Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43203 * 179.97438 * 273.90794 * 3 2 1 5 5 O 1.21613 * 119.99936 * 92.91766 * 4 3 2 6 6 N 1.34768 * 120.00186 * 272.91976 * 4 3 2 7 7 C 1.46499 * 120.00236 * 174.82238 * 6 4 3 8 8 H 1.08994 * 110.45105 * 333.02846 * 7 6 4 9 9 C 1.56200 * 110.43785 * 210.50322 * 7 6 4 10 10 H 1.08995 * 116.52478 * 41.61810 * 9 7 6 11 11 C 1.55929 * 104.44847 * 170.90073 * 9 7 6 12 12 C 1.54577 * 104.64675 * 70.32521 * 11 9 7 13 13 C 1.55930 * 104.64208 * 359.97438 * 12 11 9 14 14 H 1.09000 * 116.52984 * 160.40168 * 13 12 11 15 15 C 1.56947 * 100.70205 * 274.96087 * 9 7 6 16 16 C 1.54578 * 110.40201 * 95.41707 * 7 6 4 17 17 H 1.09006 * 110.40483 * 237.69927 * 16 7 6 18 18 C 1.50698 * 110.40401 * 359.97438 * 16 7 6 19 19 O 1.21283 * 119.99952 * 84.90264 * 18 16 7 20 20 N 1.34772 * 120.00261 * 264.89663 * 18 16 7 21 21 C 1.47582 * 134.49472 * 175.47851 * 20 18 16 22 22 C 1.53951 * 86.11726 * 155.35897 * 21 20 18 23 23 C 1.50700 * 113.74187 * 137.95072 * 22 21 20 24 24 H 1.08003 * 119.99646 * 1.92534 * 23 22 21 25 25 C 1.37879 * 120.00159 * 182.20006 * 23 22 21 26 26 N 1.31512 * 119.99585 * 359.72350 * 25 23 22 27 27 Si 1.86804 * 119.99994 * 179.72662 * 25 23 22 28 28 H 1.48490 * 109.46907 * 60.00073 * 27 25 23 29 29 H 1.48504 * 109.46639 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.46881 * 299.99964 * 27 25 23 31 31 C 1.47819 * 134.45731 * 355.34647 * 20 18 16 32 32 H 1.09000 * 109.47695 * 353.16846 * 1 2 3 33 33 H 1.09004 * 109.47246 * 113.17979 * 1 2 3 34 34 H 1.09007 * 109.46951 * 233.17412 * 1 2 3 35 35 H 0.97000 * 119.99957 * 354.81818 * 6 4 3 36 36 H 1.09000 * 110.39905 * 189.11259 * 11 9 7 37 37 H 1.08994 * 110.40572 * 311.41327 * 11 9 7 38 38 H 1.08999 * 110.40499 * 241.20965 * 12 11 9 39 39 H 1.09005 * 110.40696 * 118.78559 * 12 11 9 40 40 H 1.09001 * 112.02751 * 189.72885 * 15 9 7 41 41 H 1.09005 * 112.09250 * 63.23087 * 15 9 7 42 42 H 1.08996 * 113.77184 * 41.06190 * 21 20 18 43 43 H 1.09003 * 113.87227 * 269.67217 * 21 20 18 44 44 H 1.08999 * 113.74108 * 269.15567 * 22 21 20 45 45 H 0.97002 * 119.99719 * 179.97438 * 26 25 23 46 46 H 1.08994 * 113.77010 * 90.37309 * 31 20 18 47 47 H 1.09005 * 113.83361 * 318.91989 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0011 0.0006 5 8 4.6865 0.0550 -1.0509 6 7 4.7514 -0.0580 1.1665 7 6 6.2119 -0.1719 1.1639 8 1 6.5544 -0.6580 0.2505 9 6 6.6996 -0.9623 2.4198 10 1 6.1169 -1.8401 2.6991 11 6 8.2178 -1.2061 2.1607 12 6 8.8674 0.1894 2.3016 13 6 7.6805 1.1452 2.6320 14 1 7.9374 2.1002 3.0902 15 6 6.7682 0.1913 3.4818 16 6 6.8615 1.2234 1.3080 17 1 7.5218 1.4241 0.4642 18 6 5.8006 2.2890 1.4079 19 8 5.3007 2.5481 2.4821 20 7 5.4074 2.9541 0.3037 21 6 4.3707 3.9653 0.0196 22 6 5.2551 4.3863 -1.1681 23 6 4.4817 4.6704 -2.4299 24 1 3.4039 4.6005 -2.4299 25 6 5.1503 5.0139 -3.5858 26 7 6.4626 5.0990 -3.5857 27 14 4.1919 5.3586 -5.1518 28 1 3.2629 6.4943 -4.9236 29 1 5.1367 5.7042 -6.2442 30 1 3.4146 4.1519 -5.5321 31 6 5.8435 2.9650 -1.1086 32 1 -0.3634 1.0203 0.1222 33 1 -0.3634 -0.4045 -0.9447 34 1 -0.3633 -0.6160 0.8227 35 1 4.2690 -0.0252 2.0074 36 1 8.6248 -1.8915 2.9042 37 1 8.3735 -1.6000 1.1565 38 1 9.3426 0.4837 1.3658 39 1 9.5938 0.1902 3.1144 40 1 7.2565 -0.1288 4.4022 41 1 5.7887 0.6285 3.6760 42 1 4.2789 4.7294 0.7914 43 1 3.4107 3.5419 -0.2759 44 1 5.9734 5.1691 -0.9245 45 1 6.9330 5.3403 -4.3989 46 1 5.3181 2.2453 -1.7362 47 1 6.9257 2.9318 -1.2357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271094821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = -2.620886 kcal Electronic energy + Delta-G solvation = -29625.262394 eV Core-core repulsion = 25774.576973 eV Total energy + Delta-G solvation = -3850.685422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40154 -40.44382 -40.09703 -38.27412 -35.47566 -35.12586 -34.65111 -31.93494 -30.55558 -30.26494 -29.30589 -28.53893 -26.96691 -26.90482 -24.67146 -23.18157 -21.82927 -21.16842 -20.60885 -19.72048 -19.31914 -18.79462 -18.12890 -17.57883 -17.10966 -16.68997 -16.50989 -16.08826 -15.92810 -15.81835 -15.66320 -15.11215 -14.92961 -14.50702 -14.40221 -14.37708 -14.09837 -13.77673 -13.37060 -13.30606 -12.95221 -12.83081 -12.64308 -12.48864 -12.29124 -12.26741 -12.10811 -12.07632 -11.92419 -11.81426 -11.52418 -11.35258 -11.32462 -11.24195 -11.21700 -11.15367 -10.65176 -10.43326 -10.26469 -9.52698 -8.19438 -6.30699 0.48543 1.24348 1.42689 1.44941 1.52101 1.63025 1.94759 2.08956 2.43025 2.45606 3.11139 3.21061 3.31207 3.44286 3.48403 3.74471 4.03605 4.09782 4.22827 4.25287 4.29368 4.32904 4.39474 4.46342 4.49911 4.55804 4.58448 4.60180 4.73542 4.74756 4.75638 4.85447 4.91498 4.94273 4.97043 5.01860 5.07433 5.15289 5.17329 5.19701 5.34860 5.39527 5.45726 5.53379 5.77028 6.18671 6.23137 6.29045 6.74679 6.90854 6.99400 7.21193 7.38655 8.90636 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.004604 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.501632 B = 6079.679817 C = 7640.824735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.050 4.050 3 C -0.299 4.299 4 C 0.629 3.371 5 O -0.554 6.554 6 N -0.701 5.701 7 C 0.160 3.840 8 H 0.092 0.908 9 C -0.093 4.093 10 H 0.130 0.870 11 C -0.112 4.112 12 C -0.119 4.119 13 C -0.083 4.083 14 H 0.090 0.910 15 C -0.117 4.117 16 C -0.123 4.123 17 H 0.079 0.921 18 C 0.540 3.460 19 O -0.582 6.582 20 N -0.636 5.636 21 C 0.113 3.887 22 C 0.026 3.974 23 C -0.532 4.532 24 H 0.060 0.940 25 C 0.020 3.980 26 N -0.918 5.918 27 Si 0.958 3.042 28 H -0.266 1.266 29 H -0.282 1.282 30 H -0.273 1.273 31 C 0.131 3.869 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.411 0.589 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.036 0.964 45 H 0.265 0.735 46 H 0.065 0.935 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -15.683 13.413 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.053 4.053 3 C -0.302 4.302 4 C 0.417 3.583 5 O -0.433 6.433 6 N -0.352 5.352 7 C 0.055 3.945 8 H 0.110 0.890 9 C -0.111 4.111 10 H 0.148 0.852 11 C -0.150 4.150 12 C -0.156 4.156 13 C -0.102 4.102 14 H 0.108 0.892 15 C -0.155 4.155 16 C -0.145 4.145 17 H 0.097 0.903 18 C 0.332 3.668 19 O -0.464 6.464 20 N -0.369 5.369 21 C -0.009 4.009 22 C 0.006 3.994 23 C -0.570 4.570 24 H 0.078 0.922 25 C -0.180 4.180 26 N -0.556 5.556 27 Si 0.783 3.217 28 H -0.190 1.190 29 H -0.208 1.208 30 H -0.198 1.198 31 C 0.009 3.991 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.247 0.753 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.632 -15.598 13.270 20.647 hybrid contribution -0.364 0.794 -1.034 1.353 sum -2.996 -14.804 12.236 19.438 Atomic orbital electron populations 1.19531 0.79792 1.05703 1.06014 1.23821 0.95011 0.91182 0.95253 1.20901 0.93173 1.09050 1.07044 1.14976 0.83470 0.75668 0.84145 1.90838 1.69606 1.50305 1.32566 1.45782 1.07869 1.73680 1.07829 1.22286 0.77828 0.93035 1.01364 0.89008 1.23966 0.97637 0.97654 0.91886 0.85246 1.22600 0.92519 0.96975 1.02929 1.22668 0.96468 0.94246 1.02218 1.23431 0.95532 0.98976 0.92227 0.89206 1.23643 0.99659 0.94349 0.97809 1.23002 0.96068 0.93891 1.01549 0.90291 1.20483 0.83460 0.80736 0.82166 1.90550 1.59961 1.68078 1.27809 1.50477 1.36017 1.41238 1.09160 1.23182 0.92308 0.88825 0.96591 1.20397 0.93932 0.92324 0.92697 1.21187 0.93305 1.47720 0.94774 0.92150 1.25773 0.95749 0.94341 1.02111 1.70052 1.08122 1.48198 1.29263 0.85608 0.78535 0.78879 0.78679 1.19035 1.20753 1.19833 1.23288 0.98185 0.99511 0.78158 0.87542 0.87339 0.86228 0.75315 0.88372 0.91306 0.92124 0.89196 0.88409 0.91955 0.91667 0.91453 0.94596 0.92616 0.91694 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.32 70.18 0.72 -0.03 16 2 C -0.05 -1.32 14.13 31.12 0.44 -0.88 16 3 C -0.30 -10.11 13.62 30.02 0.41 -9.70 16 4 C 0.63 23.41 7.34 85.49 0.63 24.04 16 5 O -0.55 -24.78 15.22 -4.07 -0.06 -24.84 16 6 N -0.70 -21.29 3.67 -442.32 -1.62 -22.92 16 7 C 0.16 4.41 2.64 46.64 0.12 4.54 16 8 H 0.09 2.76 7.16 -2.39 -0.02 2.74 16 9 C -0.09 -1.70 4.80 -7.28 -0.03 -1.74 16 10 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 11 C -0.11 -1.72 6.21 32.15 0.20 -1.52 16 12 C -0.12 -2.18 6.21 32.15 0.20 -1.98 16 13 C -0.08 -2.07 4.26 -7.39 -0.03 -2.10 16 14 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.12 -2.44 6.24 33.38 0.21 -2.24 16 16 C -0.12 -3.93 2.56 -10.01 -0.03 -3.96 16 17 H 0.08 2.75 7.34 -2.38 -0.02 2.73 16 18 C 0.54 21.78 5.54 87.66 0.49 22.26 16 19 O -0.58 -24.81 15.66 -3.04 -0.05 -24.85 16 20 N -0.64 -28.63 3.61 -836.07 -3.02 -31.65 16 21 C 0.11 5.25 8.40 86.49 0.73 5.98 16 22 C 0.03 1.35 3.60 -10.88 -0.04 1.31 16 23 C -0.53 -29.56 8.77 25.60 0.22 -29.34 16 24 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 25 C 0.02 1.13 5.46 84.66 0.46 1.60 16 26 N -0.92 -53.54 13.29 21.45 0.28 -53.26 16 27 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 30 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 31 C 0.13 6.53 7.84 86.44 0.68 7.20 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.41 11.22 8.48 -92.71 -0.79 10.43 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.10 7.84 -2.39 -0.02 1.08 16 38 H 0.06 1.22 7.84 -2.39 -0.02 1.20 16 39 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.61 6.52 -2.38 -0.02 1.60 16 42 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.07 3.11 8.09 -2.39 -0.02 3.09 16 44 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.06 3.51 6.68 -2.39 -0.02 3.49 16 47 H 0.05 2.49 8.00 -2.38 -0.02 2.47 16 Total: -1.00 -73.60 385.73 3.14 -70.46 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.20 Total: 27.89 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 5.38 Total: 13.44 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -4.36 Total: -107.83 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -0.11 Total: -49.70 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -73.60 3.14 -70.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271094821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.843 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds