Wall clock time and date at job start Tue Mar 31 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48504 * 109.46981 * 239.99937 * 3 2 1 5 5 H 1.48499 * 109.47441 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47077 * 120.00366 * 3 2 1 7 7 C 1.38807 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00080 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.64705 * 359.97438 * 9 7 2 11 11 C 1.54324 * 107.27253 * 178.97529 * 10 9 7 12 12 H 1.08994 * 110.87005 * 96.23883 * 11 10 9 13 13 O 1.42905 * 110.71718 * 219.44648 * 11 10 9 14 14 C 1.55156 * 102.94084 * 337.80403 * 11 10 9 15 15 H 1.08996 * 111.00567 * 277.39426 * 14 11 10 16 16 N 1.46497 * 111.00429 * 153.57587 * 14 11 10 17 17 C 1.34782 * 119.99978 * 158.18326 * 16 14 11 18 18 O 1.21277 * 119.99892 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99728 * 179.97438 * 17 16 14 20 20 C 1.50700 * 109.46970 * 179.97438 * 19 17 16 21 21 C 1.30997 * 119.99766 * 126.87351 * 20 19 17 22 22 C 1.50697 * 120.00076 * 7.53220 * 21 20 19 23 23 C 1.50712 * 109.46969 * 126.96093 * 22 21 20 24 24 C 1.38233 * 119.99675 * 269.72317 * 23 22 21 25 25 C 1.38237 * 119.99641 * 179.74524 * 24 23 22 26 26 C 1.38235 * 119.99605 * 0.55246 * 25 24 23 27 27 C 1.38233 * 120.00256 * 359.70406 * 26 25 24 28 28 C 1.38232 * 119.99670 * 90.00124 * 23 22 21 29 29 C 1.47461 * 125.62932 * 179.97438 * 9 7 2 30 30 H 0.96999 * 120.00182 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.88291 * 59.55844 * 10 9 7 32 32 H 1.09004 * 109.88304 * 298.39325 * 10 9 7 33 33 H 0.96703 * 113.99733 * 293.51260 * 13 11 10 34 34 H 0.96997 * 119.99835 * 338.17978 * 16 14 11 35 35 H 1.09008 * 109.47080 * 60.00379 * 19 17 16 36 36 H 1.08997 * 109.47271 * 300.00044 * 19 17 16 37 37 H 1.08004 * 119.99955 * 306.87540 * 20 19 17 38 38 H 1.07999 * 119.99724 * 187.25834 * 21 20 19 39 39 H 1.08996 * 109.47266 * 246.95490 * 22 21 20 40 40 H 1.08994 * 109.47502 * 6.96251 * 22 21 20 41 41 H 1.08004 * 120.00353 * 0.02562 * 24 23 22 42 42 H 1.07996 * 119.99893 * 180.28254 * 25 24 23 43 43 H 1.08002 * 119.99739 * 179.72481 * 26 25 24 44 44 H 1.08003 * 119.99602 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.00595 * 359.97438 * 28 23 22 46 46 H 1.09005 * 110.34797 * 85.25855 * 29 9 7 47 47 H 1.09000 * 110.40639 * 322.92097 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0263 12 1 -0.6325 -4.4206 0.9799 13 8 -1.5635 -4.3158 -0.8778 14 6 0.8515 -4.6560 -0.6121 15 1 0.8553 -4.5965 -1.7004 16 7 1.0290 -6.0394 -0.1639 17 6 1.8111 -6.8810 -0.8687 18 8 2.3673 -6.4932 -1.8741 19 6 1.9941 -8.3039 -0.4073 20 6 2.9069 -9.0283 -1.3629 21 6 3.9635 -9.6565 -0.9102 22 6 4.1760 -9.8003 0.5748 23 6 4.3967 -11.2525 0.9123 24 6 3.3200 -12.0601 1.2275 25 6 3.5219 -13.3933 1.5320 26 6 4.8016 -13.9160 1.5324 27 6 5.8788 -13.1070 1.2224 28 6 5.6764 -11.7752 0.9124 29 6 1.9341 -3.7312 -0.0016 30 1 -0.4850 0.8400 0.0004 31 1 -0.5582 -2.0520 -0.8827 32 1 -0.5537 -2.0846 0.9028 33 1 -2.4010 -3.9546 -0.5564 34 1 0.5838 -6.3496 0.6401 35 1 1.0261 -8.8044 -0.3801 36 1 2.4339 -8.3087 0.5900 37 1 2.6899 -9.0295 -2.4209 38 1 4.6801 -10.0752 -1.6013 39 1 5.0492 -9.2209 0.8746 40 1 3.2971 -9.4337 1.1048 41 1 2.3206 -11.6506 1.2314 42 1 2.6803 -14.0254 1.7738 43 1 4.9598 -14.9566 1.7747 44 1 6.8786 -13.5156 1.2224 45 1 6.5180 -11.1433 0.6701 46 1 2.1683 -4.0421 1.0166 47 1 2.8329 -3.7408 -0.6182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193884106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:48 Heat of formation + Delta-G solvation = -15.222046 kcal Electronic energy + Delta-G solvation = -26905.352713 eV Core-core repulsion = 23054.120864 eV Total energy + Delta-G solvation = -3851.231849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.86074 -39.49432 -37.92324 -36.05302 -35.06587 -34.00599 -32.31955 -31.67015 -31.17573 -29.16048 -28.06985 -26.95192 -26.01615 -24.31209 -22.86240 -21.78153 -21.04255 -20.48854 -20.11575 -18.53657 -17.50704 -17.03245 -16.99605 -16.57172 -15.99941 -15.61765 -15.45494 -15.11550 -14.82880 -14.36844 -14.08975 -13.96886 -13.72469 -13.64972 -13.38135 -13.08879 -12.89624 -12.68868 -12.56879 -12.26191 -12.05294 -11.97339 -11.50196 -11.37702 -11.28157 -11.24438 -10.96155 -10.89307 -10.79699 -10.19449 -9.90438 -9.84066 -9.78680 -9.34871 -9.21870 -9.11524 -8.96050 -8.80849 -8.62123 -6.91588 -5.76259 -3.10797 1.04965 1.10774 2.04180 2.83767 3.38807 3.41990 3.44256 3.46602 3.50148 4.43989 4.47529 4.56440 4.62056 4.65521 4.71179 4.83630 4.84648 4.99787 5.08491 5.14332 5.21965 5.25850 5.32224 5.43509 5.44099 5.51403 5.57579 5.67489 5.73818 5.75039 5.82220 5.86719 6.08619 6.14023 6.16924 6.21988 6.32774 6.46977 6.54022 6.62521 6.64015 6.73853 6.90070 7.32034 7.46114 7.69436 7.75260 8.10672 8.17494 8.44927 9.15109 9.75151 10.38254 11.35466 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.001979 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.000880 B =14148.404759 C =14875.614241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.564 6.564 14 C 0.139 3.861 15 H 0.103 0.897 16 N -0.717 5.717 17 C 0.515 3.485 18 O -0.536 6.536 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.155 4.155 22 C -0.065 4.065 23 C -0.071 4.071 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.118 4.118 29 C 0.130 3.870 30 H 0.254 0.746 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.376 0.624 34 H 0.396 0.604 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.023 0.977 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 -26.214 4.846 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.121 0.879 16 N -0.368 5.368 17 C 0.301 3.699 18 O -0.412 6.412 19 C -0.162 4.162 20 C -0.143 4.143 21 C -0.174 4.174 22 C -0.101 4.101 23 C -0.071 4.071 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.136 4.136 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.223 0.777 34 H 0.230 0.770 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.041 0.959 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.521 -25.985 3.755 26.641 hybrid contribution -0.227 1.003 0.745 1.270 sum 4.293 -24.982 4.500 25.745 Atomic orbital electron populations 1.69911 1.04925 1.25324 1.57044 1.24818 0.95795 0.97791 1.02007 0.86138 0.78432 0.82853 0.77984 1.21033 1.21553 1.21114 1.19044 0.90528 0.82094 1.44010 0.90205 1.44248 1.01197 0.99903 1.87441 1.21818 0.85414 0.87803 1.02137 1.23464 0.85554 0.98582 0.91584 0.92501 1.86469 1.18756 1.80014 1.51604 1.22238 0.94372 0.79187 1.00884 0.87930 1.45949 1.49809 1.11898 1.29154 1.20448 0.78619 0.87112 0.83723 1.90720 1.47211 1.77908 1.25352 1.20930 1.01746 0.92925 1.00641 1.22378 0.95364 0.96857 0.99725 1.22576 0.97802 1.01398 0.95579 1.19896 1.03448 0.92322 0.94440 1.19817 0.93296 0.95631 0.98360 1.21073 0.98638 0.93818 0.99810 1.21153 0.97114 0.95430 1.00006 1.21144 0.92931 0.99774 1.00781 1.21150 0.98924 0.94005 0.99656 1.21100 0.96670 0.95529 1.00303 1.21855 0.94925 0.85713 0.97222 0.93604 0.92108 0.93339 0.77693 0.76987 0.88175 0.87835 0.86406 0.86871 0.89984 0.89696 0.86047 0.86158 0.86306 0.86190 0.86029 0.95923 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.31 55.49 0.57 -26.27 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -15.43 3.40 -170.04 -0.58 -16.01 16 10 C 0.15 3.65 5.15 -3.07 -0.02 3.63 16 11 C 0.07 1.25 3.97 -24.90 -0.10 1.15 16 12 H 0.06 0.90 7.99 -51.93 -0.42 0.49 16 13 O -0.56 -9.67 13.39 -35.23 -0.47 -10.14 16 14 C 0.14 2.61 3.09 -65.78 -0.20 2.41 16 15 H 0.10 2.26 7.63 -51.93 -0.40 1.86 16 16 N -0.72 -10.32 5.21 -51.73 -0.27 -10.59 16 17 C 0.52 7.60 7.82 -10.98 -0.09 7.51 16 18 O -0.54 -10.38 15.72 5.56 0.09 -10.29 16 19 C -0.12 -1.21 5.80 -29.04 -0.17 -1.38 16 20 C -0.12 -1.33 8.75 -36.03 -0.32 -1.65 16 21 C -0.16 -1.48 9.49 -36.03 -0.34 -1.82 16 22 C -0.06 -0.53 5.44 -29.03 -0.16 -0.69 16 23 C -0.07 -0.60 5.12 -104.62 -0.54 -1.13 16 24 C -0.12 -0.92 9.70 -39.58 -0.38 -1.30 16 25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 26 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 27 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 28 C -0.12 -0.96 9.70 -39.59 -0.38 -1.34 16 29 C 0.13 2.80 6.93 -2.50 -0.02 2.78 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 32 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 33 H 0.38 4.86 9.12 45.56 0.42 5.28 16 34 H 0.40 4.35 8.54 -40.82 -0.35 4.00 16 35 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 36 H 0.10 0.82 5.29 -51.93 -0.27 0.55 16 37 H 0.12 1.37 8.05 -52.48 -0.42 0.94 16 38 H 0.11 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.08 0.62 5.23 -51.93 -0.27 0.34 16 41 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -34.56 389.42 -10.22 -44.78 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.25 Total: 8.14 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -4.15 Total: -2.63 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.27 Total: -52.87 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.38 Total: -20.43 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.56 -10.22 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193884106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.554 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds