Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47032 * 125.64719 * 359.69263 * 9 7 2 11 11 C 1.54327 * 107.26586 * 178.85180 * 10 9 7 12 12 H 1.08999 * 110.67460 * 96.51874 * 11 10 9 13 13 O 1.42897 * 110.84974 * 219.67324 * 11 10 9 14 14 C 1.55165 * 103.02096 * 338.13514 * 11 10 9 15 15 H 1.08993 * 111.00445 * 277.23353 * 14 11 10 16 16 N 1.46497 * 111.03593 * 153.39728 * 14 11 10 17 17 C 1.34777 * 119.99939 * 161.33424 * 16 14 11 18 18 O 1.21277 * 120.00194 * 359.97438 * 17 16 14 19 19 C 1.50700 * 119.99882 * 180.02562 * 17 16 14 20 20 C 1.50707 * 109.47198 * 179.97438 * 19 17 16 21 21 C 1.30995 * 120.00096 * 124.99861 * 20 19 17 22 22 C 1.50702 * 120.00009 * 180.02562 * 21 20 19 23 23 C 1.50694 * 109.47120 * 124.99984 * 22 21 20 24 24 C 1.38241 * 119.99973 * 269.72631 * 23 22 21 25 25 C 1.38237 * 119.99570 * 179.74881 * 24 23 22 26 26 C 1.38237 * 120.00473 * 0.54363 * 25 24 23 27 27 C 1.38237 * 119.99528 * 359.71043 * 26 25 24 28 28 C 1.38230 * 120.00440 * 0.02562 * 27 26 25 29 29 C 1.47428 * 125.65100 * 179.97438 * 9 7 2 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.87698 * 298.39404 * 10 9 7 32 32 H 1.08994 * 109.88039 * 59.55472 * 10 9 7 33 33 H 0.96705 * 114.00199 * 293.68855 * 13 11 10 34 34 H 0.97008 * 120.00304 * 341.33325 * 16 14 11 35 35 H 1.09004 * 109.47529 * 299.99869 * 19 17 16 36 36 H 1.09003 * 109.47639 * 60.00005 * 19 17 16 37 37 H 1.08001 * 119.99562 * 305.00169 * 20 19 17 38 38 H 1.08001 * 120.00069 * 359.97438 * 21 20 19 39 39 H 1.09004 * 109.46864 * 244.99915 * 22 21 20 40 40 H 1.08993 * 109.46910 * 5.00120 * 22 21 20 41 41 H 1.07996 * 119.99849 * 359.97438 * 24 23 22 42 42 H 1.08001 * 119.99440 * 180.27812 * 25 24 23 43 43 H 1.07994 * 120.00492 * 179.72652 * 26 25 24 44 44 H 1.08002 * 119.99735 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.00405 * 179.97438 * 28 27 26 46 46 H 1.08997 * 110.36556 * 322.92731 * 29 9 7 47 47 H 1.08991 * 110.36533 * 85.14032 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4486 -4.0440 -0.0255 12 1 -0.6332 -4.4203 0.9807 13 8 -1.5632 -4.3160 -0.8774 14 6 0.8516 -4.6562 -0.6105 15 1 0.8563 -4.5966 -1.6988 16 7 1.0294 -6.0396 -0.1624 17 6 1.8616 -6.8627 -0.8306 18 8 2.4629 -6.4583 -1.8031 19 6 2.0440 -8.2859 -0.3700 20 6 3.0181 -8.9878 -1.2810 21 6 4.0792 -9.5707 -0.7808 22 6 5.0536 -10.2720 -1.6918 23 6 6.4367 -9.7157 -1.4717 24 6 6.8761 -8.6398 -2.2203 25 6 8.1429 -8.1262 -2.0148 26 6 8.9746 -8.6956 -1.0687 27 6 8.5371 -9.7749 -0.3239 28 6 7.2683 -10.2850 -0.5255 29 6 1.9334 -3.7312 0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5506 -2.0863 0.9111 32 1 -0.5613 -2.0502 -0.8743 33 1 -2.4009 -3.9547 -0.5567 34 1 0.5482 -6.3633 0.6152 35 1 2.4306 -8.2914 0.6492 36 1 1.0846 -8.8026 -0.3974 37 1 2.8412 -9.0102 -2.3461 38 1 4.2563 -9.5479 0.2844 39 1 5.0522 -11.3398 -1.4722 40 1 4.7592 -10.1140 -2.7292 41 1 6.2282 -8.1982 -2.9630 42 1 8.4845 -7.2827 -2.5964 43 1 9.9659 -8.2972 -0.9112 44 1 9.1870 -10.2200 0.4150 45 1 6.9267 -11.1285 0.0561 46 1 2.8325 -3.7407 -0.6155 47 1 2.1686 -4.0411 1.0187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193884099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = -23.104455 kcal Electronic energy + Delta-G solvation = -27013.559534 eV Core-core repulsion = 23161.985878 eV Total energy + Delta-G solvation = -3851.573656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.73189 -39.41470 -37.88880 -35.73633 -35.06128 -33.99142 -32.58648 -31.65998 -31.03340 -29.32696 -28.19389 -26.98950 -25.35607 -24.21097 -22.73088 -21.57785 -20.77279 -20.44435 -20.02111 -19.58484 -17.29369 -16.99856 -16.94369 -16.43111 -15.83590 -15.43393 -15.36217 -15.18202 -14.77169 -14.28059 -14.07997 -13.80525 -13.62238 -13.57036 -13.32040 -13.12168 -12.79751 -12.67071 -12.47434 -12.10870 -12.01695 -11.93663 -11.47399 -11.39652 -11.25034 -11.21652 -11.09604 -10.88953 -10.79263 -10.19025 -9.90017 -9.83386 -9.81563 -9.36188 -9.13164 -9.06765 -8.83323 -8.79874 -8.61900 -6.91051 -5.75874 -3.10280 1.17571 1.25331 2.07582 2.85567 3.39307 3.42417 3.44527 3.47101 3.63529 4.44372 4.57170 4.62222 4.68777 4.70130 4.85249 4.86963 4.97336 5.06321 5.15341 5.20236 5.29877 5.35714 5.38311 5.44381 5.51675 5.57674 5.59225 5.66178 5.68765 5.83027 5.88050 5.89856 6.09427 6.14973 6.29673 6.37209 6.43896 6.52138 6.55688 6.64324 6.67135 6.86266 6.90996 7.32081 7.46594 7.70114 7.76090 8.10501 8.18001 8.46137 9.15652 9.75669 10.38904 11.35937 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.002481 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.825200 B =11283.790938 C =13286.761813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.916 3.084 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.140 3.860 15 H 0.101 0.899 16 N -0.718 5.718 17 C 0.514 3.486 18 O -0.535 6.535 19 C -0.112 4.112 20 C -0.126 4.126 21 C -0.155 4.155 22 C -0.050 4.050 23 C -0.077 4.077 24 C -0.110 4.110 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.120 4.120 29 C 0.131 3.869 30 H 0.254 0.746 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.376 0.624 34 H 0.397 0.603 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.050 0.950 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 -22.976 1.278 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.035 3.965 15 H 0.119 0.881 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.411 6.411 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.173 4.173 22 C -0.087 4.087 23 C -0.077 4.077 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.140 4.140 28 C -0.138 4.138 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.223 0.777 34 H 0.230 0.770 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.068 0.932 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.945 -22.738 0.205 24.087 hybrid contribution -0.248 1.182 0.892 1.501 sum 7.697 -21.556 1.097 22.915 Atomic orbital electron populations 1.69916 1.04932 1.25314 1.57095 1.24816 0.95788 0.97777 1.02009 0.86138 0.78438 0.82845 0.78002 1.21548 1.21101 1.21022 1.19050 0.90539 0.82104 1.43971 0.90208 1.44243 1.01196 0.99918 1.87435 1.21819 0.85442 0.87793 1.02131 1.23453 0.85529 0.98611 0.91569 0.92517 1.86465 1.18765 1.79971 1.51638 1.22209 0.94383 0.79239 1.00717 0.88098 1.45965 1.46240 1.12301 1.32363 1.20494 0.78987 0.87237 0.83329 1.90717 1.46511 1.77069 1.26813 1.20764 1.01176 0.92916 1.00334 1.22420 0.95439 0.96830 0.99709 1.22635 0.94876 1.00393 0.99424 1.19666 0.90343 0.99169 0.99480 1.19805 0.95312 0.96206 0.96347 1.21146 0.96051 0.95899 0.99724 1.21199 0.94283 0.99738 0.98303 1.21155 0.99841 0.96751 0.96706 1.21119 0.96210 0.96977 0.99690 1.21029 0.94124 1.00355 0.98250 1.21835 0.94962 0.85678 0.97212 0.93608 0.93356 0.92076 0.77676 0.76976 0.88641 0.88078 0.86607 0.87311 0.90229 0.90438 0.85849 0.86014 0.86263 0.86256 0.86214 0.93163 0.95987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.98 10.31 55.49 0.57 -26.41 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.59 3.39 -170.08 -0.58 -16.17 16 10 C 0.15 3.67 5.16 -3.06 -0.02 3.65 16 11 C 0.07 1.26 3.95 -24.89 -0.10 1.16 16 12 H 0.06 0.91 7.99 -51.93 -0.42 0.49 16 13 O -0.56 -9.68 13.39 -35.23 -0.47 -10.15 16 14 C 0.14 2.67 3.04 -65.79 -0.20 2.46 16 15 H 0.10 2.23 7.73 -51.93 -0.40 1.83 16 16 N -0.72 -10.53 5.23 -51.74 -0.27 -10.80 16 17 C 0.51 7.70 7.82 -10.99 -0.09 7.61 16 18 O -0.53 -10.42 15.78 5.56 0.09 -10.33 16 19 C -0.11 -1.13 6.14 -29.03 -0.18 -1.31 16 20 C -0.13 -1.34 8.36 -36.02 -0.30 -1.64 16 21 C -0.16 -1.49 9.10 -36.02 -0.33 -1.81 16 22 C -0.05 -0.43 5.79 -29.04 -0.17 -0.60 16 23 C -0.08 -0.78 5.12 -104.62 -0.54 -1.31 16 24 C -0.11 -1.22 9.70 -39.58 -0.38 -1.60 16 25 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 28 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 29 C 0.13 2.86 6.92 -2.54 -0.02 2.84 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.05 1.24 7.52 -51.93 -0.39 0.85 16 32 H 0.06 1.65 7.28 -51.93 -0.38 1.27 16 33 H 0.38 4.87 9.12 45.56 0.42 5.28 16 34 H 0.40 4.47 8.52 -40.82 -0.35 4.12 16 35 H 0.10 0.79 7.79 -51.93 -0.40 0.39 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 1.31 7.84 -52.49 -0.41 0.90 16 38 H 0.11 0.97 7.84 -52.49 -0.41 0.56 16 39 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -34.74 394.00 -10.38 -45.12 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.49 Total: 9.23 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -4.14 Total: -3.68 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.28 Total: -53.38 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.38 Total: -20.49 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.74 -10.38 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193884099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.020 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds