Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 C 1.53005 * 109.46959 * 305.00242 * 5 2 1 7 7 C 1.53000 * 109.46721 * 179.97438 * 6 5 2 8 8 C 1.52999 * 109.47074 * 60.00298 * 7 6 5 9 9 N 1.46899 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.46962 * 111.00129 * 58.79678 * 9 8 7 11 11 C 1.53048 * 109.36426 * 176.81071 * 10 9 8 12 12 N 1.46963 * 109.36608 * 58.40459 * 11 10 9 13 13 C 1.46899 * 111.00164 * 176.80984 * 12 11 10 14 14 C 1.50697 * 109.47075 * 293.79970 * 13 12 11 15 15 H 1.08003 * 119.99958 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99911 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00023 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47270 * 89.99459 * 18 16 14 20 20 H 1.48502 * 109.47110 * 210.00116 * 18 16 14 21 21 H 1.48508 * 109.46895 * 329.99630 * 18 16 14 22 22 C 1.46961 * 110.87349 * 300.67613 * 12 11 10 23 23 C 1.46954 * 111.00245 * 294.99748 * 9 8 7 24 24 C 1.52996 * 109.46928 * 299.99452 * 8 7 6 25 25 C 1.52996 * 109.47333 * 185.00052 * 5 2 1 26 26 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 27 27 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 28 28 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 29 29 H 1.09002 * 109.47138 * 64.99988 * 5 2 1 30 30 H 1.09002 * 109.46988 * 299.99838 * 6 5 2 31 31 H 1.08998 * 109.47193 * 60.00126 * 6 5 2 32 32 H 1.08992 * 109.47393 * 299.99798 * 7 6 5 33 33 H 1.09001 * 109.46727 * 179.97438 * 7 6 5 34 34 H 1.08992 * 109.47419 * 59.99516 * 8 7 6 35 35 H 1.08998 * 109.48769 * 296.77727 * 10 9 8 36 36 H 1.08998 * 109.49046 * 56.84624 * 10 9 8 37 37 H 1.08997 * 109.48924 * 298.43438 * 11 10 9 38 38 H 1.09005 * 109.48765 * 178.36479 * 11 10 9 39 39 H 1.09002 * 109.46774 * 53.79479 * 13 12 11 40 40 H 1.09002 * 109.47045 * 173.79482 * 13 12 11 41 41 H 0.97003 * 120.00445 * 179.97438 * 17 16 14 42 42 H 1.08990 * 109.49248 * 299.35115 * 22 12 11 43 43 H 1.09007 * 109.48548 * 179.28298 * 22 12 11 44 44 H 1.09005 * 109.48894 * 303.15705 * 23 9 8 45 45 H 1.08997 * 109.48832 * 63.22149 * 23 9 8 46 46 H 1.09003 * 109.47573 * 300.00003 * 24 8 7 47 47 H 1.09002 * 109.47584 * 180.02562 * 24 8 7 48 48 H 1.09004 * 109.46788 * 300.00265 * 25 5 2 49 49 H 1.09002 * 109.47060 * 59.99888 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 6 1.4846 -2.0887 -1.7351 7 6 1.8002 -2.7089 -3.0976 8 6 3.3115 -2.9071 -3.2300 9 7 3.6144 -3.5031 -4.5380 10 6 3.1301 -2.6486 -5.6311 11 6 3.5342 -3.2634 -6.9731 12 7 2.9718 -4.6171 -7.0781 13 6 3.2748 -5.2131 -8.3861 14 6 2.5571 -4.4455 -9.4663 15 1 1.9375 -3.5998 -9.2069 16 6 2.6906 -4.8236 -10.7854 17 7 3.4447 -5.8537 -11.1011 18 14 1.8004 -3.8725 -12.1243 19 1 2.6696 -2.7711 -12.6106 20 1 1.4811 -4.7855 -13.2511 21 1 0.5426 -3.3050 -11.5754 22 6 3.4563 -5.4716 -5.9850 23 6 3.0521 -4.8568 -4.6430 24 6 4.0157 -1.5541 -3.1102 25 6 3.7001 -0.9339 -1.7471 26 1 -0.3633 0.5970 -0.8365 27 1 -0.3633 0.4260 0.9352 28 1 -0.3634 -1.0230 -0.0987 29 1 1.8389 -0.0726 -2.4065 30 1 1.8344 -2.7518 -0.9438 31 1 0.4078 -1.9475 -1.6412 32 1 1.4500 -2.0458 -3.8886 33 1 1.2988 -3.6730 -3.1829 34 1 3.6616 -3.5703 -2.4391 35 1 2.0441 -2.5717 -5.5787 36 1 3.5702 -1.6557 -5.5388 37 1 4.6211 -3.3152 -7.0368 38 1 3.1509 -2.6464 -7.7859 39 1 4.3494 -5.1719 -8.5640 40 1 2.9442 -6.2517 -8.3975 41 1 3.5384 -6.1200 -12.0292 42 1 4.5422 -5.5485 -6.0375 43 1 3.0161 -6.4646 -6.0773 44 1 3.4353 -5.4738 -3.8302 45 1 1.9652 -4.8050 -4.5793 46 1 3.6655 -0.8909 -3.9012 47 1 5.0924 -1.6952 -3.2049 48 1 4.2018 0.0301 -1.6616 49 1 4.0500 -1.5970 -0.9558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169889833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = -93.480783 kcal Electronic energy + Delta-G solvation = -27400.402084 eV Core-core repulsion = 23681.220633 eV Total energy + Delta-G solvation = -3719.181451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96969 -38.84347 -37.97529 -37.02531 -36.13963 -34.50661 -32.26553 -31.71072 -31.22655 -30.09011 -28.95628 -26.48715 -24.71867 -23.97830 -23.45095 -22.78889 -21.19423 -19.88849 -19.70949 -18.49064 -17.95289 -17.35137 -17.03255 -16.86692 -16.53178 -16.02874 -15.85725 -15.54563 -15.40041 -15.28095 -15.03260 -14.65774 -14.59853 -14.06471 -13.93397 -13.82517 -13.61646 -13.43870 -13.31738 -13.14178 -13.01611 -12.89691 -12.84498 -12.68623 -12.52409 -12.43131 -12.33453 -12.24430 -11.98028 -11.92856 -11.77505 -11.52267 -11.34087 -11.18425 -11.15163 -10.82497 -10.62772 -9.18239 -8.99660 -8.21293 -6.31983 -0.89976 1.40835 1.42368 1.53894 1.86983 2.39665 2.73954 2.94658 3.08446 3.11019 3.30936 3.50802 3.57874 3.88558 4.00091 4.11082 4.16451 4.17170 4.22769 4.28079 4.30652 4.37954 4.44432 4.46881 4.49784 4.52570 4.67862 4.74308 4.81331 4.86542 4.92539 4.95645 5.00521 5.03401 5.07713 5.10091 5.17229 5.18451 5.22619 5.29038 5.36124 5.44823 5.63197 6.02317 6.13837 6.19921 6.37571 6.62576 6.84211 7.38000 8.90101 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.002370 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.497572 B =11809.895581 C =12276.214821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.417 3.583 3 O -0.988 6.988 4 O -0.980 6.980 5 C -0.557 4.557 6 C -0.107 4.107 7 C -0.145 4.145 8 C 0.082 3.918 9 N -0.543 5.543 10 C 0.067 3.933 11 C 0.067 3.933 12 N -0.541 5.541 13 C 0.209 3.791 14 C -0.522 4.522 15 H 0.064 0.936 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.262 1.262 22 C 0.053 3.947 23 C 0.070 3.930 24 C -0.101 4.101 25 C -0.108 4.108 26 H 0.153 0.847 27 H 0.137 0.863 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.010 0.990 38 H 0.066 0.934 39 H -0.044 1.044 40 H 0.002 0.998 41 H 0.264 0.736 42 H 0.016 0.984 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 11.308 23.445 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.606 3.394 3 O -0.985 6.985 4 O -0.978 6.978 5 C -0.668 4.668 6 C -0.145 4.145 7 C -0.185 4.185 8 C -0.025 4.025 9 N -0.267 5.267 10 C -0.061 4.061 11 C -0.061 4.061 12 N -0.266 5.266 13 C 0.082 3.918 14 C -0.560 4.560 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.577 5.577 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.186 1.186 22 C -0.076 4.076 23 C -0.058 4.058 24 C -0.140 4.140 25 C -0.147 4.147 26 H 0.171 0.829 27 H 0.156 0.844 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.028 0.972 38 H 0.085 0.915 39 H -0.026 1.026 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.258 11.520 23.996 27.344 hybrid contribution -0.344 -0.347 -1.837 1.901 sum -6.602 11.173 22.159 25.680 Atomic orbital electron populations 1.30155 1.21987 1.13958 1.13434 1.07701 0.80076 0.74096 0.77496 1.93541 1.81176 1.36600 1.87230 1.93534 1.80939 1.67376 1.55914 1.30121 1.04975 1.09556 1.22116 1.21521 1.01456 0.92596 0.98944 1.22137 0.97043 1.01652 0.97709 1.21832 0.94194 0.96252 0.90265 1.62349 1.59167 1.02418 1.02768 1.22150 0.98481 0.96550 0.88900 1.22006 0.95660 0.90714 0.97754 1.62237 1.58606 1.02863 1.02933 1.19345 0.92204 0.94104 0.86122 1.21439 1.28624 1.14539 0.91407 0.91739 1.25960 0.96273 0.96200 1.01408 1.70095 1.40536 1.27989 1.19046 0.85353 0.79023 0.78174 0.77884 1.19820 1.20809 1.18635 1.22175 0.96854 0.96756 0.91780 1.22060 0.98000 0.89944 0.95748 1.21489 1.00933 0.95246 0.96327 1.21375 0.91190 1.02675 0.99451 0.82876 0.84435 0.82798 0.82252 0.89575 0.87405 0.91161 0.91141 0.89479 0.93566 0.88934 0.97211 0.91522 1.02635 0.97957 0.92686 0.96598 0.91319 0.88889 0.93487 0.91073 0.91113 0.89917 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.04 10.01 113.37 1.14 -0.90 16 2 S 2.42 28.91 4.90 -56.49 -0.28 28.64 16 3 O -0.99 -20.26 18.10 -127.37 -2.31 -22.56 16 4 O -0.98 -19.35 18.06 -127.37 -2.30 -21.65 16 5 C -0.56 -5.27 2.62 30.59 0.08 -5.19 16 6 C -0.11 -0.92 4.91 30.60 0.15 -0.77 16 7 C -0.15 -2.08 4.50 30.59 0.14 -1.95 16 8 C 0.08 1.49 2.23 44.91 0.10 1.59 16 9 N -0.54 -13.79 4.70 -870.50 -4.09 -17.88 16 10 C 0.07 1.88 4.81 86.31 0.42 2.30 16 11 C 0.07 2.61 5.43 86.31 0.47 3.08 16 12 N -0.54 -23.62 4.70 -900.27 -4.23 -27.85 16 13 C 0.21 11.36 4.72 85.56 0.40 11.77 16 14 C -0.52 -29.65 8.47 25.60 0.22 -29.44 16 15 H 0.06 3.56 7.13 -2.91 -0.02 3.54 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 17 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 18 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 C 0.05 1.93 5.61 86.31 0.48 2.41 16 23 C 0.07 1.89 5.25 86.31 0.45 2.35 16 24 C -0.10 -1.65 5.01 30.61 0.15 -1.50 16 25 C -0.11 -1.46 5.20 30.61 0.16 -1.30 16 26 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.15 -0.13 6.77 -2.39 -0.02 -0.15 16 29 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 0.25 6.39 -2.39 -0.02 0.24 16 32 H 0.07 1.07 6.46 -2.39 -0.02 1.06 16 33 H 0.07 1.09 6.59 -2.39 -0.02 1.07 16 34 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 35 H 0.05 1.27 6.47 -2.39 -0.02 1.26 16 36 H 0.09 2.22 6.18 -2.39 -0.01 2.21 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.07 2.79 6.79 -2.38 -0.02 2.77 16 39 H -0.04 -2.65 8.12 -2.39 -0.02 -2.67 16 40 H 0.00 0.14 8.03 -2.39 -0.02 0.12 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.02 0.61 8.14 -2.39 -0.02 0.60 16 43 H 0.07 2.48 8.07 -2.38 -0.02 2.46 16 44 H 0.09 2.08 8.12 -2.38 -0.02 2.06 16 45 H 0.05 1.23 6.60 -2.39 -0.02 1.22 16 46 H 0.07 1.14 6.36 -2.39 -0.02 1.13 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 48 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -79.26 376.61 -5.15 -84.41 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 0.92 Total: 4.55 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 4.82 Total: -17.13 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -8.04 Total: -102.29 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -4.61 Total: -44.21 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 28.91 SS G_CDS: -0.28 Total: 28.64 kcal Total: -79.26 -5.15 -84.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169889833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.070 kcal (2) G-P(sol) polarization free energy of solvation -79.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds