Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 C 1.53005 * 109.46959 * 305.00242 * 5 2 1 7 7 C 1.53000 * 109.46721 * 179.97438 * 6 5 2 8 8 C 1.52999 * 109.47074 * 60.00298 * 7 6 5 9 9 N 1.46899 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.46962 * 111.00129 * 58.79678 * 9 8 7 11 11 C 1.53048 * 109.36426 * 176.81071 * 10 9 8 12 12 N 1.46963 * 109.36608 * 58.40459 * 11 10 9 13 13 C 1.46899 * 111.00164 * 176.80984 * 12 11 10 14 14 C 1.50697 * 109.47075 * 293.79970 * 13 12 11 15 15 H 1.08003 * 119.99958 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99911 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00023 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47270 * 89.99459 * 18 16 14 20 20 H 1.48502 * 109.47110 * 210.00116 * 18 16 14 21 21 H 1.48508 * 109.46895 * 329.99630 * 18 16 14 22 22 C 1.46961 * 110.87349 * 300.67613 * 12 11 10 23 23 C 1.46954 * 111.00245 * 294.99748 * 9 8 7 24 24 C 1.52996 * 109.46928 * 299.99452 * 8 7 6 25 25 C 1.52996 * 109.47333 * 185.00052 * 5 2 1 26 26 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 27 27 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 28 28 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 29 29 H 1.09002 * 109.47138 * 64.99988 * 5 2 1 30 30 H 1.09002 * 109.46988 * 299.99838 * 6 5 2 31 31 H 1.08998 * 109.47193 * 60.00126 * 6 5 2 32 32 H 1.08992 * 109.47393 * 299.99798 * 7 6 5 33 33 H 1.09001 * 109.46727 * 179.97438 * 7 6 5 34 34 H 1.08992 * 109.47419 * 59.99516 * 8 7 6 35 35 H 1.08998 * 109.48769 * 296.77727 * 10 9 8 36 36 H 1.08998 * 109.49046 * 56.84624 * 10 9 8 37 37 H 1.08997 * 109.48924 * 298.43438 * 11 10 9 38 38 H 1.09005 * 109.48765 * 178.36479 * 11 10 9 39 39 H 1.09002 * 109.46774 * 53.79479 * 13 12 11 40 40 H 1.09002 * 109.47045 * 173.79482 * 13 12 11 41 41 H 0.97003 * 120.00445 * 179.97438 * 17 16 14 42 42 H 1.08990 * 109.49248 * 299.35115 * 22 12 11 43 43 H 1.09007 * 109.48548 * 179.28298 * 22 12 11 44 44 H 1.09005 * 109.48894 * 303.15705 * 23 9 8 45 45 H 1.08997 * 109.48832 * 63.22149 * 23 9 8 46 46 H 1.09003 * 109.47573 * 300.00003 * 24 8 7 47 47 H 1.09002 * 109.47584 * 180.02562 * 24 8 7 48 48 H 1.09004 * 109.46788 * 300.00265 * 25 5 2 49 49 H 1.09002 * 109.47060 * 59.99888 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 6 1.4846 -2.0887 -1.7351 7 6 1.8002 -2.7089 -3.0976 8 6 3.3115 -2.9071 -3.2300 9 7 3.6144 -3.5031 -4.5380 10 6 3.1301 -2.6486 -5.6311 11 6 3.5342 -3.2634 -6.9731 12 7 2.9718 -4.6171 -7.0781 13 6 3.2748 -5.2131 -8.3861 14 6 2.5571 -4.4455 -9.4663 15 1 1.9375 -3.5998 -9.2069 16 6 2.6906 -4.8236 -10.7854 17 7 3.4447 -5.8537 -11.1011 18 14 1.8004 -3.8725 -12.1243 19 1 2.6696 -2.7711 -12.6106 20 1 1.4811 -4.7855 -13.2511 21 1 0.5426 -3.3050 -11.5754 22 6 3.4563 -5.4716 -5.9850 23 6 3.0521 -4.8568 -4.6430 24 6 4.0157 -1.5541 -3.1102 25 6 3.7001 -0.9339 -1.7471 26 1 -0.3633 0.5970 -0.8365 27 1 -0.3633 0.4260 0.9352 28 1 -0.3634 -1.0230 -0.0987 29 1 1.8389 -0.0726 -2.4065 30 1 1.8344 -2.7518 -0.9438 31 1 0.4078 -1.9475 -1.6412 32 1 1.4500 -2.0458 -3.8886 33 1 1.2988 -3.6730 -3.1829 34 1 3.6616 -3.5703 -2.4391 35 1 2.0441 -2.5717 -5.5787 36 1 3.5702 -1.6557 -5.5388 37 1 4.6211 -3.3152 -7.0368 38 1 3.1509 -2.6464 -7.7859 39 1 4.3494 -5.1719 -8.5640 40 1 2.9442 -6.2517 -8.3975 41 1 3.5384 -6.1200 -12.0292 42 1 4.5422 -5.5485 -6.0375 43 1 3.0161 -6.4646 -6.0773 44 1 3.4353 -5.4738 -3.8302 45 1 1.9652 -4.8050 -4.5793 46 1 3.6655 -0.8909 -3.9012 47 1 5.0924 -1.6952 -3.2049 48 1 4.2018 0.0301 -1.6616 49 1 4.0500 -1.5970 -0.9558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169889833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = -65.667557 kcal Electronic energy + Delta-G solvation = -27399.196012 eV Core-core repulsion = 23681.220633 eV Total energy + Delta-G solvation = -3717.975379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.00162 -37.70175 -37.30350 -36.38467 -34.80135 -32.54506 -31.57131 -30.48082 -30.19407 -29.61373 -27.31828 -24.95143 -23.52728 -22.95077 -22.45307 -21.38775 -20.17759 -19.17106 -18.73928 -17.37197 -16.50309 -16.35002 -16.31987 -16.14434 -15.13193 -14.78329 -14.71907 -14.36461 -14.27967 -14.22874 -13.88635 -13.65764 -13.62617 -13.44733 -13.27622 -12.77680 -12.49274 -12.43603 -12.35197 -12.31136 -12.06909 -11.77422 -11.72062 -11.57271 -11.42797 -11.20209 -10.96045 -10.84763 -10.75637 -10.66686 -10.53627 -10.38213 -10.26119 -10.16564 -9.69168 -9.19208 -8.46050 -8.08965 -7.24283 -6.04509 -4.06089 -0.41123 2.31579 3.22038 3.29491 3.35850 3.39516 3.56356 3.94155 4.04659 4.05313 4.34872 4.40201 4.50583 4.63702 4.69817 4.81460 4.89907 4.92754 5.06227 5.13051 5.18629 5.26134 5.31143 5.38051 5.44774 5.47416 5.51764 5.56305 5.67333 5.75213 5.80628 5.87010 5.89242 5.99327 6.08919 6.12990 6.25277 6.43163 6.59031 6.67145 7.17714 7.24338 7.34203 7.36929 7.77955 8.07607 8.19385 8.53589 9.01365 9.58174 11.06371 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.002370 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.497572 B =11809.895581 C =12276.214821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.416 3.584 3 O -0.943 6.943 4 O -0.938 6.938 5 C -0.565 4.565 6 C -0.105 4.105 7 C -0.148 4.148 8 C 0.084 3.916 9 N -0.532 5.532 10 C 0.052 3.948 11 C 0.067 3.933 12 N -0.538 5.538 13 C 0.194 3.806 14 C -0.507 4.507 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.056 3.944 23 C 0.059 3.941 24 C -0.104 4.104 25 C -0.103 4.103 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.085 0.915 39 H -0.009 1.009 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.030 0.970 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 9.817 22.382 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.599 3.401 3 O -0.940 6.940 4 O -0.935 6.935 5 C -0.675 4.675 6 C -0.144 4.144 7 C -0.188 4.188 8 C -0.025 4.025 9 N -0.255 5.255 10 C -0.076 4.076 11 C -0.062 4.062 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.546 4.546 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.073 4.073 23 C -0.069 4.069 24 C -0.143 4.143 25 C -0.142 4.142 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.103 0.897 39 H 0.009 0.991 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.855 10.012 22.885 25.274 hybrid contribution -1.121 0.169 -1.532 1.906 sum -4.976 10.180 21.353 24.173 Atomic orbital electron populations 1.30305 1.26970 1.11769 1.11732 1.08079 0.78367 0.75660 0.77961 1.93597 1.79118 1.34602 1.86662 1.93588 1.78952 1.66860 1.54120 1.30201 1.06038 1.09008 1.22223 1.21437 0.99336 0.93044 1.00567 1.22195 0.98746 1.01610 0.96243 1.21732 0.92575 0.95868 0.92339 1.62398 1.58837 1.02766 1.01521 1.22334 0.98156 0.95986 0.91085 1.21994 0.96969 0.91973 0.95256 1.62290 1.58234 1.01605 1.04231 1.19694 0.94724 0.95281 0.83432 1.21141 1.28520 1.14362 0.90554 0.91988 1.24993 0.95578 0.95293 0.98768 1.69956 1.39141 1.26346 1.18329 0.86513 0.80022 0.79613 0.81339 1.20730 1.21255 1.19828 1.22064 0.97768 0.96767 0.90711 1.22173 0.97615 0.89259 0.97810 1.21534 1.01544 0.95773 0.95436 1.21358 0.89727 1.02640 1.00462 0.85252 0.85345 0.85059 0.84376 0.89762 0.90699 0.90884 0.90811 0.90005 0.94051 0.91006 0.95403 0.89721 0.99107 0.95283 0.92913 0.95192 0.91122 0.91295 0.94049 0.91143 0.90220 0.90176 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.42 10.01 101.05 1.01 -1.40 16 2 S 2.42 16.77 4.90 -107.50 -0.53 16.24 16 3 O -0.94 -10.06 18.10 -57.83 -1.05 -11.10 16 4 O -0.94 -9.72 18.06 -57.83 -1.04 -10.76 16 5 C -0.56 -3.48 2.62 -26.73 -0.07 -3.56 16 6 C -0.10 -0.65 4.91 -26.73 -0.13 -0.78 16 7 C -0.15 -1.30 4.50 -26.73 -0.12 -1.42 16 8 C 0.08 0.85 2.23 -67.72 -0.15 0.70 16 9 N -0.53 -7.15 4.70 -226.50 -1.06 -8.21 16 10 C 0.05 0.76 4.81 -3.77 -0.02 0.75 16 11 C 0.07 1.27 5.43 -3.77 -0.02 1.25 16 12 N -0.54 -11.43 4.70 -235.91 -1.11 -12.54 16 13 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 14 C -0.51 -14.07 8.47 -34.44 -0.29 -14.37 16 15 H 0.06 1.70 7.13 -52.48 -0.37 1.32 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 18 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 23 C 0.06 0.84 5.25 -3.77 -0.02 0.82 16 24 C -0.10 -0.94 5.01 -26.71 -0.13 -1.08 16 25 C -0.10 -0.78 5.20 -26.71 -0.14 -0.92 16 26 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 27 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.13 0.29 6.77 -51.92 -0.35 -0.06 16 29 H 0.14 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.28 6.39 -51.93 -0.33 -0.05 16 32 H 0.07 0.69 6.46 -51.93 -0.34 0.35 16 33 H 0.07 0.69 6.59 -51.93 -0.34 0.35 16 34 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 35 H 0.04 0.61 6.47 -51.93 -0.34 0.28 16 36 H 0.07 0.93 6.18 -51.93 -0.32 0.61 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.73 6.79 -51.93 -0.35 1.38 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.80 8.03 -51.93 -0.42 0.39 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 44 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 45 H 0.04 0.59 6.60 -51.93 -0.34 0.25 16 46 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -35.13 376.61 -12.08 -47.21 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -8.46 Total: -4.47 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.23 Total: -12.57 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -1.44 Total: -46.60 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -2.09 Total: -21.86 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 16.77 SS G_CDS: -0.53 Total: 16.24 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.13 -12.08 -47.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169889833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.456 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds