Wall clock time and date at job start Tue Mar 31 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00169 * 2 1 4 4 C 1.52999 * 109.47440 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47109 * 65.00030 * 4 3 2 6 6 C 1.42905 * 113.99885 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46994 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.47195 * 64.99781 * 7 6 5 9 9 C 1.34777 * 119.99846 * 179.97438 * 8 7 6 10 10 O 1.21350 * 119.99865 * 359.97438 * 9 8 7 11 11 C 1.49449 * 119.99831 * 180.02562 * 9 8 7 12 12 O 1.21349 * 119.99754 * 359.97438 * 11 9 8 13 13 N 1.34772 * 119.99933 * 180.02562 * 11 9 8 14 14 C 1.47021 * 125.64937 * 359.94885 * 13 11 9 15 15 C 1.54370 * 107.28813 * 181.13182 * 14 13 11 16 16 C 1.55147 * 102.92092 * 22.14333 * 15 14 13 17 17 O 1.42905 * 111.00578 * 82.63751 * 16 15 14 18 18 C 1.50702 * 111.00308 * 206.45025 * 16 15 14 19 19 H 1.08002 * 120.00299 * 356.82421 * 18 16 15 20 20 C 1.37884 * 119.99942 * 176.53980 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.47423 * 125.64837 * 179.97438 * 13 11 9 27 27 H 1.09001 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47483 * 300.00223 * 1 2 3 29 29 H 1.09001 * 109.46845 * 60.00244 * 1 2 3 30 30 H 1.09006 * 109.47378 * 59.99406 * 3 2 1 31 31 H 1.09003 * 109.47126 * 300.00052 * 3 2 1 32 32 H 1.09003 * 109.47097 * 304.99561 * 4 3 2 33 33 H 1.09002 * 109.47463 * 184.99824 * 4 3 2 34 34 H 1.08997 * 109.47225 * 59.99809 * 6 5 4 35 35 H 1.09003 * 109.46913 * 299.99417 * 6 5 4 36 36 H 1.09002 * 109.47198 * 304.99662 * 7 6 5 37 37 H 1.08997 * 109.47249 * 184.99637 * 7 6 5 38 38 H 0.96999 * 119.99794 * 359.97438 * 8 7 6 39 39 H 1.09001 * 109.88518 * 300.52094 * 14 13 11 40 40 H 1.09002 * 109.88165 * 61.68403 * 14 13 11 41 41 H 1.09001 * 110.70699 * 263.79361 * 15 14 13 42 42 H 1.09008 * 110.75075 * 140.51110 * 15 14 13 43 43 H 0.96701 * 113.99475 * 183.17547 * 17 16 15 44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 45 45 H 1.08996 * 110.36708 * 36.99367 * 26 13 11 46 46 H 1.08999 * 110.36888 * 274.67114 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4187 -1.3215 7 6 5.7267 -0.2360 -2.6607 8 7 5.3596 0.6670 -3.7545 9 6 5.5734 0.2984 -5.0331 10 8 6.0703 -0.7812 -5.2784 11 6 5.1995 1.2197 -6.1489 12 8 4.7030 2.2995 -5.9035 13 7 5.4128 0.8510 -7.4275 14 6 6.0036 -0.4222 -7.8649 15 6 6.0767 -0.3884 -9.4065 16 6 6.0444 1.1302 -9.7221 17 8 7.3455 1.7076 -9.5956 18 6 5.4747 1.3848 -11.0939 19 1 5.2035 0.5543 -11.7287 20 6 5.2944 2.6783 -11.5363 21 7 5.6247 3.6897 -10.7633 22 14 4.5811 2.9938 -13.2336 23 1 3.1018 3.0836 -13.1401 24 1 5.1215 4.2695 -13.7683 25 1 4.9529 1.8794 -14.1420 26 6 5.0927 1.6577 -8.6192 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5686 0.8428 33 1 3.9785 2.1765 0.0902 34 1 5.7355 -0.2135 -0.5069 35 1 5.8638 1.3946 -1.2592 36 1 5.1751 -1.1708 -2.7607 37 1 6.7967 -0.4394 -2.7012 38 1 4.9628 1.5301 -3.5584 39 1 7.0056 -0.5282 -7.4491 40 1 5.3761 -1.2527 -7.5413 41 1 5.2148 -0.8918 -9.8444 42 1 7.0061 -0.8359 -9.7590 43 1 7.3666 2.6641 -9.7358 44 1 5.4982 4.5996 -11.0747 45 1 5.2845 2.7130 -8.4255 46 1 4.0533 1.5075 -8.9110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326107518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:09 Heat of formation + Delta-G solvation = -202.324851 kcal Electronic energy + Delta-G solvation = -28630.519333 eV Core-core repulsion = 24328.032083 eV Total energy + Delta-G solvation = -4302.487250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28360 -38.93005 -38.37014 -37.54148 -37.12070 -35.01200 -34.07230 -32.19971 -31.10691 -30.18655 -29.17586 -27.88119 -26.57201 -25.84090 -24.07477 -22.92315 -22.68717 -21.46821 -19.78693 -19.43694 -17.49757 -17.32308 -17.17559 -17.09312 -16.60060 -15.88670 -15.84129 -15.68636 -15.49759 -15.11120 -14.90091 -14.55002 -14.35906 -14.13913 -13.68960 -13.29872 -13.03228 -12.92996 -12.80337 -12.47573 -12.43827 -12.23966 -11.94310 -11.64443 -11.60498 -11.49268 -11.35943 -11.05503 -11.05019 -10.74961 -10.53595 -10.48129 -10.18610 -10.05127 -9.98672 -9.37219 -9.16580 -9.09109 -8.68685 -8.39556 -7.85839 -6.29510 -4.38683 1.86845 2.70991 3.20635 3.23007 3.28330 3.31533 3.41962 3.67471 3.96776 4.26502 4.51391 4.68445 4.76523 4.79204 4.86180 4.94828 4.98479 4.99208 5.02857 5.06595 5.12287 5.32993 5.37948 5.44064 5.52600 5.62688 5.83238 5.88305 6.09291 6.24752 6.39087 6.54274 6.73505 6.75849 6.83023 6.85999 6.87618 7.19588 7.29959 7.35101 7.73307 7.92889 8.01814 8.10630 8.50363 8.65399 9.30228 9.41099 10.77855 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.002323 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.215298 B =12048.131641 C =12786.751561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.061 3.939 4 C 0.064 3.936 5 O -0.376 6.376 6 C 0.049 3.951 7 C 0.123 3.877 8 N -0.702 5.702 9 C 0.510 3.490 10 O -0.519 6.519 11 C 0.508 3.492 12 O -0.539 6.539 13 N -0.574 5.574 14 C 0.112 3.888 15 C -0.122 4.122 16 C 0.249 3.751 17 O -0.582 6.582 18 C -0.536 4.536 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.091 3.909 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.383 0.617 44 H 0.271 0.729 45 H 0.088 0.912 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 -4.559 21.534 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.016 4.016 4 C -0.013 4.013 5 O -0.295 6.295 6 C -0.028 4.028 7 C -0.001 4.001 8 N -0.357 5.357 9 C 0.291 3.709 10 O -0.395 6.395 11 C 0.290 3.710 12 O -0.418 6.418 13 N -0.306 5.306 14 C -0.011 4.011 15 C -0.160 4.160 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.574 4.574 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.030 4.030 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.234 0.766 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.086 -5.413 21.536 22.578 hybrid contribution -0.852 1.604 -0.552 1.898 sum -4.938 -3.809 20.984 21.891 Atomic orbital electron populations 1.22753 0.80953 1.02918 0.99950 1.87949 1.19703 1.27269 1.95393 1.22574 0.92314 0.85609 1.01080 1.22527 0.93527 0.97602 0.87624 1.88031 1.21421 1.82076 1.38004 1.22785 0.82432 1.00396 0.97169 1.21439 1.01036 0.93884 0.83719 1.45650 1.63347 1.22012 1.04701 1.20392 0.79220 0.87096 0.84150 1.90723 1.42121 1.22587 1.84022 1.19566 0.81395 0.86858 0.83145 1.90717 1.44884 1.22798 1.83389 1.48636 1.57135 1.19881 1.04955 1.22148 0.98362 0.84701 0.95877 1.22725 1.02224 0.98507 0.92515 1.19631 0.80686 0.87482 0.91423 1.86110 1.30712 1.27957 1.94300 1.21487 1.43028 0.92752 1.00149 0.91350 1.25097 0.94203 0.95986 0.98029 1.69655 1.47570 0.99303 1.36841 0.86374 0.79162 0.77831 0.83380 1.20423 1.21002 1.19650 1.23495 1.00325 0.96692 0.82487 0.89554 0.94232 0.93829 0.91831 0.92082 0.92373 0.91576 0.91319 0.92292 0.90121 0.89506 0.74980 0.91175 0.91740 0.90389 0.90508 0.76622 0.91934 0.89329 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.99 10.67 -40.08 -0.43 -4.42 16 3 C 0.06 0.49 6.32 37.16 0.23 0.72 16 4 C 0.06 0.49 6.32 37.16 0.23 0.72 16 5 O -0.38 -3.95 10.25 -40.08 -0.41 -4.36 16 6 C 0.05 0.40 6.07 37.16 0.23 0.63 16 7 C 0.12 1.31 6.06 -4.04 -0.02 1.29 16 8 N -0.70 -9.76 5.50 -60.73 -0.33 -10.10 16 9 C 0.51 9.00 7.86 -11.58 -0.09 8.91 16 10 O -0.52 -9.75 14.12 5.50 0.08 -9.67 16 11 C 0.51 10.55 7.91 -11.59 -0.09 10.46 16 12 O -0.54 -12.11 16.73 5.50 0.09 -12.01 16 13 N -0.57 -12.48 3.33 -170.99 -0.57 -13.05 16 14 C 0.11 2.22 5.49 -3.04 -0.02 2.20 16 15 C -0.12 -2.52 6.13 -24.88 -0.15 -2.68 16 16 C 0.25 6.07 0.88 -89.61 -0.08 6.00 16 17 O -0.58 -15.00 13.17 -35.23 -0.46 -15.46 16 18 C -0.54 -13.89 8.26 -34.44 -0.28 -14.18 16 19 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 21 N -0.89 -23.65 10.69 55.43 0.59 -23.05 16 22 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.09 2.19 5.50 -2.52 -0.01 2.18 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.41 5.54 7.94 -40.82 -0.32 5.21 16 39 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 40 H 0.06 1.18 7.70 -51.93 -0.40 0.79 16 41 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 42 H 0.08 1.53 8.14 -51.92 -0.42 1.10 16 43 H 0.38 10.08 7.26 45.56 0.33 10.41 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.09 2.35 7.47 -51.93 -0.39 1.97 16 46 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -31.52 386.21 -6.31 -37.83 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.62 Total: 13.94 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 0.96 Total: 19.31 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.31 Total: -46.20 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.13 Total: -45.92 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.52 -6.31 -37.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326107518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.497 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds