Wall clock time and date at job start Tue Mar 31 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46490 * 120.00251 * 2 1 4 4 C 1.53006 * 109.47451 * 269.99853 * 3 2 1 5 5 O 1.42900 * 109.46766 * 64.99496 * 4 3 2 6 6 C 1.42900 * 113.99582 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46816 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.47215 * 65.00070 * 7 6 5 9 9 C 1.34775 * 119.99546 * 179.97438 * 2 1 3 10 10 O 1.21358 * 119.99993 * 183.65229 * 9 2 1 11 11 C 1.49450 * 120.00316 * 3.38395 * 9 2 1 12 12 O 1.21344 * 120.00072 * 354.41986 * 11 9 2 13 13 N 1.34780 * 120.00136 * 174.43268 * 11 9 2 14 14 C 1.47023 * 125.64679 * 359.68197 * 13 11 9 15 15 C 1.54332 * 107.26143 * 178.85461 * 14 13 11 16 16 C 1.55147 * 103.02392 * 338.14158 * 15 14 13 17 17 O 1.42902 * 111.00458 * 277.23316 * 16 15 14 18 18 C 1.50701 * 111.03815 * 153.39495 * 16 15 14 19 19 H 1.07998 * 120.00246 * 6.33676 * 18 16 15 20 20 C 1.37883 * 120.00119 * 186.33013 * 18 16 15 21 21 N 1.31513 * 119.99807 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00037 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47162 * 90.00352 * 22 20 18 24 24 H 1.48498 * 109.47080 * 210.00007 * 22 20 18 25 25 H 1.48501 * 109.47283 * 330.00325 * 22 20 18 26 26 C 1.47423 * 125.64635 * 179.97438 * 13 11 9 27 27 H 1.08992 * 109.47336 * 264.00244 * 1 2 3 28 28 H 1.08999 * 109.46605 * 24.00578 * 1 2 3 29 29 H 1.09006 * 109.47273 * 143.99898 * 1 2 3 30 30 H 1.08999 * 109.47385 * 29.99904 * 3 2 1 31 31 H 1.09005 * 109.47542 * 149.99656 * 3 2 1 32 32 H 1.08990 * 109.47227 * 185.00119 * 4 3 2 33 33 H 1.08998 * 109.46501 * 305.00207 * 4 3 2 34 34 H 1.09005 * 109.47277 * 299.99759 * 6 5 4 35 35 H 1.08995 * 109.47486 * 60.00527 * 6 5 4 36 36 H 1.09003 * 109.46705 * 184.99696 * 7 6 5 37 37 H 1.08997 * 109.47061 * 304.99997 * 7 6 5 38 38 H 0.96698 * 114.00063 * 179.97438 * 8 7 6 39 39 H 1.09003 * 109.88315 * 298.39521 * 14 13 11 40 40 H 1.08994 * 109.88162 * 59.56593 * 14 13 11 41 41 H 1.09003 * 110.84936 * 219.67234 * 15 14 13 42 42 H 1.09000 * 110.51589 * 96.45563 * 15 14 13 43 43 H 0.96703 * 113.99749 * 173.65068 * 17 16 15 44 44 H 0.96999 * 119.99854 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.36918 * 322.92151 * 26 13 11 46 46 H 1.08997 * 110.36910 * 85.14132 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 8 1.2061 1.9934 -2.0814 6 6 1.3326 2.4163 -3.4405 7 6 -0.0564 2.6906 -4.0206 8 8 -0.6495 3.7950 -3.3346 9 6 2.1388 -1.1672 0.0005 10 8 3.3505 -1.1684 0.0675 11 6 1.3935 -2.4604 -0.0753 12 8 0.1807 -2.4650 -0.0352 13 7 2.0683 -3.6216 -0.1880 14 6 3.5306 -3.7599 -0.2539 15 6 3.8441 -5.2680 -0.3493 16 6 2.5650 -5.9283 0.2295 17 8 2.6066 -5.9607 1.6576 18 6 2.3683 -7.3122 -0.3337 19 1 3.1278 -7.7521 -0.9632 20 6 1.2188 -8.0170 -0.0454 21 7 0.2939 -7.4813 0.7208 22 14 0.9754 -9.7326 -0.7430 23 1 1.5299 -10.7346 0.2024 24 1 -0.4746 -9.9862 -0.9387 25 1 1.6774 -9.8410 -2.0471 26 6 1.4623 -4.9629 -0.2716 27 1 -0.3633 -0.1074 1.0220 28 1 -0.3632 0.9388 -0.4181 29 1 -0.3634 -0.8314 -0.6041 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1383 0.5139 32 1 3.0734 2.6062 -1.4438 33 1 2.9643 0.9130 -1.9815 34 1 1.9302 3.3269 -3.4837 35 1 1.8208 1.6334 -4.0208 36 1 0.0329 2.9270 -5.0809 37 1 -0.6828 1.8072 -3.8967 38 1 -1.5336 4.0258 -3.6512 39 1 3.9125 -3.2435 -1.1346 40 1 3.9831 -3.3454 0.6468 41 1 4.7159 -5.5220 0.2538 42 1 3.9936 -5.5622 -1.3882 43 1 1.7892 -6.2749 2.0678 44 1 -0.5146 -7.9772 0.9240 45 1 0.5843 -5.0233 0.3714 46 1 1.1934 -5.1941 -1.3023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329452058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:55 Heat of formation + Delta-G solvation = -216.399277 kcal Electronic energy + Delta-G solvation = -29604.295942 eV Core-core repulsion = 25301.198379 eV Total energy + Delta-G solvation = -4303.097563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.96016 -40.20629 -39.18889 -38.88311 -37.51587 -36.75038 -35.82690 -34.24104 -31.94981 -31.88122 -29.91524 -29.62718 -28.09833 -27.25631 -25.57465 -24.17690 -23.41022 -22.42164 -21.50384 -20.27400 -19.13627 -18.62520 -18.34314 -18.20478 -17.66927 -17.40622 -17.12119 -16.99174 -16.51775 -16.25544 -16.09098 -15.70705 -15.34619 -15.01694 -14.83357 -14.67506 -14.62755 -14.17358 -13.94912 -13.81826 -13.54099 -13.52003 -13.29745 -13.18019 -12.93132 -12.83565 -12.67339 -12.57632 -12.39368 -12.25781 -12.11128 -12.06891 -11.90028 -11.20407 -10.98397 -10.70902 -10.65223 -10.43816 -10.24484 -9.92440 -9.55747 -8.24843 -6.41735 0.34124 1.24827 1.44181 1.46185 1.55477 2.08684 2.34670 2.43079 2.66814 3.01009 3.15441 3.39588 3.77231 3.96893 4.04245 4.05549 4.14756 4.18342 4.23038 4.31724 4.32587 4.41539 4.48075 4.54307 4.66224 4.66822 4.72589 4.73211 4.80101 4.82915 4.95041 5.03863 5.07348 5.19975 5.31828 5.36860 5.43508 5.74558 5.90083 6.05240 6.19830 6.31420 6.57907 6.67719 6.90184 6.92593 7.26820 7.34967 8.80785 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.002721 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.076845 B =10288.223429 C =10814.888478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.575 5.575 3 C 0.113 3.887 4 C 0.049 3.951 5 O -0.395 6.395 6 C 0.053 3.947 7 C 0.077 3.923 8 O -0.589 6.589 9 C 0.511 3.489 10 O -0.533 6.533 11 C 0.500 3.500 12 O -0.548 6.548 13 N -0.584 5.584 14 C 0.120 3.880 15 C -0.115 4.115 16 C 0.233 3.767 17 O -0.588 6.588 18 C -0.555 4.555 19 H 0.070 0.930 20 C 0.028 3.972 21 N -0.914 5.914 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.265 1.265 26 C 0.108 3.892 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.396 0.604 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.374 0.626 44 H 0.270 0.730 45 H 0.058 0.942 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 20.322 -8.132 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.307 5.307 3 C -0.008 4.008 4 C -0.029 4.029 5 O -0.315 6.315 6 C -0.023 4.023 7 C -0.001 4.001 8 O -0.398 6.398 9 C 0.293 3.707 10 O -0.411 6.411 11 C 0.284 3.716 12 O -0.428 6.428 13 N -0.316 5.316 14 C -0.002 4.002 15 C -0.153 4.153 16 C 0.193 3.807 17 O -0.396 6.396 18 C -0.593 4.593 19 H 0.088 0.912 20 C -0.174 4.174 21 N -0.553 5.553 22 Si 0.791 3.209 23 H -0.202 1.202 24 H -0.210 1.210 25 H -0.190 1.190 26 C -0.014 4.014 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.246 0.754 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.223 0.777 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.011 20.577 -7.687 22.058 hybrid contribution -1.394 -1.322 -0.502 1.986 sum 0.617 19.256 -8.189 20.934 Atomic orbital electron populations 1.22282 0.76841 1.04592 1.02709 1.47715 1.08921 1.04701 1.69394 1.21895 0.99185 0.83572 0.96169 1.22945 0.86521 1.00083 0.93309 1.87919 1.29800 1.87800 1.25998 1.22730 0.97482 0.99187 0.82921 1.22259 0.93028 0.89163 0.95608 1.86486 1.37228 1.51541 1.64535 1.19892 0.87201 0.85178 0.78444 1.90696 1.13574 1.87255 1.49585 1.20221 0.87277 0.85053 0.79078 1.90626 1.14135 1.86600 1.51489 1.48724 1.09601 1.06068 1.67226 1.22138 0.78537 0.97221 1.02322 1.22718 0.98250 0.92386 1.01915 1.19865 0.90223 0.91850 0.78806 1.86128 1.42389 1.89305 1.21736 1.21746 1.04556 1.00854 1.32123 0.91210 1.25818 0.95056 1.01977 0.94506 1.69823 1.09091 1.39167 1.37218 0.85438 0.77112 0.79391 0.78984 1.20216 1.21032 1.18957 1.23027 0.98888 0.79303 1.00196 0.92485 0.88972 0.89970 0.86966 0.87619 0.89636 0.94181 0.92026 0.91298 0.89686 0.93244 0.75407 0.89999 0.91251 0.89668 0.88945 0.77726 0.92052 0.92318 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 9.31 127.77 1.19 3.27 16 2 N -0.57 -16.04 2.84 -848.35 -2.41 -18.44 16 3 C 0.11 2.31 5.81 86.38 0.50 2.81 16 4 C 0.05 0.93 6.28 71.98 0.45 1.38 16 5 O -0.40 -8.45 9.25 -144.34 -1.33 -9.79 16 6 C 0.05 0.87 6.32 71.98 0.45 1.33 16 7 C 0.08 1.07 7.43 71.98 0.53 1.61 16 8 O -0.59 -9.44 13.62 -144.34 -1.97 -11.41 16 9 C 0.51 17.72 7.69 87.27 0.67 18.39 16 10 O -0.53 -19.10 13.72 -3.27 -0.04 -19.15 16 11 C 0.50 20.60 7.80 87.27 0.68 21.28 16 12 O -0.55 -24.24 13.40 -3.23 -0.04 -24.28 16 13 N -0.58 -25.19 3.33 -813.40 -2.71 -27.89 16 14 C 0.12 4.58 5.51 86.73 0.48 5.05 16 15 C -0.11 -4.61 6.13 31.78 0.19 -4.41 16 16 C 0.23 11.37 0.87 -10.16 -0.01 11.36 16 17 O -0.59 -30.58 13.16 -148.98 -1.96 -32.54 16 18 C -0.55 -28.62 8.27 25.60 0.21 -28.41 16 19 H 0.07 3.49 7.79 -2.91 -0.02 3.46 16 20 C 0.03 1.42 5.29 84.66 0.45 1.87 16 21 N -0.91 -48.95 10.69 21.45 0.23 -48.72 16 22 Si 0.97 41.21 29.54 68.60 2.03 43.24 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 C 0.11 5.26 5.38 86.85 0.47 5.73 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 2.09 7.24 -2.39 -0.02 2.07 16 29 H 0.08 2.66 5.36 -2.45 -0.01 2.65 16 30 H 0.11 1.83 8.07 -2.39 -0.02 1.81 16 31 H 0.11 2.12 7.37 -2.38 -0.02 2.11 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.40 2.68 9.12 -74.06 -0.68 2.00 16 39 H 0.08 2.79 7.84 -2.39 -0.02 2.77 16 40 H 0.07 2.70 7.44 -2.39 -0.02 2.68 16 41 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.09 3.39 8.03 -2.39 -0.02 3.37 16 43 H 0.37 20.10 7.56 -74.06 -0.56 19.54 16 44 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 45 H 0.06 3.22 7.33 -2.39 -0.02 3.20 16 46 H 0.06 2.77 8.03 -2.39 -0.02 2.75 16 Total: -1.00 -66.56 377.58 -2.15 -68.71 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.22 Total: 39.01 kcal Atomic # 6 Polarization: 34.98 SS G_CDS: 6.28 Total: 41.26 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -4.88 Total: -95.06 kcal Atomic # 8 Polarization: -91.81 SS G_CDS: -5.35 Total: -97.16 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -66.56 -2.15 -68.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329452058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.689 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds