Wall clock time and date at job start Tue Mar 31 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48504 * 109.46981 * 239.99937 * 3 2 1 5 5 H 1.48499 * 109.47441 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47077 * 120.00366 * 3 2 1 7 7 C 1.38807 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00080 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.64705 * 359.97438 * 9 7 2 11 11 C 1.54324 * 107.27253 * 178.97529 * 10 9 7 12 12 H 1.08994 * 110.87005 * 96.23883 * 11 10 9 13 13 O 1.42905 * 110.71718 * 219.44648 * 11 10 9 14 14 C 1.55156 * 102.94084 * 337.80403 * 11 10 9 15 15 H 1.08996 * 111.00567 * 277.39426 * 14 11 10 16 16 N 1.46497 * 111.00429 * 153.57587 * 14 11 10 17 17 C 1.34782 * 119.99978 * 158.18326 * 16 14 11 18 18 O 1.21277 * 119.99892 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99728 * 179.97438 * 17 16 14 20 20 C 1.50700 * 109.46970 * 179.97438 * 19 17 16 21 21 C 1.30997 * 119.99766 * 126.87351 * 20 19 17 22 22 C 1.50697 * 120.00076 * 7.53220 * 21 20 19 23 23 C 1.50712 * 109.46969 * 126.96093 * 22 21 20 24 24 C 1.38233 * 119.99675 * 269.72317 * 23 22 21 25 25 C 1.38237 * 119.99641 * 179.74524 * 24 23 22 26 26 C 1.38235 * 119.99605 * 0.55246 * 25 24 23 27 27 C 1.38233 * 120.00256 * 359.70406 * 26 25 24 28 28 C 1.38232 * 119.99670 * 90.00124 * 23 22 21 29 29 C 1.47461 * 125.62932 * 179.97438 * 9 7 2 30 30 H 0.96999 * 120.00182 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.88291 * 59.55844 * 10 9 7 32 32 H 1.09004 * 109.88304 * 298.39325 * 10 9 7 33 33 H 0.96703 * 113.99733 * 293.51260 * 13 11 10 34 34 H 0.96997 * 119.99835 * 338.17978 * 16 14 11 35 35 H 1.09008 * 109.47080 * 60.00379 * 19 17 16 36 36 H 1.08997 * 109.47271 * 300.00044 * 19 17 16 37 37 H 1.08004 * 119.99955 * 306.87540 * 20 19 17 38 38 H 1.07999 * 119.99724 * 187.25834 * 21 20 19 39 39 H 1.08996 * 109.47266 * 246.95490 * 22 21 20 40 40 H 1.08994 * 109.47502 * 6.96251 * 22 21 20 41 41 H 1.08004 * 120.00353 * 0.02562 * 24 23 22 42 42 H 1.07996 * 119.99893 * 180.28254 * 25 24 23 43 43 H 1.08002 * 119.99739 * 179.72481 * 26 25 24 44 44 H 1.08003 * 119.99602 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.00595 * 359.97438 * 28 23 22 46 46 H 1.09005 * 110.34797 * 85.25855 * 29 9 7 47 47 H 1.09000 * 110.40639 * 322.92097 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0263 12 1 -0.6325 -4.4206 0.9799 13 8 -1.5635 -4.3158 -0.8778 14 6 0.8515 -4.6560 -0.6121 15 1 0.8553 -4.5965 -1.7004 16 7 1.0290 -6.0394 -0.1639 17 6 1.8111 -6.8810 -0.8687 18 8 2.3673 -6.4932 -1.8741 19 6 1.9941 -8.3039 -0.4073 20 6 2.9069 -9.0283 -1.3629 21 6 3.9635 -9.6565 -0.9102 22 6 4.1760 -9.8003 0.5748 23 6 4.3967 -11.2525 0.9123 24 6 3.3200 -12.0601 1.2275 25 6 3.5219 -13.3933 1.5320 26 6 4.8016 -13.9160 1.5324 27 6 5.8788 -13.1070 1.2224 28 6 5.6764 -11.7752 0.9124 29 6 1.9341 -3.7312 -0.0016 30 1 -0.4850 0.8400 0.0004 31 1 -0.5582 -2.0520 -0.8827 32 1 -0.5537 -2.0846 0.9028 33 1 -2.4010 -3.9546 -0.5564 34 1 0.5838 -6.3496 0.6401 35 1 1.0261 -8.8044 -0.3801 36 1 2.4339 -8.3087 0.5900 37 1 2.6899 -9.0295 -2.4209 38 1 4.6801 -10.0752 -1.6013 39 1 5.0492 -9.2209 0.8746 40 1 3.2971 -9.4337 1.1048 41 1 2.3206 -11.6506 1.2314 42 1 2.6803 -14.0254 1.7738 43 1 4.9598 -14.9566 1.7747 44 1 6.8786 -13.5156 1.2224 45 1 6.5180 -11.1433 0.6701 46 1 2.1683 -4.0421 1.0166 47 1 2.8329 -3.7408 -0.6182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193884106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:48 Heat of formation + Delta-G solvation = -39.051537 kcal Electronic energy + Delta-G solvation = -26906.386037 eV Core-core repulsion = 23054.120864 eV Total energy + Delta-G solvation = -3852.265173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06562 -40.15219 -39.42451 -36.85051 -36.66549 -35.52220 -33.66617 -32.88858 -31.69894 -30.53149 -29.48392 -28.42573 -26.90367 -26.10881 -23.39807 -22.62677 -22.31933 -22.06344 -21.58570 -19.42629 -19.02084 -18.47364 -18.04407 -17.57266 -17.29748 -16.78737 -16.48017 -16.01069 -15.94199 -15.76959 -15.55927 -15.02068 -14.77101 -14.63536 -14.45007 -14.21998 -14.19369 -13.89919 -13.73475 -13.48796 -13.21960 -13.16301 -12.96038 -12.81230 -12.71027 -12.66062 -12.13769 -11.92760 -11.88991 -11.87366 -11.63463 -11.52482 -11.11966 -10.80057 -10.76698 -10.14946 -9.89240 -9.75480 -9.52828 -8.97598 -7.89483 -5.26751 0.49061 0.56642 1.24721 1.44896 1.48521 1.54584 1.68429 2.22089 2.48362 2.94746 3.13264 3.31116 3.55639 3.75461 3.85448 3.93959 3.98482 4.06863 4.07683 4.19270 4.22178 4.31416 4.35179 4.39289 4.46055 4.53930 4.58251 4.66511 4.73015 4.81939 4.83445 4.92373 5.02954 5.11620 5.19703 5.24351 5.35898 5.43585 5.49302 5.63491 5.65618 5.69198 5.70348 5.77081 5.90467 6.12934 6.20178 6.61129 6.87432 7.04045 7.32589 7.68628 8.30961 9.19933 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.001979 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.000880 B =14148.404759 C =14875.614241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.981 3.019 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.623 5.623 10 C 0.161 3.839 11 C 0.092 3.908 12 H 0.098 0.902 13 O -0.570 6.570 14 C 0.153 3.847 15 H 0.066 0.934 16 N -0.702 5.702 17 C 0.511 3.489 18 O -0.588 6.588 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.062 4.062 23 C -0.084 4.084 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.137 4.137 27 C -0.130 4.130 28 C -0.133 4.133 29 C 0.131 3.869 30 H 0.250 0.750 31 H 0.019 0.981 32 H 0.027 0.973 33 H 0.396 0.604 34 H 0.419 0.581 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.127 0.873 46 H 0.045 0.955 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -28.233 6.612 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.035 3.965 11 C 0.031 3.969 12 H 0.116 0.884 13 O -0.377 6.377 14 C 0.046 3.954 15 H 0.084 0.916 16 N -0.355 5.355 17 C 0.300 3.700 18 O -0.468 6.468 19 C -0.146 4.146 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.098 4.098 23 C -0.084 4.084 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.154 4.154 27 C -0.148 4.148 28 C -0.151 4.151 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.246 0.754 34 H 0.257 0.743 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.145 0.855 46 H 0.062 0.938 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.430 -28.055 5.559 28.942 hybrid contribution -0.161 1.552 0.159 1.568 sum 4.269 -26.503 5.718 27.447 Atomic orbital electron populations 1.70120 1.06125 1.25624 1.57749 1.25664 0.96773 1.01003 1.02111 0.85119 0.77199 0.78580 0.78217 1.20733 1.21632 1.19935 1.19400 0.90986 0.83541 1.43862 0.90201 1.44526 1.02311 1.00821 1.87385 1.21635 0.84262 0.91546 0.99078 1.23160 0.85726 0.94382 0.93588 0.88430 1.86436 1.19501 1.79797 1.51997 1.21681 0.93795 0.81321 0.98639 0.91584 1.45720 1.49957 1.09835 1.29952 1.21385 0.77170 0.88763 0.82704 1.90708 1.49198 1.79118 1.27779 1.20925 1.03463 0.89047 1.01189 1.22348 0.96530 0.98335 0.99270 1.22695 0.96807 1.00116 0.96600 1.19901 1.04133 0.92509 0.93276 1.19899 0.93647 0.95752 0.99071 1.21320 0.99185 0.94154 0.99737 1.21451 0.97851 0.95626 0.99686 1.21456 0.92921 1.00743 1.00325 1.21417 0.99929 0.93951 0.99467 1.21310 0.97006 0.96117 1.00671 1.21948 0.94928 0.84687 0.97999 0.94117 0.96293 0.95497 0.75357 0.74349 0.85037 0.85152 0.88190 0.87117 0.89819 0.88322 0.84706 0.84447 0.84562 0.84736 0.85489 0.93767 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.41 10.31 21.65 0.22 -56.18 16 2 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 3 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.25 -14.29 10.28 84.03 0.86 -13.42 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -32.63 3.40 -691.88 -2.35 -34.98 16 10 C 0.16 7.75 5.15 86.73 0.45 8.20 16 11 C 0.09 3.22 3.97 31.78 0.13 3.35 16 12 H 0.10 2.71 7.99 -2.39 -0.02 2.70 16 13 O -0.57 -18.64 13.39 -148.98 -1.99 -20.63 16 14 C 0.15 5.66 3.09 46.39 0.14 5.80 16 15 H 0.07 2.98 7.63 -2.39 -0.02 2.96 16 16 N -0.70 -18.58 5.21 -435.96 -2.27 -20.86 16 17 C 0.51 14.29 7.82 87.66 0.69 14.98 16 18 O -0.59 -23.04 15.72 -3.02 -0.05 -23.09 16 19 C -0.11 -1.81 5.80 29.10 0.17 -1.64 16 20 C -0.15 -2.94 8.75 25.65 0.22 -2.71 16 21 C -0.14 -2.54 9.49 25.65 0.24 -2.30 16 22 C -0.06 -0.87 5.44 29.10 0.16 -0.72 16 23 C -0.08 -1.26 5.12 -19.86 -0.10 -1.36 16 24 C -0.13 -1.73 9.70 22.27 0.22 -1.52 16 25 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 26 C -0.14 -1.72 10.05 22.27 0.22 -1.50 16 27 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 28 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 29 C 0.13 5.64 6.93 86.85 0.60 6.24 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.02 1.06 7.30 -2.39 -0.02 1.04 16 32 H 0.03 1.39 7.51 -2.38 -0.02 1.38 16 33 H 0.40 9.47 9.12 -74.06 -0.68 8.80 16 34 H 0.42 7.45 8.54 -92.71 -0.79 6.66 16 35 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.13 1.53 5.29 -2.39 -0.01 1.51 16 37 H 0.10 2.34 8.05 -2.91 -0.02 2.32 16 38 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 40 H 0.10 1.08 5.23 -2.39 -0.01 1.07 16 41 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.13 1.29 8.06 -2.91 -0.02 1.26 16 45 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 46 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 47 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -78.36 389.42 0.24 -78.12 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.48 Total: 23.88 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.13 Total: 5.61 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.40 Total: -112.01 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -2.04 Total: -43.72 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -78.36 0.24 -78.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193884106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.067 kcal (2) G-P(sol) polarization free energy of solvation -78.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds