433 -2.8527 14 7 5.1078 -8.6755 -1.8365 15 14 5.0207 -8.5161 -4.6020 16 1 6.3303 -7.9906 -5.0647 17 1 5.0413 -10.0004 -4.6408 18 1 3.9432 -8.0126 -5.4913 19 6 1.4941 -2.1569 1.2642 20 6 2.0396 -0.7208 1.2501 21 1 3.1294 -0.7431 1.2384 22 6 1.5574 0.0199 2.4990 23 7 2.1442 -0.6012 3.6938 24 6 1.7028 0.0858 4.9150 25 6 2.3338 -0.5875 6.1354 26 6 1.8735 0.1277 7.4073 27 8 2.4623 -0.5016 8.5472 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5134 0.8903 30 1 -0.3633 0.5144 -0.8897 31 1 3.1296 -0.7431 -1.2382 32 1 1.6959 -0.1935 -2.1398 33 1 1.9379 -2.7018 -2.0984 34 1 0.4143 -2.1344 -1.3675 35 1 3.5301 -3.9862 -1.8770 36 1 1.9729 -4.8484 -1.8762 37 1 5.5710 -9.5126 -1.9961 38 1 0.4088 -2.1375 1.3631 39 1 1.9293 -2.7063 2.0990 40 1 1.8653 1.0640 2.4437 41 1 0.4704 -0.0357 2.5573 42 1 3.1513 -0.6201 3.6340 43 1 2.0122 1.1303 4.8762 44 1 0.6168 0.0310 4.9903 45 1 2.0247 -1.6320 6.1743 46 1 3.4197 -0.5324 6.0599 47 1 2.1821 1.1723 7.3686 48 1 0.7875 0.0722 7.4825 49 1 2.2135 -0.0996 9.3907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132688289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -128.532042 kcal Electronic energy + Delta-G solvation = -26231.327419 eV Core-core repulsion = 22510.626031 eV Total energy + Delta-G solvation = -3720.701388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41116 -39.31723 -38.27846 -37.00725 -34.93456 -34.58468 -33.33080 -31.72984 -30.58972 -28.55651 -27.70797 -26.57608 -25.56360 -24.62975 -22.69852 -22.32316 -21.07957 -19.78772 -19.01251 -18.32965 -18.13191 -17.32436 -16.89625 -16.84015 -16.58279 -16.33207 -16.07558 -15.87415 -15.65595 -15.21493 -14.90807 -14.63818 -14.52922 -14.41522 -14.05848 -13.94335 -13.49530 -13.42752 -13.16899 -13.01844 -12.91524 -12.88676 -12.61561 -12.55976 -12.29252 -12.14325 -12.03754 -11.94476 -11.71217 -11.70659 -11.35160 -11.21762 -11.14394 -10.89668 -10.79433 -10.25749 -9.56756 -9.32564 -8.67793 -8.34392 -6.13227 1.25970 1.42518 1.46206 1.56862 1.60592 2.15054 2.27615 2.95776 2.99390 3.26312 3.56638 3.70309 3.74350 3.84097 3.95806 4.01872 4.08755 4.23592 4.27105 4.29105 4.33573 4.39017 4.43392 4.47316 4.54342 4.57695 4.58184 4.68240 4.71504 4.75193 4.77854 4.93310 4.95471 5.05304 5.13193 5.15372 5.18048 5.24755 5.29757 5.38917 5.41258 5.57347 5.64290 6.10840 6.19700 6.35416 6.38216 6.89775 7.06280 7.19090 8.74973 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.002403 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.881732 B =11647.245845 C =13434.812590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 H 0.089 0.911 4 C -0.126 4.126 5 C 0.095 3.905 6 N -0.606 5.606 7 C 0.529 3.471 8 O -0.568 6.568 9 C -0.121 4.121 10 S -0.155 6.155 11 C -0.545 4.545 12 H 0.083 0.917 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.257 1.257 19 C 0.127 3.873 20 C -0.087 4.087 21 H 0.057 0.943 22 C 0.075 3.925 23 N -0.709 5.709 24 C 0.072 3.928 25 C -0.122 4.122 26 C 0.079 3.921 27 O -0.602 6.602 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.271 0.729 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.340 0.660 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 27.953 7.654 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.026 4.026 6 N -0.340 5.340 7 C 0.317 3.683 8 O -0.446 6.446 9 C -0.272 4.272 10 S 0.073 5.927 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.181 1.181 19 C 0.005 3.995 20 C -0.106 4.106 21 H 0.075 0.925 22 C -0.055 4.055 23 N -0.341 5.341 24 C -0.057 4.057 25 C -0.160 4.160 26 C 0.001 3.999 27 O -0.410 6.410 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.158 0.842 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.852 26.177 8.845 30.066 hybrid contribution 0.529 0.738 -1.395 1.665 sum -11.324 26.915 7.450 30.136 Atomic orbital electron populations 1.21977 0.93977 1.02000 1.02856 1.21080 0.96878 0.99354 0.92527 0.89298 1.21946 1.00650 0.94198 0.99574 1.22085 1.01569 0.94290 0.84695 1.48144 1.56762 1.20045 1.09031 1.20147 0.77058 0.81190 0.89930 1.90677 1.54990 1.64439 1.34537 1.23356 1.04525 1.00795 0.98560 1.85629 1.73556 1.20389 1.13151 1.23189 1.43868 1.10159 0.92025 0.89886 1.26166 0.94294 0.95449 1.03389 1.70192 1.37530 1.13885 1.33237 0.84930 0.79163 0.77338 0.76398 1.19241 1.20298 1.18062 1.21666 0.99732 0.92977 0.85121 1.21546 0.99745 0.93749 0.95590 0.92496 1.21961 1.00392 0.95494 0.87612 1.60404 1.14457 1.56897 1.02305 1.21750 1.00562 0.95310 0.88072 1.21472 1.00766 1.00367 0.93386 1.22146 0.97046 0.95747 0.84995 1.86455 1.74649 1.61685 1.18259 0.93101 0.91615 0.91190 0.92567 0.87940 0.89784 0.89193 0.87674 0.87643 0.91995 0.90604 0.91550 0.93291 0.89743 0.84195 0.93703 0.90212 0.92668 0.92461 0.92044 0.92266 0.75185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.11 71.98 0.58 -1.01 16 2 C -0.08 -1.03 2.71 -10.77 -0.03 -1.06 16 3 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.13 -1.88 5.63 30.67 0.17 -1.71 16 5 C 0.10 1.93 5.87 86.36 0.51 2.43 16 6 N -0.61 -17.54 2.97 -818.07 -2.43 -19.96 16 7 C 0.53 21.42 7.72 87.66 0.68 22.10 16 8 O -0.57 -28.50 15.27 -3.01 -0.05 -28.54 16 9 C -0.12 -5.11 4.50 71.24 0.32 -4.79 16 10 S -0.15 -8.91 20.57 -56.49 -1.16 -10.07 16 11 C -0.54 -31.73 9.50 67.95 0.65 -31.08 16 12 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 13 C 0.01 0.67 5.49 84.86 0.47 1.14 16 14 N -0.91 -57.11 13.22 21.65 0.29 -56.82 16 15 Si 1.00 44.15 29.55 68.60 2.03 46.18 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 C 0.13 3.24 5.10 86.51 0.44 3.68 16 20 C -0.09 -1.56 2.27 -10.57 -0.02 -1.58 16 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 22 C 0.07 1.06 4.61 86.30 0.40 1.46 16 23 N -0.71 -12.68 6.09 -513.90 -3.13 -15.81 16 24 C 0.07 1.00 5.68 86.30 0.49 1.49 16 25 C -0.12 -2.09 5.84 30.59 0.18 -1.91 16 26 C 0.08 1.02 7.05 71.98 0.51 1.53 16 27 O -0.60 -9.94 13.66 -148.98 -2.04 -11.98 16 28 H 0.05 0.68 4.96 -2.39 -0.01 0.66 16 29 H 0.06 0.59 6.57 -2.39 -0.02 0.57 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.78 5.93 -2.39 -0.01 1.76 16 34 H 0.09 1.48 6.69 -2.39 -0.02 1.47 16 35 H 0.11 4.02 7.69 -2.39 -0.02 4.00 16 36 H 0.11 4.03 7.94 -2.39 -0.02 4.01 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.08 1.72 6.69 -2.39 -0.02 1.71 16 39 H 0.07 2.22 6.80 -2.39 -0.02 2.20 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 1.09 6.73 -2.39 -0.02 1.08 16 42 H 0.34 6.43 8.73 -89.69 -0.78 5.65 16 43 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.40 2.54 9.12 -74.06 -0.68 1.87 16 Total: -1.00 -81.90 394.41 -1.66 -83.56 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -0.51 Total: 22.76 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 5.33 Total: -9.32 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -5.27 Total: -92.59 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -2.08 Total: -40.52 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -81.90 -1.66 -83.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132688289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.973 kcal (2) G-P(sol) polarization free energy of solvation -81.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds