Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43203 * 179.97438 * 273.90794 * 3 2 1 5 5 O 1.21613 * 119.99936 * 92.91766 * 4 3 2 6 6 N 1.34768 * 120.00186 * 272.91976 * 4 3 2 7 7 C 1.46499 * 120.00236 * 174.82238 * 6 4 3 8 8 H 1.08994 * 110.45105 * 333.02846 * 7 6 4 9 9 C 1.56200 * 110.43785 * 210.50322 * 7 6 4 10 10 H 1.08995 * 116.52478 * 41.61810 * 9 7 6 11 11 C 1.55929 * 104.44847 * 170.90073 * 9 7 6 12 12 C 1.54577 * 104.64675 * 70.32521 * 11 9 7 13 13 C 1.55930 * 104.64208 * 359.97438 * 12 11 9 14 14 H 1.09000 * 116.52984 * 160.40168 * 13 12 11 15 15 C 1.56947 * 100.70205 * 274.96087 * 9 7 6 16 16 C 1.54578 * 110.40201 * 95.41707 * 7 6 4 17 17 H 1.09006 * 110.40483 * 237.69927 * 16 7 6 18 18 C 1.50698 * 110.40401 * 359.97438 * 16 7 6 19 19 O 1.21283 * 119.99952 * 84.90264 * 18 16 7 20 20 N 1.34772 * 120.00261 * 264.89663 * 18 16 7 21 21 C 1.47582 * 134.49472 * 175.47851 * 20 18 16 22 22 C 1.53951 * 86.11726 * 155.35897 * 21 20 18 23 23 C 1.50700 * 113.74187 * 137.95072 * 22 21 20 24 24 H 1.08003 * 119.99646 * 1.92534 * 23 22 21 25 25 C 1.37879 * 120.00159 * 182.20006 * 23 22 21 26 26 N 1.31512 * 119.99585 * 359.72350 * 25 23 22 27 27 Si 1.86804 * 119.99994 * 179.72662 * 25 23 22 28 28 H 1.48490 * 109.46907 * 60.00073 * 27 25 23 29 29 H 1.48504 * 109.46639 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.46881 * 299.99964 * 27 25 23 31 31 C 1.47819 * 134.45731 * 355.34647 * 20 18 16 32 32 H 1.09000 * 109.47695 * 353.16846 * 1 2 3 33 33 H 1.09004 * 109.47246 * 113.17979 * 1 2 3 34 34 H 1.09007 * 109.46951 * 233.17412 * 1 2 3 35 35 H 0.97000 * 119.99957 * 354.81818 * 6 4 3 36 36 H 1.09000 * 110.39905 * 189.11259 * 11 9 7 37 37 H 1.08994 * 110.40572 * 311.41327 * 11 9 7 38 38 H 1.08999 * 110.40499 * 241.20965 * 12 11 9 39 39 H 1.09005 * 110.40696 * 118.78559 * 12 11 9 40 40 H 1.09001 * 112.02751 * 189.72885 * 15 9 7 41 41 H 1.09005 * 112.09250 * 63.23087 * 15 9 7 42 42 H 1.08996 * 113.77184 * 41.06190 * 21 20 18 43 43 H 1.09003 * 113.87227 * 269.67217 * 21 20 18 44 44 H 1.08999 * 113.74108 * 269.15567 * 22 21 20 45 45 H 0.97002 * 119.99719 * 179.97438 * 26 25 23 46 46 H 1.08994 * 113.77010 * 90.37309 * 31 20 18 47 47 H 1.09005 * 113.83361 * 318.91989 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0011 0.0006 5 8 4.6865 0.0550 -1.0509 6 7 4.7514 -0.0580 1.1665 7 6 6.2119 -0.1719 1.1639 8 1 6.5544 -0.6580 0.2505 9 6 6.6996 -0.9623 2.4198 10 1 6.1169 -1.8401 2.6991 11 6 8.2178 -1.2061 2.1607 12 6 8.8674 0.1894 2.3016 13 6 7.6805 1.1452 2.6320 14 1 7.9374 2.1002 3.0902 15 6 6.7682 0.1913 3.4818 16 6 6.8615 1.2234 1.3080 17 1 7.5218 1.4241 0.4642 18 6 5.8006 2.2890 1.4079 19 8 5.3007 2.5481 2.4821 20 7 5.4074 2.9541 0.3037 21 6 4.3707 3.9653 0.0196 22 6 5.2551 4.3863 -1.1681 23 6 4.4817 4.6704 -2.4299 24 1 3.4039 4.6005 -2.4299 25 6 5.1503 5.0139 -3.5858 26 7 6.4626 5.0990 -3.5857 27 14 4.1919 5.3586 -5.1518 28 1 3.2629 6.4943 -4.9236 29 1 5.1367 5.7042 -6.2442 30 1 3.4146 4.1519 -5.5321 31 6 5.8435 2.9650 -1.1086 32 1 -0.3634 1.0203 0.1222 33 1 -0.3634 -0.4045 -0.9447 34 1 -0.3633 -0.6160 0.8227 35 1 4.2690 -0.0252 2.0074 36 1 8.6248 -1.8915 2.9042 37 1 8.3735 -1.6000 1.1565 38 1 9.3426 0.4837 1.3658 39 1 9.5938 0.1902 3.1144 40 1 7.2565 -0.1288 4.4022 41 1 5.7887 0.6285 3.6760 42 1 4.2789 4.7294 0.7914 43 1 3.4107 3.5419 -0.2759 44 1 5.9734 5.1691 -0.9245 45 1 6.9330 5.3403 -4.3989 46 1 5.3181 2.2453 -1.7362 47 1 6.9257 2.9318 -1.2357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271094821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = 16.689308 kcal Electronic energy + Delta-G solvation = -29624.425041 eV Core-core repulsion = 25774.576973 eV Total energy + Delta-G solvation = -3849.848069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18583 -38.88955 -38.66454 -36.57658 -34.25427 -34.04793 -32.57064 -30.57659 -29.48021 -28.82006 -28.41506 -27.41673 -25.12557 -24.93748 -23.44767 -21.85824 -20.29037 -20.07739 -19.36652 -18.47986 -17.84123 -16.89985 -16.45941 -16.26110 -15.69487 -15.46273 -14.90588 -14.74670 -14.55088 -14.46607 -14.12302 -13.90795 -13.73454 -13.64555 -13.48223 -13.09787 -12.29933 -12.04330 -11.95047 -11.49411 -11.40396 -11.37870 -11.25040 -11.17108 -11.02726 -10.91209 -10.85517 -10.80705 -10.71710 -10.43980 -10.33089 -10.25091 -10.22153 -10.01401 -9.45671 -9.17754 -9.01636 -8.76576 -8.47995 -7.69298 -6.08745 -4.13146 1.70687 2.37067 3.14710 3.24570 3.31795 3.36145 3.38836 3.68519 3.72964 4.26696 4.33367 4.41549 4.44853 4.52410 5.04614 5.09276 5.16262 5.20225 5.23311 5.26860 5.31945 5.35936 5.36892 5.42096 5.49527 5.57684 5.66276 5.79721 5.89490 5.89627 5.96308 6.04852 6.09656 6.19908 6.26851 6.30656 6.33711 6.37027 6.46873 6.50921 6.78966 6.88449 6.99304 7.32545 7.52234 7.64796 7.88940 8.26127 8.29037 8.65575 8.88020 8.90336 9.52581 11.01268 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.004604 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.501632 B = 6079.679817 C = 7640.824735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.090 4.090 3 C -0.223 4.223 4 C 0.633 3.367 5 O -0.506 6.506 6 N -0.713 5.713 7 C 0.164 3.836 8 H 0.103 0.897 9 C -0.111 4.111 10 H 0.105 0.895 11 C -0.118 4.118 12 C -0.124 4.124 13 C -0.077 4.077 14 H 0.103 0.897 15 C -0.124 4.124 16 C -0.122 4.122 17 H 0.094 0.906 18 C 0.541 3.459 19 O -0.571 6.571 20 N -0.633 5.633 21 C 0.104 3.896 22 C 0.033 3.967 23 C -0.516 4.516 24 H 0.060 0.940 25 C 0.069 3.931 26 N -0.887 5.887 27 Si 0.894 3.106 28 H -0.276 1.276 29 H -0.287 1.287 30 H -0.275 1.275 31 C 0.111 3.889 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.263 0.737 46 H 0.085 0.915 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -13.950 12.083 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.092 4.092 3 C -0.226 4.226 4 C 0.420 3.580 5 O -0.381 6.381 6 N -0.364 5.364 7 C 0.059 3.941 8 H 0.121 0.879 9 C -0.130 4.130 10 H 0.123 0.877 11 C -0.156 4.156 12 C -0.162 4.162 13 C -0.096 4.096 14 H 0.121 0.879 15 C -0.161 4.161 16 C -0.144 4.144 17 H 0.112 0.888 18 C 0.330 3.670 19 O -0.452 6.452 20 N -0.365 5.365 21 C -0.018 4.018 22 C 0.014 3.986 23 C -0.554 4.554 24 H 0.078 0.922 25 C -0.134 4.134 26 N -0.525 5.525 27 Si 0.721 3.279 28 H -0.201 1.201 29 H -0.212 1.212 30 H -0.201 1.201 31 C -0.011 4.011 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.568 -13.856 11.879 18.318 hybrid contribution -0.599 0.227 -0.699 0.948 sum -2.167 -13.629 11.180 17.761 Atomic orbital electron populations 1.19092 0.83663 1.04085 1.03729 1.22648 0.93858 0.94454 0.98253 1.20732 0.92619 1.05637 1.03602 1.14673 0.82637 0.76508 0.84172 1.90882 1.68475 1.47730 1.31055 1.45797 1.07415 1.74901 1.08278 1.22097 0.78538 0.93794 0.99648 0.87947 1.23921 0.96559 0.97748 0.94732 0.87739 1.22577 0.93880 0.97259 1.01847 1.22682 0.97235 0.94503 1.01772 1.23366 0.94147 0.98361 0.93721 0.87929 1.23690 1.01039 0.94686 0.96696 1.22888 0.97113 0.94300 1.00133 0.88766 1.19778 0.83238 0.80737 0.83197 1.90565 1.59291 1.67678 1.27690 1.50522 1.36013 1.40589 1.09370 1.23391 0.92517 0.88412 0.97464 1.20487 0.93725 0.92389 0.91978 1.20898 0.93084 1.47612 0.93794 0.92182 1.24988 0.94873 0.94588 0.98998 1.69939 1.06711 1.47406 1.28404 0.86628 0.79772 0.78858 0.82626 1.20146 1.21228 1.20072 1.23776 0.99200 1.01054 0.77099 0.88933 0.89291 0.89422 0.76072 0.91304 0.91347 0.91308 0.91443 0.91183 0.89677 0.92397 0.91414 0.92141 0.92710 0.89716 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.42 10.32 34.37 0.35 -0.06 16 2 C -0.09 -1.23 14.13 -37.12 -0.52 -1.76 16 3 C -0.22 -3.69 13.62 -38.84 -0.53 -4.22 16 4 C 0.63 11.26 7.34 -14.34 -0.11 11.16 16 5 O -0.51 -10.65 15.22 5.27 0.08 -10.57 16 6 N -0.71 -10.58 3.67 -53.78 -0.20 -10.78 16 7 C 0.16 2.26 2.64 -65.39 -0.17 2.09 16 8 H 0.10 1.49 7.16 -51.93 -0.37 1.12 16 9 C -0.11 -1.14 4.80 -85.20 -0.41 -1.55 16 10 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.12 -1.08 6.21 -24.34 -0.15 -1.23 16 12 C -0.12 -1.27 6.21 -24.34 -0.15 -1.42 16 13 C -0.08 -0.99 4.26 -85.36 -0.36 -1.36 16 14 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 15 C -0.12 -1.42 6.24 -22.44 -0.14 -1.56 16 16 C -0.12 -1.90 2.56 -89.41 -0.23 -2.13 16 17 H 0.09 1.55 7.34 -51.93 -0.38 1.17 16 18 C 0.54 10.58 5.54 -10.99 -0.06 10.52 16 19 O -0.57 -12.00 15.66 5.55 0.09 -11.91 16 20 N -0.63 -13.62 3.61 -178.19 -0.64 -14.26 16 21 C 0.10 2.33 8.40 -2.96 -0.02 2.31 16 22 C 0.03 0.83 3.60 -90.84 -0.33 0.51 16 23 C -0.52 -13.93 8.77 -34.44 -0.30 -14.23 16 24 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 25 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 26 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 27 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 C 0.11 2.59 7.84 -2.84 -0.02 2.57 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.40 5.49 8.48 -40.82 -0.35 5.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.62 7.84 -51.93 -0.41 0.22 16 38 H 0.07 0.72 7.84 -51.93 -0.41 0.32 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.16 6.52 -51.93 -0.34 0.82 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 44 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.08 2.15 6.68 -51.93 -0.35 1.80 16 47 H 0.06 1.34 8.00 -51.93 -0.42 0.92 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -32.24 385.73 -9.61 -41.85 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.21 Total: 6.86 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -3.25 Total: 1.39 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.10 Total: -49.51 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.17 Total: -22.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.24 -9.61 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271094821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.538 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds