Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00169 * 2 1 4 4 C 1.52999 * 109.47440 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47109 * 65.00030 * 4 3 2 6 6 C 1.42905 * 113.99885 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46994 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.47195 * 64.99781 * 7 6 5 9 9 C 1.34777 * 119.99846 * 179.97438 * 8 7 6 10 10 O 1.21350 * 119.99865 * 359.97438 * 9 8 7 11 11 C 1.49449 * 119.99831 * 180.02562 * 9 8 7 12 12 O 1.21349 * 119.99754 * 359.97438 * 11 9 8 13 13 N 1.34772 * 119.99933 * 180.02562 * 11 9 8 14 14 C 1.47021 * 125.64937 * 359.94885 * 13 11 9 15 15 C 1.54370 * 107.28813 * 181.13182 * 14 13 11 16 16 C 1.55147 * 102.92092 * 22.14333 * 15 14 13 17 17 O 1.42905 * 111.00578 * 82.63751 * 16 15 14 18 18 C 1.50702 * 111.00308 * 206.45025 * 16 15 14 19 19 H 1.08002 * 120.00299 * 356.82421 * 18 16 15 20 20 C 1.37884 * 119.99942 * 176.53980 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.47423 * 125.64837 * 179.97438 * 13 11 9 27 27 H 1.09001 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47483 * 300.00223 * 1 2 3 29 29 H 1.09001 * 109.46845 * 60.00244 * 1 2 3 30 30 H 1.09006 * 109.47378 * 59.99406 * 3 2 1 31 31 H 1.09003 * 109.47126 * 300.00052 * 3 2 1 32 32 H 1.09003 * 109.47097 * 304.99561 * 4 3 2 33 33 H 1.09002 * 109.47463 * 184.99824 * 4 3 2 34 34 H 1.08997 * 109.47225 * 59.99809 * 6 5 4 35 35 H 1.09003 * 109.46913 * 299.99417 * 6 5 4 36 36 H 1.09002 * 109.47198 * 304.99662 * 7 6 5 37 37 H 1.08997 * 109.47249 * 184.99637 * 7 6 5 38 38 H 0.96999 * 119.99794 * 359.97438 * 8 7 6 39 39 H 1.09001 * 109.88518 * 300.52094 * 14 13 11 40 40 H 1.09002 * 109.88165 * 61.68403 * 14 13 11 41 41 H 1.09001 * 110.70699 * 263.79361 * 15 14 13 42 42 H 1.09008 * 110.75075 * 140.51110 * 15 14 13 43 43 H 0.96701 * 113.99475 * 183.17547 * 17 16 15 44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 45 45 H 1.08996 * 110.36708 * 36.99367 * 26 13 11 46 46 H 1.08999 * 110.36888 * 274.67114 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4187 -1.3215 7 6 5.7267 -0.2360 -2.6607 8 7 5.3596 0.6670 -3.7545 9 6 5.5734 0.2984 -5.0331 10 8 6.0703 -0.7812 -5.2784 11 6 5.1995 1.2197 -6.1489 12 8 4.7030 2.2995 -5.9035 13 7 5.4128 0.8510 -7.4275 14 6 6.0036 -0.4222 -7.8649 15 6 6.0767 -0.3884 -9.4065 16 6 6.0444 1.1302 -9.7221 17 8 7.3455 1.7076 -9.5956 18 6 5.4747 1.3848 -11.0939 19 1 5.2035 0.5543 -11.7287 20 6 5.2944 2.6783 -11.5363 21 7 5.6247 3.6897 -10.7633 22 14 4.5811 2.9938 -13.2336 23 1 3.1018 3.0836 -13.1401 24 1 5.1215 4.2695 -13.7683 25 1 4.9529 1.8794 -14.1420 26 6 5.0927 1.6577 -8.6192 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5686 0.8428 33 1 3.9785 2.1765 0.0902 34 1 5.7355 -0.2135 -0.5069 35 1 5.8638 1.3946 -1.2592 36 1 5.1751 -1.1708 -2.7607 37 1 6.7967 -0.4394 -2.7012 38 1 4.9628 1.5301 -3.5584 39 1 7.0056 -0.5282 -7.4491 40 1 5.3761 -1.2527 -7.5413 41 1 5.2148 -0.8918 -9.8444 42 1 7.0061 -0.8359 -9.7590 43 1 7.3666 2.6641 -9.7358 44 1 5.4982 4.5996 -11.0747 45 1 5.2845 2.7130 -8.4255 46 1 4.0533 1.5075 -8.9110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326107518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = -228.645982 kcal Electronic energy + Delta-G solvation = -28631.660703 eV Core-core repulsion = 24328.032083 eV Total energy + Delta-G solvation = -4303.628620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79731 -40.11317 -39.41044 -38.86806 -38.26966 -36.42489 -35.63641 -34.20429 -31.95242 -31.83657 -30.04448 -29.66829 -27.63592 -27.13237 -25.58829 -23.96515 -23.50370 -22.76060 -21.55655 -20.97507 -19.18900 -18.78041 -18.18614 -18.01058 -17.70358 -17.24723 -17.06361 -16.98751 -16.43535 -16.35042 -16.22147 -15.97801 -15.76310 -15.30906 -14.88920 -14.73758 -14.67940 -14.46231 -13.96847 -13.91744 -13.51209 -13.36593 -13.24156 -13.05528 -12.84455 -12.67623 -12.56721 -12.51947 -12.34128 -12.24104 -12.23123 -12.11228 -11.96543 -11.22992 -10.76743 -10.67120 -10.62491 -10.53949 -10.35872 -10.30251 -9.64006 -8.25742 -6.42292 0.34675 1.28906 1.44069 1.46201 1.55915 2.12378 2.37672 2.50861 2.65950 2.86547 3.00338 3.33993 3.77600 3.83838 4.07056 4.12445 4.14994 4.17775 4.23265 4.32878 4.40949 4.45052 4.47789 4.53114 4.59089 4.65613 4.68373 4.73039 4.79522 4.81928 4.84991 4.96189 5.05942 5.13522 5.18329 5.33554 5.43320 5.74811 5.97272 6.05860 6.14649 6.28291 6.36933 6.61723 6.67876 6.92687 7.28415 7.36098 8.80274 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.002323 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.215298 B =12048.131641 C =12786.751561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.054 3.946 4 C 0.059 3.941 5 O -0.408 6.408 6 C 0.053 3.947 7 C 0.118 3.882 8 N -0.685 5.685 9 C 0.516 3.484 10 O -0.531 6.531 11 C 0.501 3.499 12 O -0.562 6.562 13 N -0.582 5.582 14 C 0.119 3.881 15 C -0.115 4.115 16 C 0.233 3.767 17 O -0.588 6.588 18 C -0.555 4.555 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.916 5.916 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.267 1.267 26 C 0.104 3.896 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.417 0.583 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.376 0.624 44 H 0.271 0.729 45 H 0.056 0.944 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -5.334 22.768 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.022 4.022 4 C -0.017 4.017 5 O -0.328 6.328 6 C -0.024 4.024 7 C -0.004 4.004 8 N -0.339 5.339 9 C 0.296 3.704 10 O -0.409 6.409 11 C 0.284 3.716 12 O -0.443 6.443 13 N -0.314 5.314 14 C -0.003 4.003 15 C -0.153 4.153 16 C 0.193 3.807 17 O -0.397 6.397 18 C -0.593 4.593 19 H 0.089 0.911 20 C -0.174 4.174 21 N -0.555 5.555 22 Si 0.792 3.208 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.191 1.191 26 C -0.018 4.018 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.226 0.774 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.133 -6.206 22.817 24.004 hybrid contribution -0.862 1.875 -0.843 2.229 sum -4.995 -4.332 21.974 22.948 Atomic orbital electron populations 1.22886 0.79848 1.03593 1.00703 1.87900 1.21154 1.28759 1.95583 1.22764 0.92737 0.84938 1.01748 1.22721 0.93286 0.98780 0.86869 1.87986 1.22596 1.82683 1.39547 1.22846 0.81796 1.01592 0.96119 1.21729 1.01806 0.93102 0.83741 1.45701 1.61629 1.22440 1.04081 1.19760 0.79840 0.86335 0.84487 1.90716 1.43250 1.22689 1.84200 1.20271 0.80543 0.87113 0.83641 1.90692 1.45725 1.24003 1.83845 1.48689 1.57587 1.20245 1.04903 1.22169 0.98655 0.84298 0.95136 1.22739 1.03422 0.95895 0.93257 1.19861 0.80052 0.89716 0.91088 1.86102 1.31754 1.27460 1.94340 1.21773 1.43394 0.93107 1.00995 0.91103 1.25833 0.94480 0.95836 1.01282 1.69761 1.48092 0.99504 1.38164 0.85418 0.78360 0.77632 0.79395 1.20152 1.20903 1.19092 1.23092 0.99684 0.95237 0.83807 0.89031 0.92387 0.94134 0.89289 0.93223 0.91420 0.89414 0.88738 0.90672 0.90954 0.88018 0.74619 0.91146 0.89830 0.88917 0.89558 0.77413 0.91960 0.92530 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.26 10.67 -144.34 -1.54 -9.80 16 3 C 0.05 0.80 6.32 71.98 0.45 1.26 16 4 C 0.06 0.79 6.32 71.98 0.45 1.24 16 5 O -0.41 -7.86 10.25 -144.34 -1.48 -9.34 16 6 C 0.05 0.73 6.07 71.98 0.44 1.16 16 7 C 0.12 2.29 6.06 86.38 0.52 2.81 16 8 N -0.69 -18.16 5.50 -464.40 -2.55 -20.71 16 9 C 0.52 17.75 7.86 87.27 0.69 18.44 16 10 O -0.53 -19.23 14.12 -3.25 -0.05 -19.28 16 11 C 0.50 20.87 7.91 87.27 0.69 21.56 16 12 O -0.56 -25.67 16.73 -3.24 -0.05 -25.72 16 13 N -0.58 -25.42 3.33 -813.24 -2.70 -28.13 16 14 C 0.12 4.61 5.49 86.75 0.48 5.09 16 15 C -0.12 -4.67 6.13 31.80 0.19 -4.47 16 16 C 0.23 11.48 0.88 -10.14 -0.01 11.47 16 17 O -0.59 -30.77 13.17 -148.98 -1.96 -32.73 16 18 C -0.55 -28.78 8.26 25.60 0.21 -28.57 16 19 H 0.07 3.56 7.78 -2.91 -0.02 3.53 16 20 C 0.03 1.38 5.29 84.66 0.45 1.83 16 21 N -0.92 -49.27 10.69 21.45 0.23 -49.04 16 22 Si 0.97 41.44 29.54 68.60 2.03 43.46 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 C 0.10 5.13 5.50 86.86 0.48 5.61 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.42 10.71 7.94 -92.71 -0.74 9.97 16 39 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 40 H 0.08 2.92 7.70 -2.39 -0.02 2.90 16 41 H 0.09 3.44 8.03 -2.39 -0.02 3.43 16 42 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 43 H 0.38 20.41 7.26 -74.06 -0.54 19.87 16 44 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 45 H 0.06 3.13 7.47 -2.39 -0.02 3.11 16 46 H 0.06 2.86 8.03 -2.39 -0.02 2.84 16 Total: -1.00 -67.96 386.21 -2.06 -70.02 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.27 Total: 42.25 kcal Atomic # 6 Polarization: 32.73 SS G_CDS: 6.29 Total: 39.03 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -5.03 Total: -97.88 kcal Atomic # 8 Polarization: -91.80 SS G_CDS: -5.08 Total: -96.88 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -67.96 -2.06 -70.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326107518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.623 kcal (2) G-P(sol) polarization free energy of solvation -67.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds