Wall clock time and date at job start Tue Mar 31 2020 05:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46490 * 120.00251 * 2 1 4 4 C 1.53006 * 109.47451 * 269.99853 * 3 2 1 5 5 O 1.42900 * 109.46766 * 64.99496 * 4 3 2 6 6 C 1.42900 * 113.99582 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46816 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.47215 * 65.00070 * 7 6 5 9 9 C 1.34775 * 119.99546 * 179.97438 * 2 1 3 10 10 O 1.21358 * 119.99993 * 183.65229 * 9 2 1 11 11 C 1.49450 * 120.00316 * 3.38395 * 9 2 1 12 12 O 1.21344 * 120.00072 * 354.41986 * 11 9 2 13 13 N 1.34780 * 120.00136 * 174.43268 * 11 9 2 14 14 C 1.47023 * 125.64679 * 359.68197 * 13 11 9 15 15 C 1.54332 * 107.26143 * 178.85461 * 14 13 11 16 16 C 1.55147 * 103.02392 * 338.14158 * 15 14 13 17 17 O 1.42902 * 111.00458 * 277.23316 * 16 15 14 18 18 C 1.50701 * 111.03815 * 153.39495 * 16 15 14 19 19 H 1.07998 * 120.00246 * 6.33676 * 18 16 15 20 20 C 1.37883 * 120.00119 * 186.33013 * 18 16 15 21 21 N 1.31513 * 119.99807 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00037 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47162 * 90.00352 * 22 20 18 24 24 H 1.48498 * 109.47080 * 210.00007 * 22 20 18 25 25 H 1.48501 * 109.47283 * 330.00325 * 22 20 18 26 26 C 1.47423 * 125.64635 * 179.97438 * 13 11 9 27 27 H 1.08992 * 109.47336 * 264.00244 * 1 2 3 28 28 H 1.08999 * 109.46605 * 24.00578 * 1 2 3 29 29 H 1.09006 * 109.47273 * 143.99898 * 1 2 3 30 30 H 1.08999 * 109.47385 * 29.99904 * 3 2 1 31 31 H 1.09005 * 109.47542 * 149.99656 * 3 2 1 32 32 H 1.08990 * 109.47227 * 185.00119 * 4 3 2 33 33 H 1.08998 * 109.46501 * 305.00207 * 4 3 2 34 34 H 1.09005 * 109.47277 * 299.99759 * 6 5 4 35 35 H 1.08995 * 109.47486 * 60.00527 * 6 5 4 36 36 H 1.09003 * 109.46705 * 184.99696 * 7 6 5 37 37 H 1.08997 * 109.47061 * 304.99997 * 7 6 5 38 38 H 0.96698 * 114.00063 * 179.97438 * 8 7 6 39 39 H 1.09003 * 109.88315 * 298.39521 * 14 13 11 40 40 H 1.08994 * 109.88162 * 59.56593 * 14 13 11 41 41 H 1.09003 * 110.84936 * 219.67234 * 15 14 13 42 42 H 1.09000 * 110.51589 * 96.45563 * 15 14 13 43 43 H 0.96703 * 113.99749 * 173.65068 * 17 16 15 44 44 H 0.96999 * 119.99854 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.36918 * 322.92151 * 26 13 11 46 46 H 1.08997 * 110.36910 * 85.14132 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 8 1.2061 1.9934 -2.0814 6 6 1.3326 2.4163 -3.4405 7 6 -0.0564 2.6906 -4.0206 8 8 -0.6495 3.7950 -3.3346 9 6 2.1388 -1.1672 0.0005 10 8 3.3505 -1.1684 0.0675 11 6 1.3935 -2.4604 -0.0753 12 8 0.1807 -2.4650 -0.0352 13 7 2.0683 -3.6216 -0.1880 14 6 3.5306 -3.7599 -0.2539 15 6 3.8441 -5.2680 -0.3493 16 6 2.5650 -5.9283 0.2295 17 8 2.6066 -5.9607 1.6576 18 6 2.3683 -7.3122 -0.3337 19 1 3.1278 -7.7521 -0.9632 20 6 1.2188 -8.0170 -0.0454 21 7 0.2939 -7.4813 0.7208 22 14 0.9754 -9.7326 -0.7430 23 1 1.5299 -10.7346 0.2024 24 1 -0.4746 -9.9862 -0.9387 25 1 1.6774 -9.8410 -2.0471 26 6 1.4623 -4.9629 -0.2716 27 1 -0.3633 -0.1074 1.0220 28 1 -0.3632 0.9388 -0.4181 29 1 -0.3634 -0.8314 -0.6041 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1383 0.5139 32 1 3.0734 2.6062 -1.4438 33 1 2.9643 0.9130 -1.9815 34 1 1.9302 3.3269 -3.4837 35 1 1.8208 1.6334 -4.0208 36 1 0.0329 2.9270 -5.0809 37 1 -0.6828 1.8072 -3.8967 38 1 -1.5336 4.0258 -3.6512 39 1 3.9125 -3.2435 -1.1346 40 1 3.9831 -3.3454 0.6468 41 1 4.7159 -5.5220 0.2538 42 1 3.9936 -5.5622 -1.3882 43 1 1.7892 -6.2749 2.0678 44 1 -0.5146 -7.9772 0.9240 45 1 0.5843 -5.0233 0.3714 46 1 1.1934 -5.1941 -1.3023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329452058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:56 Heat of formation + Delta-G solvation = -190.416391 kcal Electronic energy + Delta-G solvation = -29603.169239 eV Core-core repulsion = 25301.198379 eV Total energy + Delta-G solvation = -4301.970860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.49501 -38.81052 -38.18975 -37.23155 -36.74354 -35.49826 -34.11227 -32.25007 -31.01801 -30.21152 -29.08127 -27.87869 -26.69134 -25.64573 -24.18123 -22.79674 -22.69907 -21.07602 -19.66706 -18.84095 -17.98038 -17.26127 -17.19494 -16.79633 -16.53633 -16.17153 -15.73195 -15.31311 -15.16445 -14.91582 -14.70282 -14.46930 -14.32305 -13.91992 -13.37049 -13.06700 -12.94369 -12.84899 -12.71956 -12.43865 -12.25095 -12.17030 -12.14764 -11.77466 -11.65632 -11.48383 -11.24383 -11.05244 -10.87891 -10.69578 -10.50148 -10.46567 -10.39640 -10.20511 -9.86796 -9.36721 -8.92754 -8.74393 -8.64492 -8.36224 -7.86538 -6.29877 -4.39395 1.83810 2.62953 3.20038 3.27638 3.30006 3.38282 3.62310 3.81740 3.90795 4.25252 4.61627 4.70779 4.83851 4.89393 4.94852 4.97990 5.08166 5.14301 5.20950 5.41893 5.43709 5.49935 5.51866 5.63104 5.79647 5.83474 5.86074 6.07332 6.21167 6.32276 6.45794 6.52632 6.73327 6.84157 6.87419 6.91567 7.18337 7.22481 7.29041 7.31450 7.72027 7.84335 8.01125 8.09976 8.49959 8.64825 9.28250 9.36834 10.77290 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.002721 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.076845 B =10288.223429 C =10814.888478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.585 5.585 3 C 0.117 3.883 4 C 0.046 3.954 5 O -0.375 6.375 6 C 0.062 3.938 7 C 0.078 3.922 8 O -0.567 6.567 9 C 0.507 3.493 10 O -0.524 6.524 11 C 0.508 3.492 12 O -0.530 6.530 13 N -0.575 5.575 14 C 0.112 3.888 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.581 6.581 18 C -0.536 4.536 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.893 5.893 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.093 3.907 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.378 0.622 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.381 0.619 44 H 0.270 0.730 45 H 0.091 0.909 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 18.973 -7.126 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.319 5.319 3 C -0.006 4.006 4 C -0.032 4.032 5 O -0.294 6.294 6 C -0.015 4.015 7 C 0.000 4.000 8 O -0.372 6.372 9 C 0.291 3.709 10 O -0.400 6.400 11 C 0.291 3.709 12 O -0.410 6.410 13 N -0.307 5.307 14 C -0.011 4.011 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.389 6.389 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.028 4.028 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.225 0.775 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.230 0.770 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.284 19.179 -6.667 20.345 hybrid contribution -1.098 -1.000 -0.806 1.690 sum 0.186 18.179 -7.473 19.656 Atomic orbital electron populations 1.22371 0.77259 1.04541 1.02898 1.47613 1.08523 1.04509 1.71275 1.21595 0.98959 0.85010 0.94999 1.22981 0.86477 0.99428 0.94326 1.87958 1.29235 1.87570 1.24661 1.22513 0.96375 0.98678 0.83928 1.22191 0.93854 0.89573 0.94389 1.86546 1.35677 1.51310 1.63703 1.20459 0.87517 0.85434 0.77516 1.90705 1.13585 1.87278 1.48405 1.19548 0.87204 0.84184 0.79956 1.90625 1.13182 1.86038 1.51134 1.48679 1.08889 1.06549 1.66573 1.22133 0.79714 0.97750 1.01511 1.22708 0.99781 0.92226 1.01221 1.19632 0.88169 0.91851 0.79557 1.86135 1.42772 1.89331 1.20693 1.21460 1.04287 0.99893 1.31823 0.91414 1.25091 0.95290 0.98660 0.94237 1.69711 1.08874 1.38077 1.36510 0.86388 0.77372 0.83576 0.79480 1.20377 1.21028 1.19701 1.23464 0.99977 0.77562 1.01806 0.92781 0.91067 0.87613 0.89219 0.88038 0.92223 0.92816 0.92752 0.91983 0.92278 0.92518 0.77478 0.92100 0.90981 0.90526 0.90446 0.76957 0.91973 0.89092 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 9.31 59.85 0.56 1.55 16 2 N -0.59 -8.57 2.84 -182.08 -0.52 -9.09 16 3 C 0.12 1.34 5.81 -4.04 -0.02 1.31 16 4 C 0.05 0.49 6.28 37.16 0.23 0.72 16 5 O -0.38 -4.38 9.25 -40.08 -0.37 -4.75 16 6 C 0.06 0.57 6.32 37.16 0.23 0.80 16 7 C 0.08 0.61 7.43 37.16 0.28 0.89 16 8 O -0.57 -5.05 13.62 -40.08 -0.55 -5.60 16 9 C 0.51 9.01 7.69 -11.59 -0.09 8.92 16 10 O -0.52 -9.72 13.72 5.49 0.08 -9.64 16 11 C 0.51 10.40 7.80 -11.58 -0.09 10.31 16 12 O -0.53 -11.47 13.40 5.50 0.07 -11.40 16 13 N -0.58 -12.31 3.33 -171.04 -0.57 -12.88 16 14 C 0.11 2.18 5.51 -3.06 -0.02 2.17 16 15 C -0.12 -2.49 6.13 -24.90 -0.15 -2.64 16 16 C 0.25 6.01 0.87 -89.64 -0.08 5.93 16 17 O -0.58 -14.84 13.16 -35.23 -0.46 -15.31 16 18 C -0.54 -13.81 8.27 -34.44 -0.28 -14.09 16 19 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 21 N -0.89 -23.45 10.69 55.43 0.59 -22.85 16 22 Si 0.90 20.12 29.54 -169.99 -5.02 15.09 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.09 2.20 5.38 -2.54 -0.01 2.19 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.87 7.24 -51.93 -0.38 0.49 16 29 H 0.11 1.71 5.36 -51.93 -0.28 1.43 16 30 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.10 1.14 7.37 -51.93 -0.38 0.76 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.38 1.59 9.12 45.56 0.42 2.01 16 39 H 0.06 1.09 7.84 -51.93 -0.41 0.68 16 40 H 0.07 1.44 7.44 -51.93 -0.39 1.05 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 43 H 0.38 9.89 7.56 45.56 0.34 10.23 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.09 2.39 7.33 -51.93 -0.38 2.01 16 46 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -31.12 377.58 -6.23 -37.35 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -5.63 Total: 13.61 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 0.46 Total: 19.78 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.49 Total: -44.82 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -1.23 Total: -46.69 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.12 -6.23 -37.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329452058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.070 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds