Wall clock time and date at job start Tue Mar 31 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47574 * 2 1 4 4 O 1.42901 * 109.47146 * 239.99742 * 2 1 3 5 5 C 1.52998 * 109.47163 * 120.00182 * 2 1 3 6 6 C 1.52997 * 109.47170 * 184.99836 * 5 2 1 7 7 C 1.53008 * 109.47131 * 179.97438 * 6 5 2 8 8 N 1.46904 * 109.47121 * 179.97438 * 7 6 5 9 9 C 1.46891 * 111.00059 * 66.04326 * 8 7 6 10 10 C 1.46900 * 110.99784 * 190.00257 * 8 7 6 11 11 H 1.09000 * 110.88368 * 298.15056 * 10 8 7 12 12 C 1.55158 * 111.00683 * 62.03069 * 10 8 7 13 13 C 1.54317 * 102.94019 * 153.57526 * 12 10 8 14 14 N 1.47022 * 107.27419 * 337.80789 * 13 12 10 15 15 C 1.34777 * 125.64961 * 178.92054 * 14 13 12 16 16 O 1.21283 * 120.00341 * 180.02562 * 15 14 13 17 17 C 1.50709 * 119.99959 * 0.02562 * 15 14 13 18 18 S 1.80997 * 109.47010 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00086 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99997 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00390 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99514 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00003 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47361 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46996 * 120.00525 * 23 21 19 26 26 H 1.48498 * 109.47066 * 239.99982 * 23 21 19 27 27 C 1.47423 * 108.70468 * 358.94121 * 14 13 12 28 28 H 1.08999 * 109.47091 * 59.99388 * 1 2 3 29 29 H 1.08989 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46618 * 300.00167 * 1 2 3 31 31 H 0.96706 * 113.99826 * 60.00527 * 4 2 1 32 32 H 1.09003 * 109.47290 * 304.99743 * 5 2 1 33 33 H 1.08998 * 109.47277 * 64.99691 * 5 2 1 34 34 H 1.08996 * 109.47176 * 299.99772 * 6 5 2 35 35 H 1.09001 * 109.47753 * 60.00189 * 6 5 2 36 36 H 1.08996 * 109.47012 * 300.00004 * 7 6 5 37 37 H 1.08997 * 109.46682 * 60.00076 * 7 6 5 38 38 H 1.09004 * 109.47329 * 55.09754 * 9 8 7 39 39 H 1.08996 * 109.47365 * 175.09385 * 9 8 7 40 40 H 1.08996 * 109.47575 * 295.09613 * 9 8 7 41 41 H 1.08998 * 110.71967 * 271.94215 * 12 10 8 42 42 H 1.09003 * 110.71776 * 35.03621 * 12 10 8 43 43 H 1.08998 * 109.88231 * 97.22881 * 13 12 10 44 44 H 1.09002 * 109.88162 * 218.23705 * 13 12 10 45 45 H 1.08998 * 109.46619 * 300.00262 * 17 15 14 46 46 H 1.08994 * 109.46813 * 60.00451 * 17 15 14 47 47 H 0.97003 * 119.99493 * 179.97438 * 22 21 19 48 48 H 1.09000 * 110.36548 * 265.29522 * 27 14 13 49 49 H 1.08992 * 110.36916 * 142.96439 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6134 1.3136 7 6 4.0748 -1.3341 2.5632 8 7 5.5389 -1.2310 2.6248 9 6 5.9605 0.1613 2.8279 10 6 6.0845 -2.1046 3.6722 11 1 5.7124 -1.8128 4.6543 12 6 5.7655 -3.5939 3.3765 13 6 6.9087 -4.3414 4.0946 14 7 8.0209 -3.3926 4.2500 15 6 9.1994 -3.6549 4.8489 16 8 10.0486 -2.7920 4.9206 17 6 9.4620 -5.0206 5.4295 18 16 11.1182 -5.0579 6.1587 19 6 11.1573 -6.7191 6.7446 20 1 10.3040 -7.3644 6.5960 21 6 12.2850 -7.1990 7.3961 22 7 13.3252 -6.4127 7.5768 23 14 12.3266 -8.9604 8.0166 24 1 11.0425 -9.6307 7.6901 25 1 13.4445 -9.6887 7.3644 26 1 12.5265 -8.9623 9.4881 27 6 7.6334 -2.1064 3.6426 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7210 -0.2701 -1.9980 32 1 1.6054 -0.2618 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9994 -1.0729 0.4259 35 1 3.8533 0.4369 1.3573 36 1 3.6402 -0.8742 3.4507 37 1 3.7863 -2.3844 2.5199 38 1 5.4748 0.5620 3.7177 39 1 7.0422 0.1984 2.9568 40 1 5.6774 0.7570 1.9601 41 1 4.7990 -3.8720 3.7966 42 1 5.7883 -3.7875 2.3040 43 1 6.5717 -4.6812 5.0740 44 1 7.2272 -5.1947 3.4959 45 1 8.7214 -5.2365 6.1996 46 1 9.3951 -5.7698 4.6407 47 1 14.1132 -6.7480 8.0324 48 1 7.9931 -2.0484 2.6153 49 1 8.0250 -1.2761 4.2301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188958775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:03 Heat of formation + Delta-G solvation = -90.977943 kcal Electronic energy + Delta-G solvation = -25583.710811 eV Core-core repulsion = 21864.637891 eV Total energy + Delta-G solvation = -3719.072920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.02289 -38.59784 -37.94095 -36.14994 -33.71773 -32.41235 -31.38211 -30.69087 -29.63426 -27.88827 -27.20923 -25.50245 -24.86143 -22.81744 -21.89242 -21.22590 -20.30859 -19.26612 -17.95146 -17.70790 -16.90399 -16.56119 -15.66016 -15.44671 -15.21820 -15.12160 -14.78891 -14.49124 -14.40372 -14.34951 -13.93775 -13.74385 -13.33090 -13.17829 -12.92067 -12.77622 -12.58209 -12.48344 -12.42807 -12.23536 -11.98683 -11.77619 -11.71318 -11.45643 -11.23681 -11.06897 -11.04482 -10.99427 -10.85533 -10.76905 -10.71973 -10.43887 -9.78828 -9.38218 -9.05688 -8.66785 -8.45451 -8.20645 -6.48131 -6.20032 -3.90383 2.87961 3.09642 3.22817 3.26292 3.32073 3.51548 3.72982 3.79505 4.18164 4.22537 4.34208 4.48161 4.50653 4.61039 4.70055 4.84783 4.89472 5.01914 5.07364 5.12433 5.13315 5.15146 5.16749 5.20980 5.27034 5.33834 5.35922 5.44519 5.52453 5.53285 5.58689 5.64366 5.67415 5.70208 5.77989 5.82686 5.87607 5.91868 5.99038 6.06884 6.17109 6.43009 6.73877 6.79607 7.20210 7.61613 7.71064 8.37269 8.59072 9.25347 10.87510 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.033007 B = 0.001743 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.091553 B =16060.426143 C =16620.019259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.101 3.899 3 H 0.053 0.947 4 O -0.565 6.565 5 C -0.113 4.113 6 C -0.113 4.113 7 C 0.054 3.946 8 N -0.530 5.530 9 C 0.019 3.981 10 C 0.068 3.932 11 H 0.058 0.942 12 C -0.122 4.122 13 C 0.104 3.896 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.516 6.516 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.119 3.881 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.376 0.624 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.075 0.925 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.614 12.819 -14.454 33.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.042 3.958 3 H 0.071 0.929 4 O -0.370 6.370 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.073 4.073 8 N -0.254 5.254 9 C -0.129 4.129 10 C -0.042 4.042 11 H 0.076 0.924 12 C -0.161 4.161 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.390 6.390 17 C -0.296 4.296 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.005 4.005 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.223 0.777 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.612 13.551 -14.215 32.275 hybrid contribution -1.691 -1.454 0.724 2.345 sum -27.303 12.097 -13.492 32.769 Atomic orbital electron populations 1.22532 0.96672 1.02897 1.02410 1.21798 0.92439 0.95272 0.86305 0.92861 1.86568 1.77012 1.57574 1.15875 1.21590 0.96235 1.01619 0.95627 1.21534 0.94251 1.00591 0.98659 1.22181 0.86742 1.01281 0.97130 1.61968 1.09956 1.07711 1.45800 1.22479 1.01521 0.88637 1.00309 1.22795 0.94883 0.93266 0.93223 0.92448 1.22703 0.97841 0.93425 1.02090 1.21974 0.86513 0.92921 1.00599 1.48423 1.15505 1.13189 1.59251 1.20024 0.79591 0.89920 0.76710 1.90707 1.43556 1.47867 1.56919 1.23501 1.07302 0.95483 1.03363 1.85398 1.08504 1.17438 1.72141 1.22907 1.04488 0.97491 1.43371 0.90871 1.24993 0.94612 0.98669 0.95317 1.70034 1.04590 1.35708 1.39945 0.86112 0.78231 0.82637 0.78486 1.19620 1.20560 1.20578 1.22073 0.92462 0.86962 0.98974 0.92424 0.91727 0.91611 0.77742 0.90871 0.91024 0.90160 0.92186 0.94998 0.90462 0.95530 0.90928 0.90992 0.90333 0.89335 0.91320 0.90994 0.89325 0.89245 0.92252 0.90630 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.76 9.53 37.16 0.35 -0.41 16 2 C 0.10 0.53 3.58 -26.73 -0.10 0.44 16 3 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 4 O -0.56 -3.70 12.85 -35.23 -0.45 -4.15 16 5 C -0.11 -0.65 4.92 -26.73 -0.13 -0.78 16 6 C -0.11 -0.78 5.03 -26.73 -0.13 -0.91 16 7 C 0.05 0.40 4.84 -3.82 -0.02 0.38 16 8 N -0.53 -4.76 4.66 -232.30 -1.08 -5.85 16 9 C 0.02 0.15 9.13 60.06 0.55 0.70 16 10 C 0.07 0.68 2.71 -65.56 -0.18 0.50 16 11 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 12 C -0.12 -1.10 5.34 -24.90 -0.13 -1.23 16 13 C 0.10 1.18 6.49 -3.07 -0.02 1.16 16 14 N -0.63 -9.59 3.33 -170.52 -0.57 -10.16 16 15 C 0.55 11.06 7.87 -10.98 -0.09 10.97 16 16 O -0.52 -12.40 16.12 5.55 0.09 -12.31 16 17 C -0.15 -3.09 5.35 36.01 0.19 -2.89 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 20 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 23 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.12 1.56 5.33 -2.53 -0.01 1.54 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.30 8.14 -51.94 -0.42 -0.12 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.38 1.01 9.08 45.56 0.41 1.42 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.71 7.82 -51.93 -0.41 0.30 16 35 H 0.06 0.40 6.66 -51.93 -0.35 0.06 16 36 H 0.03 0.23 8.08 -51.93 -0.42 -0.19 16 37 H 0.08 0.56 6.76 -51.93 -0.35 0.21 16 38 H 0.03 0.21 8.08 -51.93 -0.42 -0.21 16 39 H 0.07 0.65 6.74 -51.93 -0.35 0.30 16 40 H 0.07 0.52 6.71 -51.93 -0.35 0.18 16 41 H 0.08 0.56 7.88 -51.93 -0.41 0.15 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 46 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -35.57 404.20 -10.02 -45.59 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -8.08 Total: -2.55 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 0.48 Total: -3.64 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.92 Total: -41.68 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.36 Total: -16.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.57 -10.02 -45.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.389 kcal (2) G-P(sol) polarization free energy of solvation -35.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds