Wall clock time and date at job start Tue Mar 31 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 C 1.52994 * 109.47501 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47501 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47203 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47113 * 179.97438 * 6 5 4 8 8 C 1.48555 * 111.00280 * 290.13002 * 7 6 5 9 9 C 1.54383 * 104.59982 * 200.95673 * 8 7 6 10 10 H 1.09003 * 110.32489 * 142.74559 * 9 8 7 11 11 O 1.42900 * 110.41197 * 264.91379 * 9 8 7 12 12 C 1.54260 * 105.05506 * 23.85428 * 9 8 7 13 13 H 1.09002 * 110.32147 * 241.00426 * 12 9 8 14 14 N 1.46499 * 110.32595 * 118.89630 * 12 9 8 15 15 C 1.34778 * 120.00278 * 154.99492 * 14 12 9 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31630 * 119.99849 * 180.27695 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 0.28024 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99557 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00077 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99899 * 23 21 19 27 27 C 1.48564 * 111.00199 * 174.71150 * 7 6 5 28 28 H 1.08997 * 109.47413 * 59.99864 * 1 2 3 29 29 H 1.09005 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46939 * 299.99855 * 1 2 3 31 31 H 1.09001 * 109.46980 * 240.00670 * 2 1 3 32 32 H 1.08998 * 109.47928 * 120.00191 * 2 1 3 33 33 H 1.09005 * 109.47055 * 60.00216 * 3 2 1 34 34 H 1.09003 * 109.47441 * 300.00482 * 3 2 1 35 35 H 1.09005 * 109.47162 * 59.99825 * 4 3 2 36 36 H 1.08998 * 109.47407 * 300.00054 * 4 3 2 37 37 H 1.09005 * 109.47055 * 59.99760 * 5 4 3 38 38 H 1.08997 * 109.47047 * 299.99904 * 5 4 3 39 39 H 1.09001 * 109.46980 * 60.00670 * 6 5 4 40 40 H 1.08997 * 109.47413 * 300.00136 * 6 5 4 41 41 H 1.09006 * 110.41511 * 82.17718 * 8 7 6 42 42 H 1.09006 * 110.41392 * 319.73768 * 8 7 6 43 43 H 0.96696 * 113.99952 * 295.68694 * 11 9 8 44 44 H 0.97000 * 119.99972 * 334.99848 * 14 12 9 45 45 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 46 46 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 47 47 H 0.97005 * 119.99878 * 180.02562 * 22 21 19 48 48 H 1.08993 * 110.41151 * 40.26222 * 27 7 6 49 49 H 1.08998 * 110.40708 * 277.81952 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 7 6.0996 4.2701 0.0000 8 6 5.8271 4.9312 -1.3021 9 6 6.8251 6.1077 -1.3576 10 1 7.1955 6.2423 -2.3739 11 8 6.2060 7.3088 -0.8927 12 6 7.9777 5.7001 -0.4169 13 1 8.0711 6.4163 0.3996 14 7 9.2359 5.6123 -1.1621 15 6 10.4110 5.7729 -0.5219 16 8 10.4268 5.9897 0.6713 17 6 11.7053 5.6831 -1.2885 18 16 13.0952 5.9399 -0.1580 19 6 14.4398 5.7858 -1.2864 20 1 14.2483 5.5898 -2.3311 21 6 15.7448 5.9226 -0.8337 22 7 16.7490 5.8129 -1.6776 23 14 16.0759 6.2622 0.9730 24 1 16.2218 4.9755 1.6999 25 1 17.3268 7.0512 1.1072 26 1 14.9423 7.0299 1.5483 27 6 7.5791 4.3117 0.1278 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9289 -0.8909 36 1 3.9337 0.9286 0.8891 37 1 3.7169 3.3984 0.8905 38 1 3.7163 3.3994 -0.8895 39 1 5.9732 2.3717 -0.8903 40 1 5.9733 2.3709 0.8897 41 1 4.8020 5.3004 -1.3339 42 1 6.0085 4.2396 -2.1250 43 1 5.4734 7.6132 -1.4457 44 1 9.2233 5.4386 -2.1163 45 1 11.7216 6.4481 -2.0647 46 1 11.7880 4.6979 -1.7476 47 1 17.6610 5.9081 -1.3612 48 1 8.0347 3.5233 -0.4711 49 1 7.8732 4.2146 1.1729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191149597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:01 Heat of formation + Delta-G solvation = -105.115032 kcal Electronic energy + Delta-G solvation = -25372.908375 eV Core-core repulsion = 21653.222425 eV Total energy + Delta-G solvation = -3719.685950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.29370 -38.71554 -37.08882 -36.01136 -34.58749 -32.98287 -32.44693 -30.57023 -29.23627 -28.34407 -27.03921 -25.61137 -24.13810 -22.13258 -21.58251 -21.25063 -20.88027 -20.46671 -17.96633 -17.50406 -16.72965 -16.59825 -16.27337 -15.71831 -15.34975 -15.11231 -14.91170 -14.80043 -14.46565 -14.23844 -13.84381 -13.78664 -13.47940 -13.31238 -13.08910 -12.81034 -12.74221 -12.69103 -12.47715 -12.22567 -11.89335 -11.82055 -11.65287 -11.31587 -11.27396 -11.08491 -11.04587 -11.01264 -10.84707 -10.82996 -10.61542 -10.36716 -9.86464 -9.57845 -9.14183 -9.00617 -8.81302 -8.51268 -6.92972 -6.29849 -4.01763 2.67812 2.90625 3.16606 3.32914 3.50650 3.54500 3.68811 3.92367 4.21142 4.31888 4.33683 4.40785 4.46057 4.61028 4.66641 4.72137 4.72890 4.88322 4.97118 5.00710 5.05163 5.09356 5.12765 5.20882 5.24826 5.26976 5.31412 5.34526 5.39592 5.43480 5.53592 5.58478 5.65919 5.69622 5.71596 5.74762 5.83629 5.90705 5.93638 5.97980 5.99796 6.28829 6.57514 6.65897 7.35362 7.51690 7.93089 8.40282 8.43323 9.16377 10.79327 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.001811 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.143127 B =15453.222388 C =16096.987310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.113 4.113 6 C 0.043 3.957 7 N -0.502 5.502 8 C 0.002 3.998 9 C 0.096 3.904 10 H 0.069 0.931 11 O -0.549 6.549 12 C 0.149 3.851 13 H 0.114 0.886 14 N -0.731 5.731 15 C 0.533 3.467 16 O -0.512 6.512 17 C -0.124 4.124 18 S -0.139 6.139 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.025 3.975 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.378 0.622 44 H 0.398 0.602 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.271 0.729 48 H 0.053 0.947 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.667 -7.633 -1.947 32.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.085 4.085 7 N -0.226 5.226 8 C -0.126 4.126 9 C 0.035 3.965 10 H 0.087 0.913 11 O -0.354 6.354 12 C 0.043 3.957 13 H 0.132 0.868 14 N -0.386 5.386 15 C 0.319 3.681 16 O -0.386 6.386 17 C -0.275 4.275 18 S 0.087 5.913 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.104 4.104 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.226 0.774 44 H 0.233 0.767 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -31.244 -7.052 0.945 32.044 hybrid contribution 0.376 -0.746 -2.450 2.588 sum -30.867 -7.798 -1.505 31.873 Atomic orbital electron populations 1.21781 0.95950 1.01562 1.01794 1.21546 0.95825 0.97013 1.01998 1.21607 0.95275 0.96688 1.02093 1.21581 0.95472 0.96649 1.02116 1.21542 0.94197 0.96640 1.02699 1.22346 0.95926 0.89041 1.01233 1.65396 1.11298 1.15949 1.30002 1.23884 1.00592 0.96591 0.91566 1.22714 0.92385 0.84693 0.96671 0.91283 1.86605 1.52026 1.41159 1.55634 1.21427 0.82008 0.97178 0.95109 0.86832 1.46009 1.05012 1.75558 1.12041 1.20316 0.84488 0.75276 0.87987 1.90715 1.86910 1.46106 1.14858 1.23280 0.95266 1.05784 1.03149 1.84819 0.97361 1.94392 1.14754 1.22318 0.91146 1.56736 0.96804 0.89404 1.24707 0.94905 0.93326 0.98302 1.69939 0.99175 1.47656 1.34907 0.86740 0.80007 0.80164 0.84981 1.19203 1.19906 1.15875 1.23560 0.87552 0.96386 1.02919 0.92809 0.92845 0.92748 0.92136 0.92037 0.91916 0.92130 0.92162 0.91837 0.90993 0.92200 0.94588 0.90442 0.89320 0.92936 0.77414 0.76729 0.88377 0.88474 0.91932 0.92919 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.13 -0.66 5.93 -26.73 -0.16 -0.82 16 3 C -0.12 -0.65 5.21 -26.73 -0.14 -0.79 16 4 C -0.12 -0.70 5.21 -26.73 -0.14 -0.84 16 5 C -0.11 -0.76 5.27 -26.73 -0.14 -0.90 16 6 C 0.04 0.35 4.81 -3.83 -0.02 0.33 16 7 N -0.50 -4.88 5.37 -229.97 -1.24 -6.12 16 8 C 0.00 0.02 5.48 -2.18 -0.01 0.01 16 9 C 0.10 0.86 4.18 -25.35 -0.11 0.76 16 10 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 11 O -0.55 -5.39 13.27 -35.23 -0.47 -5.86 16 12 C 0.15 1.82 3.22 -66.55 -0.21 1.61 16 13 H 0.11 1.78 7.40 -51.93 -0.38 1.39 16 14 N -0.73 -9.24 5.06 -52.47 -0.27 -9.51 16 15 C 0.53 9.38 7.85 -10.99 -0.09 9.30 16 16 O -0.51 -11.06 15.51 5.56 0.09 -10.97 16 17 C -0.12 -2.37 6.16 36.00 0.22 -2.14 16 18 S -0.14 -3.53 18.54 -107.50 -1.99 -5.52 16 19 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 20 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.51 13.97 55.49 0.78 -25.74 16 23 Si 0.86 21.80 27.74 -169.99 -4.72 17.08 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.23 -5.98 6.73 56.52 0.38 -5.60 16 27 C 0.02 0.28 6.20 -2.18 -0.01 0.27 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.39 7.25 -51.93 -0.38 0.01 16 39 H 0.04 0.28 7.88 -51.93 -0.41 -0.13 16 40 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 41 H 0.09 0.59 7.70 -51.93 -0.40 0.19 16 42 H 0.05 0.36 7.82 -51.93 -0.41 -0.05 16 43 H 0.38 1.86 9.12 45.56 0.42 2.27 16 44 H 0.40 3.76 8.36 -40.82 -0.34 3.42 16 45 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 46 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.05 0.58 7.91 -51.93 -0.41 0.17 16 49 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 406.82 15.07 6.13 6.13 Total: -1.00 -34.64 406.82 -10.11 -44.75 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.21 Total: 1.33 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.22 Total: -5.58 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.73 Total: -41.36 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.38 Total: -16.83 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.64 -10.11 -44.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191149597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.364 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds