Wall clock time and date at job start Tue Mar 31 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40083 * 126.04142 * 2 1 4 4 C 1.30829 * 108.20777 * 180.02562 * 3 2 1 5 5 C 1.39874 * 108.20531 * 359.77791 * 4 3 2 6 6 C 1.34951 * 126.03314 * 180.02562 * 2 1 3 7 7 C 1.50698 * 126.12928 * 359.93916 * 6 2 1 8 8 H 1.08995 * 109.69758 * 222.05034 * 7 6 2 9 9 C 1.50615 * 109.73507 * 342.64075 * 7 6 2 10 10 N 1.35916 * 129.20098 * 316.08449 * 9 7 6 11 11 H 0.96993 * 126.50457 * 0.02562 * 10 9 7 12 12 C 1.35389 * 106.99282 * 179.74064 * 10 9 7 13 13 N 1.30835 * 108.78865 * 0.06109 * 12 10 9 14 14 C 1.33292 * 109.10294 * 0.02562 * 13 12 10 15 15 C 1.50918 * 128.91962 * 179.80461 * 14 13 12 16 16 C 1.53507 * 107.86419 * 195.96958 * 15 14 13 17 17 N 1.46943 * 109.66859 * 310.77683 * 16 15 14 18 18 C 1.46904 * 111.00185 * 307.06332 * 17 16 15 19 19 C 1.50707 * 109.46406 * 285.39281 * 18 17 16 20 20 O 1.21283 * 120.00532 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99200 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99575 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99808 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99877 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99844 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00445 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46948 * 90.00000 * 26 24 22 28 28 H 1.48493 * 109.47551 * 210.00169 * 26 24 22 29 29 H 1.48508 * 109.46888 * 330.00591 * 26 24 22 30 30 H 1.09004 * 109.46581 * 269.83076 * 1 2 3 31 31 H 1.09004 * 109.46963 * 29.82275 * 1 2 3 32 32 H 1.08997 * 109.47433 * 149.82473 * 1 2 3 33 33 H 1.08003 * 125.90325 * 180.02562 * 4 3 2 34 34 H 1.07996 * 126.04410 * 180.23431 * 5 4 3 35 35 H 1.08002 * 125.60069 * 180.02562 * 12 10 9 36 36 H 1.09003 * 109.77619 * 315.55804 * 15 14 13 37 37 H 1.08995 * 109.78339 * 76.31946 * 15 14 13 38 38 H 1.09002 * 109.43650 * 70.83580 * 16 15 14 39 39 H 1.08997 * 109.43604 * 190.75421 * 16 15 14 40 40 H 1.08996 * 109.47148 * 45.39272 * 18 17 16 41 41 H 1.08995 * 109.47270 * 165.39474 * 18 17 16 42 42 H 0.96995 * 120.00622 * 359.97438 * 21 19 18 43 43 H 0.97004 * 119.99851 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5437 -0.6667 0.0042 6 6 2.2588 -1.0913 -0.0005 7 6 1.7972 -2.5259 0.0002 8 1 2.4106 -3.1089 0.6871 9 6 0.3537 -2.5954 0.4244 10 7 -0.2754 -1.9470 1.4398 11 1 0.1272 -1.3216 2.0623 12 6 -1.5723 -2.3348 1.4135 13 7 -1.7387 -3.1828 0.4311 14 6 -0.5742 -3.3626 -0.1919 15 6 -0.2583 -4.2441 -1.3755 16 6 1.2666 -4.4037 -1.4501 17 7 1.9071 -3.0844 -1.3584 18 6 1.3501 -2.1585 -2.3538 19 6 1.8792 -2.5122 -3.7199 20 8 2.6443 -3.4439 -3.8515 21 7 1.5019 -1.7928 -4.7954 22 6 1.9827 -2.1148 -6.0384 23 1 2.6641 -2.9445 -6.1555 24 6 1.5934 -1.3736 -7.1472 25 7 2.0547 -1.6819 -8.3385 26 14 0.4144 0.0611 -6.9448 27 1 1.1865 1.3048 -6.6947 28 1 -0.3907 0.2188 -8.1826 29 1 -0.4898 -0.1996 -5.7959 30 1 -0.3632 -0.0030 1.0277 31 1 -0.3633 0.8916 -0.5111 32 1 -0.3634 -0.8884 -0.5165 33 1 4.4055 1.3709 -0.0003 34 1 4.4210 -1.2964 0.0086 35 1 -2.3427 -1.9996 2.0922 36 1 -0.7254 -5.2201 -1.2435 37 1 -0.6267 -3.7796 -2.2901 38 1 1.6065 -5.0301 -0.6252 39 1 1.5364 -4.8724 -2.3965 40 1 0.2629 -2.2361 -2.3538 41 1 1.6416 -1.1384 -2.1041 42 1 0.8897 -1.0479 -4.6903 43 1 1.7832 -1.1642 -9.1126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261799072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:12 Heat of formation + Delta-G solvation = 162.552795 kcal Electronic energy + Delta-G solvation = -29808.180743 eV Core-core repulsion = 25893.410198 eV Total energy + Delta-G solvation = -3914.770546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.18024 -41.22723 -39.05070 -37.31219 -34.45591 -33.91867 -32.75477 -31.66746 -31.56793 -30.74870 -28.76430 -27.88833 -26.86010 -24.74175 -24.12182 -22.54203 -22.06111 -21.21637 -20.10883 -19.60119 -18.96116 -18.49770 -17.96438 -16.76795 -16.27572 -16.11511 -15.50480 -15.31224 -15.04699 -14.89560 -14.65061 -14.36510 -13.86689 -13.65433 -13.51489 -13.27397 -13.13716 -12.93637 -12.73943 -12.65074 -12.42383 -12.31620 -11.93558 -11.88534 -11.48168 -11.17940 -10.94157 -10.71995 -10.58635 -10.24530 -10.02901 -9.95799 -9.53351 -9.46767 -8.74085 -8.62272 -8.45259 -8.16822 -8.10812 -6.29232 -3.80095 1.55902 1.70198 2.32376 2.69599 2.76347 2.81730 3.03573 3.08589 3.16217 3.71319 3.79337 4.11927 4.19348 4.20400 4.36788 4.43652 4.72964 4.80329 4.84417 4.94367 5.05840 5.08809 5.19461 5.21583 5.30459 5.39952 5.48337 5.54669 5.65022 5.69683 5.77406 5.83245 5.92221 6.03160 6.07751 6.20883 6.46545 6.56404 6.78720 6.90874 6.98877 7.03551 7.58575 7.59630 7.76918 8.16122 8.61897 8.97198 9.44531 9.85017 10.83901 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.004720 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.848822 B = 5930.923702 C = 6579.985936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.372 5.372 3 N -0.293 5.293 4 C 0.047 3.953 5 C -0.237 4.237 6 C 0.080 3.920 7 C 0.228 3.772 8 H 0.122 0.878 9 C -0.071 4.071 10 N -0.558 5.558 11 H 0.420 0.580 12 C 0.176 3.824 13 N -0.477 5.477 14 C 0.022 3.978 15 C -0.079 4.079 16 C 0.057 3.943 17 N -0.480 5.480 18 C 0.031 3.969 19 C 0.459 3.541 20 O -0.556 6.556 21 N -0.592 5.592 22 C -0.302 4.302 23 H 0.121 0.879 24 C 0.043 3.957 25 N -0.881 5.881 26 Si 0.875 3.125 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.271 1.271 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.185 0.815 34 H 0.154 0.846 35 H 0.210 0.790 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.368 0.632 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 2.466 22.977 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.156 5.156 3 N -0.114 5.114 4 C -0.139 4.139 5 C -0.267 4.267 6 C -0.047 4.047 7 C 0.116 3.884 8 H 0.140 0.860 9 C -0.189 4.189 10 N -0.163 5.163 11 H 0.260 0.740 12 C -0.107 4.107 13 N -0.195 5.195 14 C -0.109 4.109 15 C -0.119 4.119 16 C -0.071 4.071 17 N -0.201 5.201 18 C -0.100 4.100 19 C 0.244 3.756 20 O -0.437 6.437 21 N -0.231 5.231 22 C -0.430 4.430 23 H 0.139 0.861 24 C -0.160 4.160 25 N -0.521 5.521 26 Si 0.702 3.298 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.197 1.197 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.202 0.798 34 H 0.171 0.829 35 H 0.226 0.774 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.200 0.800 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.864 2.396 22.295 23.178 hybrid contribution -0.578 1.541 0.773 1.818 sum -6.442 3.937 23.068 24.273 Atomic orbital electron populations 1.22518 0.75105 1.05079 1.02562 1.48468 1.06101 1.03306 1.57676 1.77391 1.01960 1.07562 1.24508 1.23889 0.95194 0.95124 0.99665 1.21297 0.96275 0.94887 1.14271 1.20673 0.91609 0.89199 1.03217 1.18987 0.87447 0.89264 0.92727 0.86016 1.21878 0.98215 1.03066 0.95788 1.43458 1.10389 1.36027 1.26441 0.73970 1.25170 0.85410 0.99146 1.00941 1.69974 1.26159 1.16102 1.07276 1.20622 0.88674 1.01480 1.00149 1.20799 0.98459 0.98878 0.93722 1.22448 0.89526 0.89980 1.05180 1.62235 1.55735 1.02695 0.99477 1.22127 0.98058 0.97014 0.92827 1.19447 0.85843 0.85828 0.84476 1.90541 1.37329 1.30522 1.85291 1.42196 1.43393 1.29943 1.07591 1.19417 1.26351 1.16320 0.80947 0.86124 1.24996 0.97902 0.98020 0.95050 1.69617 1.43914 1.40145 0.98447 0.86738 0.81378 0.83328 0.78358 1.19647 1.20096 1.19689 0.91201 0.89695 0.88669 0.79791 0.82867 0.77376 0.89328 0.89836 0.90249 0.87028 0.92423 0.89575 0.79964 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 9.04 59.85 0.54 1.44 16 2 N -0.37 -4.55 3.50 -63.88 -0.22 -4.78 16 3 N -0.29 -4.00 12.57 30.62 0.39 -3.62 16 4 C 0.05 0.57 12.03 -17.37 -0.21 0.36 16 5 C -0.24 -2.95 10.72 -40.01 -0.43 -3.37 16 6 C 0.08 0.99 4.20 -82.26 -0.35 0.64 16 7 C 0.23 2.68 3.06 -69.84 -0.21 2.47 16 8 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 9 C -0.07 -0.77 3.73 -81.89 -0.31 -1.07 16 10 N -0.56 -4.36 3.42 -10.25 -0.04 -4.39 16 11 H 0.42 2.42 7.69 -40.82 -0.31 2.11 16 12 C 0.18 1.45 12.54 -89.78 -1.13 0.33 16 13 N -0.48 -5.83 11.24 -10.69 -0.12 -5.95 16 14 C 0.02 0.28 6.07 -82.91 -0.50 -0.23 16 15 C -0.08 -1.04 5.70 -27.51 -0.16 -1.19 16 16 C 0.06 0.78 5.61 -3.54 -0.02 0.76 16 17 N -0.48 -7.17 4.42 -230.23 -1.02 -8.18 16 18 C 0.03 0.54 4.34 -4.97 -0.02 0.51 16 19 C 0.46 10.40 7.60 -10.98 -0.08 10.32 16 20 O -0.56 -14.43 14.59 5.55 0.08 -14.35 16 21 N -0.59 -14.34 5.09 -10.96 -0.06 -14.40 16 22 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 23 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 24 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 25 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 26 Si 0.88 19.90 27.74 -169.99 -4.71 15.18 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 29 H -0.27 -5.70 6.52 56.52 0.37 -5.33 16 30 H 0.07 0.51 5.61 -51.93 -0.29 0.22 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.09 4.60 -51.93 -0.24 0.85 16 33 H 0.19 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.21 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.22 6.70 -51.93 -0.35 0.87 16 38 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.11 1.84 6.76 -51.93 -0.35 1.49 16 40 H 0.06 0.94 5.14 -51.93 -0.27 0.68 16 41 H 0.09 1.50 5.67 -51.93 -0.29 1.21 16 42 H 0.37 8.11 5.76 -40.82 -0.24 7.87 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -34.91 337.83 -7.80 -42.71 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -4.85 Total: 14.42 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -3.12 Total: 3.36 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.29 Total: -66.42 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.35 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.71 Total: 15.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.91 -7.80 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261799072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.267 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds