Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47729 * 2 1 4 4 O 1.42900 * 109.47185 * 239.99846 * 2 1 3 5 5 C 1.53005 * 109.47274 * 119.99824 * 2 1 3 6 6 C 1.52997 * 109.47405 * 184.99776 * 5 2 1 7 7 C 1.52998 * 109.47225 * 179.97438 * 6 5 2 8 8 N 1.46901 * 109.46867 * 180.02562 * 7 6 5 9 9 C 1.48183 * 111.07843 * 70.71336 * 8 7 6 10 10 C 1.53929 * 86.22638 * 137.45871 * 9 8 7 11 11 C 1.47963 * 110.99766 * 170.00294 * 8 7 6 12 12 H 1.09000 * 113.76009 * 336.84480 * 11 8 7 13 13 C 1.52998 * 113.76031 * 108.09744 * 11 8 7 14 14 N 1.46505 * 109.47470 * 303.02187 * 13 11 8 15 15 C 1.46500 * 119.99756 * 270.00188 * 14 13 11 16 16 C 1.34771 * 120.00116 * 89.99486 * 14 13 11 17 17 O 1.21288 * 119.99896 * 0.02562 * 16 14 13 18 18 C 1.50703 * 120.00048 * 180.02562 * 16 14 13 19 19 S 1.81000 * 109.46826 * 180.02562 * 18 16 14 20 20 C 1.76205 * 99.99509 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00431 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99884 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 180.27840 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71945 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72142 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72250 * 24 22 20 28 28 H 1.09000 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46592 * 300.00314 * 1 2 3 30 30 H 1.08995 * 109.47175 * 60.00377 * 1 2 3 31 31 H 0.96699 * 114.00256 * 59.99771 * 4 2 1 32 32 H 1.08997 * 109.46900 * 64.99847 * 5 2 1 33 33 H 1.08996 * 109.47026 * 305.00070 * 5 2 1 34 34 H 1.09007 * 109.46764 * 59.99685 * 6 5 2 35 35 H 1.08996 * 109.47268 * 300.00146 * 6 5 2 36 36 H 1.08997 * 109.46794 * 60.00247 * 7 6 5 37 37 H 1.08996 * 109.47312 * 300.00359 * 7 6 5 38 38 H 1.08998 * 113.65487 * 23.13361 * 9 8 7 39 39 H 1.09000 * 113.92456 * 251.82256 * 9 8 7 40 40 H 1.09003 * 113.73414 * 222.01137 * 10 9 8 41 41 H 1.09002 * 113.83150 * 90.74226 * 10 9 8 42 42 H 1.09000 * 109.47145 * 183.02022 * 13 11 8 43 43 H 1.09007 * 109.47138 * 63.02086 * 13 11 8 44 44 H 1.08996 * 109.46996 * 269.99683 * 15 14 13 45 45 H 1.09003 * 109.47400 * 29.99677 * 15 14 13 46 46 H 1.09003 * 109.46993 * 149.99446 * 15 14 13 47 47 H 1.09000 * 109.46926 * 60.00592 * 18 16 14 48 48 H 1.09001 * 109.47144 * 300.00330 * 18 16 14 49 49 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5648 -0.6133 1.3137 7 6 4.0748 -1.3340 2.5633 8 7 5.5388 -1.2298 2.6254 9 6 5.9616 0.1547 2.9417 10 6 6.9898 -0.4847 3.8921 11 6 6.0490 -1.7025 3.9314 12 1 5.3107 -1.6615 4.7322 13 6 6.7768 -3.0464 3.8590 14 7 5.8831 -4.0556 3.2853 15 6 5.0173 -4.8496 4.1605 16 6 5.8575 -4.2534 1.9525 17 8 6.5746 -3.5962 1.2279 18 6 4.9377 -5.2912 1.3623 19 16 5.1339 -5.3179 -0.4369 20 6 3.9767 -6.5802 -0.8520 21 1 3.4106 -7.0709 -0.0741 22 6 3.7928 -6.9440 -2.1788 23 7 4.4824 -6.3455 -3.1270 24 14 2.5604 -8.2768 -2.6196 25 1 3.2381 -9.5981 -2.6164 26 1 1.4597 -8.2825 -1.6228 27 1 2.0038 -8.0093 -3.9701 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.7210 -0.2702 -1.9979 32 1 1.7517 -1.7714 1.2057 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4370 1.3573 35 1 3.9994 -1.0728 0.4261 36 1 3.7864 -2.3842 2.5201 37 1 3.6401 -0.8741 3.4508 38 1 5.1965 0.7399 3.4519 39 1 6.4102 0.6830 2.1004 40 1 7.0820 0.0294 4.8488 41 1 7.9532 -0.6896 3.4253 42 1 7.0746 -3.3527 4.8618 43 1 7.6625 -2.9466 3.2315 44 1 5.5427 -5.7536 4.4683 45 1 4.7556 -4.2636 5.0416 46 1 4.1092 -5.1224 3.6228 47 1 3.9055 -5.0459 1.6120 48 1 5.1870 -6.2712 1.7692 49 1 4.3536 -6.5995 -4.0543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815913.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = -58.060009 kcal Electronic energy + Delta-G solvation = -27439.620540 eV Core-core repulsion = 23721.975049 eV Total energy + Delta-G solvation = -3717.645491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28932 -38.65746 -37.69060 -35.01358 -34.01206 -32.31990 -31.28812 -30.16801 -28.52220 -27.86851 -26.13376 -25.36192 -24.71946 -23.29740 -21.37831 -20.74263 -19.62570 -18.97695 -17.51808 -17.39361 -16.46269 -16.04520 -15.89181 -15.66809 -14.81586 -14.71498 -14.65095 -14.37140 -14.12709 -13.91161 -13.71796 -13.06003 -12.97718 -12.72243 -12.69658 -12.42426 -12.41021 -12.25614 -12.06668 -11.92060 -11.68825 -11.48385 -11.31534 -11.20307 -10.99426 -10.97756 -10.91338 -10.74587 -10.67520 -10.34925 -10.21942 -9.86840 -9.69043 -9.03338 -8.96259 -8.69559 -8.16447 -8.06141 -6.34389 -6.10829 -3.78865 3.10538 3.28081 3.32448 3.36215 3.39419 3.72386 3.98194 4.30741 4.34858 4.48869 4.71147 4.76504 4.96961 5.01319 5.10050 5.14086 5.15133 5.23691 5.24448 5.26768 5.31226 5.39582 5.46327 5.50446 5.55755 5.61188 5.65548 5.72633 5.74392 5.75642 5.79352 5.80049 5.89436 6.00693 6.02752 6.07703 6.13370 6.16658 6.27285 6.38004 6.54843 6.68195 6.89180 7.23707 7.69160 7.80043 7.82700 8.45370 8.89449 9.34273 10.96520 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008386 B = 0.004563 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.087137 B = 6135.245320 C = 8532.678673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.102 3.898 3 H 0.049 0.951 4 O -0.553 6.553 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.030 3.970 8 N -0.445 5.445 9 C 0.000 4.000 10 C -0.136 4.136 11 C 0.012 3.988 12 H 0.071 0.929 13 C 0.139 3.861 14 N -0.625 5.625 15 C 0.082 3.918 16 C 0.534 3.466 17 O -0.490 6.490 18 C -0.149 4.149 19 S -0.054 6.054 20 C -0.533 4.533 21 H 0.069 0.931 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.915 3.085 25 H -0.278 1.278 26 H -0.273 1.273 27 H -0.283 1.283 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.373 0.627 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 13.728 16.815 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.042 3.958 3 H 0.067 0.933 4 O -0.358 6.358 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.098 4.098 8 N -0.167 5.167 9 C -0.129 4.129 10 C -0.174 4.174 11 C -0.099 4.099 12 H 0.089 0.911 13 C 0.016 3.984 14 N -0.362 5.362 15 C -0.061 4.061 16 C 0.321 3.679 17 O -0.362 6.362 18 C -0.299 4.299 19 S 0.173 5.827 20 C -0.682 4.682 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.742 3.258 25 H -0.204 1.204 26 H -0.198 1.198 27 H -0.208 1.208 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.536 14.000 15.369 20.846 hybrid contribution -2.645 -0.926 1.035 2.987 sum -4.181 13.075 16.404 21.390 Atomic orbital electron populations 1.22537 0.96999 1.02960 1.01912 1.21742 0.92172 0.94930 0.86910 0.93348 1.86724 1.76630 1.57052 1.15422 1.21558 0.96260 1.01822 0.95216 1.21429 0.94359 0.99680 0.99253 1.22580 0.89227 1.01258 0.96763 1.68733 1.11060 1.08609 1.28344 1.23840 0.97433 0.92809 0.98843 1.23331 0.98933 0.95750 0.99394 1.23898 0.97574 0.95949 0.92508 0.91081 1.21260 0.93375 0.85548 0.98264 1.47746 1.42932 1.38901 1.06603 1.21700 0.94778 0.95262 0.94402 1.20116 0.83350 0.83463 0.81013 1.90706 1.40783 1.46331 1.58348 1.23546 1.00761 0.99552 1.06079 1.85413 1.55057 1.50555 0.91719 1.22873 1.26716 1.23347 0.95253 0.91231 1.24952 0.96360 0.96851 0.95304 1.70031 1.39460 1.40324 1.00426 0.86227 0.80661 0.81074 0.77864 1.20374 1.19793 1.20813 0.91583 0.92025 0.92553 0.78017 0.90835 0.91544 0.92914 0.89400 0.90886 0.95525 0.92033 0.89506 0.91432 0.88842 0.90949 0.89323 0.93003 0.91997 0.91050 0.89976 0.89933 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 9.53 37.16 0.35 -1.50 16 2 C 0.10 1.22 3.58 -26.73 -0.10 1.13 16 3 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 4 O -0.55 -8.34 12.85 -35.23 -0.45 -8.79 16 5 C -0.11 -1.41 4.92 -26.73 -0.13 -1.55 16 6 C -0.11 -1.58 5.18 -26.73 -0.14 -1.72 16 7 C 0.03 0.42 4.82 -3.82 -0.02 0.40 16 8 N -0.45 -6.38 4.98 -229.72 -1.14 -7.52 16 9 C 0.00 0.00 7.12 -2.65 -0.02 -0.02 16 10 C -0.14 -1.35 7.84 -25.79 -0.20 -1.55 16 11 C 0.01 0.13 3.58 -66.65 -0.24 -0.11 16 12 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 13 C 0.14 1.74 5.59 -4.04 -0.02 1.72 16 14 N -0.62 -9.21 2.83 -181.56 -0.51 -9.72 16 15 C 0.08 0.92 10.24 59.85 0.61 1.53 16 16 C 0.53 10.60 7.00 -10.99 -0.08 10.53 16 17 O -0.49 -11.58 14.88 5.55 0.08 -11.50 16 18 C -0.15 -3.21 4.71 36.01 0.17 -3.04 16 19 S -0.05 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.53 -15.70 9.50 30.94 0.29 -15.41 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.18 5.49 -17.43 -0.10 2.09 16 23 N -0.87 -26.87 13.22 55.49 0.73 -26.13 16 24 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.37 3.98 9.08 45.56 0.41 4.40 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.69 7.55 -51.93 -0.39 0.30 16 35 H 0.09 1.67 7.82 -51.93 -0.41 1.26 16 36 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 37 H 0.03 0.32 7.69 -51.93 -0.40 -0.08 16 38 H 0.06 0.61 7.78 -51.93 -0.40 0.21 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 42 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 43 H 0.09 1.30 7.15 -51.93 -0.37 0.93 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 46 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 47 H 0.08 1.68 7.40 -51.92 -0.38 1.30 16 48 H 0.08 1.67 8.11 -51.91 -0.42 1.25 16 49 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -36.76 407.50 -10.11 -46.87 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.11 Total: 4.90 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.39 Total: -7.49 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.92 Total: -43.38 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.37 Total: -20.29 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.76 -10.11 -46.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815913.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.187 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds