Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47032 * 125.64719 * 359.69263 * 9 7 2 11 11 C 1.54327 * 107.26586 * 178.85180 * 10 9 7 12 12 H 1.08999 * 110.67460 * 96.51874 * 11 10 9 13 13 O 1.42897 * 110.84974 * 219.67324 * 11 10 9 14 14 C 1.55165 * 103.02096 * 338.13514 * 11 10 9 15 15 H 1.08993 * 111.00445 * 277.23353 * 14 11 10 16 16 N 1.46497 * 111.03593 * 153.39728 * 14 11 10 17 17 C 1.34777 * 119.99939 * 161.33424 * 16 14 11 18 18 O 1.21277 * 120.00194 * 359.97438 * 17 16 14 19 19 C 1.50700 * 119.99882 * 180.02562 * 17 16 14 20 20 C 1.50707 * 109.47198 * 179.97438 * 19 17 16 21 21 C 1.30995 * 120.00096 * 124.99861 * 20 19 17 22 22 C 1.50702 * 120.00009 * 180.02562 * 21 20 19 23 23 C 1.50694 * 109.47120 * 124.99984 * 22 21 20 24 24 C 1.38241 * 119.99973 * 269.72631 * 23 22 21 25 25 C 1.38237 * 119.99570 * 179.74881 * 24 23 22 26 26 C 1.38237 * 120.00473 * 0.54363 * 25 24 23 27 27 C 1.38237 * 119.99528 * 359.71043 * 26 25 24 28 28 C 1.38230 * 120.00440 * 0.02562 * 27 26 25 29 29 C 1.47428 * 125.65100 * 179.97438 * 9 7 2 30 30 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.87698 * 298.39404 * 10 9 7 32 32 H 1.08994 * 109.88039 * 59.55472 * 10 9 7 33 33 H 0.96705 * 114.00199 * 293.68855 * 13 11 10 34 34 H 0.97008 * 120.00304 * 341.33325 * 16 14 11 35 35 H 1.09004 * 109.47529 * 299.99869 * 19 17 16 36 36 H 1.09003 * 109.47639 * 60.00005 * 19 17 16 37 37 H 1.08001 * 119.99562 * 305.00169 * 20 19 17 38 38 H 1.08001 * 120.00069 * 359.97438 * 21 20 19 39 39 H 1.09004 * 109.46864 * 244.99915 * 22 21 20 40 40 H 1.08993 * 109.46910 * 5.00120 * 22 21 20 41 41 H 1.07996 * 119.99849 * 359.97438 * 24 23 22 42 42 H 1.08001 * 119.99440 * 180.27812 * 25 24 23 43 43 H 1.07994 * 120.00492 * 179.72652 * 26 25 24 44 44 H 1.08002 * 119.99735 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.00405 * 179.97438 * 28 27 26 46 46 H 1.08997 * 110.36556 * 322.92731 * 29 9 7 47 47 H 1.08991 * 110.36533 * 85.14032 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4486 -4.0440 -0.0255 12 1 -0.6332 -4.4203 0.9807 13 8 -1.5632 -4.3160 -0.8774 14 6 0.8516 -4.6562 -0.6105 15 1 0.8563 -4.5966 -1.6988 16 7 1.0294 -6.0396 -0.1624 17 6 1.8616 -6.8627 -0.8306 18 8 2.4629 -6.4583 -1.8031 19 6 2.0440 -8.2859 -0.3700 20 6 3.0181 -8.9878 -1.2810 21 6 4.0792 -9.5707 -0.7808 22 6 5.0536 -10.2720 -1.6918 23 6 6.4367 -9.7157 -1.4717 24 6 6.8761 -8.6398 -2.2203 25 6 8.1429 -8.1262 -2.0148 26 6 8.9746 -8.6956 -1.0687 27 6 8.5371 -9.7749 -0.3239 28 6 7.2683 -10.2850 -0.5255 29 6 1.9334 -3.7312 0.0005 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5506 -2.0863 0.9111 32 1 -0.5613 -2.0502 -0.8743 33 1 -2.4009 -3.9547 -0.5567 34 1 0.5482 -6.3633 0.6152 35 1 2.4306 -8.2914 0.6492 36 1 1.0846 -8.8026 -0.3974 37 1 2.8412 -9.0102 -2.3461 38 1 4.2563 -9.5479 0.2844 39 1 5.0522 -11.3398 -1.4722 40 1 4.7592 -10.1140 -2.7292 41 1 6.2282 -8.1982 -2.9630 42 1 8.4845 -7.2827 -2.5964 43 1 9.9659 -8.2972 -0.9112 44 1 9.1870 -10.2200 0.4150 45 1 6.9267 -11.1285 0.0561 46 1 2.8325 -3.7407 -0.6155 47 1 2.1686 -4.0411 1.0187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193884099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -47.075087 kcal Electronic energy + Delta-G solvation = -27014.598979 eV Core-core repulsion = 23161.985878 eV Total energy + Delta-G solvation = -3852.613100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03655 -40.16106 -39.42812 -36.70255 -36.52223 -35.52289 -33.74445 -33.21612 -31.75160 -30.58313 -29.67445 -28.60181 -26.62786 -25.74207 -23.45366 -22.67457 -22.25277 -21.88252 -21.38060 -20.39063 -19.12531 -18.41119 -17.84221 -17.64896 -17.36837 -16.59064 -16.39038 -16.08885 -16.02696 -15.80170 -15.56820 -14.92734 -14.64336 -14.62249 -14.45151 -14.26963 -14.22401 -14.00795 -13.75673 -13.49505 -13.17954 -13.17511 -12.84851 -12.75905 -12.71945 -12.65832 -12.17400 -12.14536 -11.92797 -11.90330 -11.79553 -11.54767 -11.15696 -10.83221 -10.78219 -10.16760 -9.91675 -9.80856 -9.57091 -8.99502 -7.91061 -5.28491 0.44136 0.51040 1.28409 1.43800 1.47582 1.53696 1.68471 2.21237 2.47185 2.89766 3.11636 3.29557 3.53457 3.78135 3.83328 3.90845 4.00523 4.02608 4.04676 4.18017 4.18928 4.29459 4.32301 4.43078 4.47277 4.55705 4.59824 4.65892 4.69655 4.79719 4.80618 4.87168 4.96718 5.03514 5.17682 5.19133 5.33895 5.41978 5.47921 5.58301 5.63920 5.64187 5.69731 5.76529 5.92223 6.11407 6.15335 6.60312 6.86378 7.02573 7.31991 7.66828 8.29344 9.18456 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.002481 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.825200 B =11283.790938 C =13286.761813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.289 1.289 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.251 4.251 8 H 0.079 0.921 9 N -0.623 5.623 10 C 0.160 3.840 11 C 0.093 3.907 12 H 0.098 0.902 13 O -0.569 6.569 14 C 0.154 3.846 15 H 0.065 0.935 16 N -0.703 5.703 17 C 0.508 3.492 18 O -0.587 6.587 19 C -0.098 4.098 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.050 4.050 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.123 4.123 29 C 0.132 3.868 30 H 0.250 0.750 31 H 0.027 0.973 32 H 0.020 0.980 33 H 0.397 0.603 34 H 0.419 0.581 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.027 0.973 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.430 -25.261 3.425 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.350 5.350 10 C 0.035 3.965 11 C 0.032 3.968 12 H 0.115 0.885 13 O -0.376 6.376 14 C 0.047 3.953 15 H 0.083 0.917 16 N -0.356 5.356 17 C 0.297 3.703 18 O -0.467 6.467 19 C -0.137 4.137 20 C -0.167 4.167 21 C -0.161 4.161 22 C -0.087 4.087 23 C -0.086 4.086 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.143 4.143 28 C -0.140 4.140 29 C 0.005 3.995 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.247 0.753 34 H 0.256 0.744 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.046 0.954 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.241 -25.073 2.387 26.501 hybrid contribution -0.298 1.855 0.186 1.888 sum 7.943 -23.218 2.573 24.674 Atomic orbital electron populations 1.70123 1.06135 1.25682 1.57667 1.25663 0.96771 1.00981 1.01973 0.85117 0.77229 0.78532 0.78242 1.21497 1.19925 1.20703 1.19399 0.90963 0.83586 1.44061 0.90326 1.44521 1.02351 1.00778 1.87396 1.21645 0.84206 0.91560 0.99131 1.23132 0.85698 0.94385 0.93561 0.88480 1.86432 1.19485 1.79744 1.51978 1.21651 0.93779 0.81354 0.98508 0.91673 1.45750 1.46508 1.10246 1.33083 1.21491 0.77561 0.88968 0.82290 1.90707 1.48443 1.78325 1.29227 1.20783 1.02851 0.88939 1.01109 1.22424 0.96686 0.98272 0.99275 1.22797 0.93956 0.99211 1.00155 1.19712 0.89474 1.00390 0.99102 1.19990 0.96130 0.95982 0.96538 1.21251 0.96553 0.97105 1.00522 1.21395 0.94487 1.00325 0.99137 1.21448 1.00524 0.97023 0.96373 1.21495 0.96575 0.96526 0.99733 1.21353 0.94017 1.00785 0.97883 1.21908 0.94962 0.84806 0.97801 0.94053 0.95464 0.96182 0.75305 0.74367 0.85845 0.84912 0.88246 0.85945 0.87914 0.91128 0.87086 0.85652 0.84496 0.83756 0.83749 0.95412 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.71 10.31 21.65 0.22 -56.49 16 2 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 3 Si 0.98 46.40 29.55 68.60 2.03 48.42 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.25 -14.61 10.28 84.03 0.86 -13.74 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -33.14 3.39 -692.00 -2.35 -35.49 16 10 C 0.16 7.82 5.16 86.73 0.45 8.26 16 11 C 0.09 3.29 3.95 31.79 0.13 3.42 16 12 H 0.10 2.75 7.99 -2.39 -0.02 2.73 16 13 O -0.57 -18.68 13.39 -148.98 -2.00 -20.67 16 14 C 0.15 5.83 3.04 46.38 0.14 5.97 16 15 H 0.07 2.97 7.73 -2.39 -0.02 2.95 16 16 N -0.70 -19.19 5.23 -436.00 -2.28 -21.47 16 17 C 0.51 14.58 7.82 87.66 0.69 15.27 16 18 O -0.59 -23.38 15.78 -3.02 -0.05 -23.43 16 19 C -0.10 -1.68 6.14 29.10 0.18 -1.50 16 20 C -0.15 -2.95 8.36 25.65 0.21 -2.74 16 21 C -0.14 -2.45 9.10 25.65 0.23 -2.22 16 22 C -0.05 -0.80 5.79 29.10 0.17 -0.63 16 23 C -0.09 -1.67 5.12 -19.86 -0.10 -1.77 16 24 C -0.14 -3.12 9.70 22.27 0.22 -2.90 16 25 C -0.14 -2.88 10.05 22.27 0.22 -2.65 16 26 C -0.14 -2.43 10.05 22.27 0.22 -2.21 16 27 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 28 C -0.12 -1.97 9.70 22.27 0.22 -1.76 16 29 C 0.13 5.84 6.92 86.85 0.60 6.44 16 30 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 31 H 0.03 1.42 7.52 -2.38 -0.02 1.40 16 32 H 0.02 1.12 7.28 -2.39 -0.02 1.11 16 33 H 0.40 9.50 9.12 -74.05 -0.68 8.83 16 34 H 0.42 7.80 8.52 -92.70 -0.79 7.01 16 35 H 0.12 1.49 7.79 -2.38 -0.02 1.47 16 36 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 2.29 7.84 -2.91 -0.02 2.26 16 38 H 0.12 1.77 7.84 -2.91 -0.02 1.75 16 39 H 0.10 1.17 8.09 -2.38 -0.02 1.15 16 40 H 0.07 1.22 7.73 -2.39 -0.02 1.20 16 41 H 0.11 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 43 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 45 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 46 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -79.47 394.00 0.22 -79.25 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.49 Total: 27.44 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.13 Total: 2.44 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.41 Total: -113.45 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.04 Total: -44.10 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -79.47 0.22 -79.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193884099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.178 kcal (2) G-P(sol) polarization free energy of solvation -79.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds