Wall clock time and date at job start Tue Mar 31 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00270 * 2 1 4 4 C 1.52998 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47347 * 54.99407 * 4 3 2 6 6 C 1.52993 * 109.47278 * 175.00068 * 4 3 2 7 7 N 1.46501 * 109.47418 * 182.49244 * 6 4 3 8 8 C 1.34777 * 119.99976 * 173.99060 * 7 6 4 9 9 O 1.21351 * 120.00093 * 0.02562 * 8 7 6 10 10 C 1.49452 * 119.99885 * 180.02562 * 8 7 6 11 11 O 1.21349 * 119.99594 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99942 * 180.02562 * 10 8 7 13 13 C 1.47021 * 125.64853 * 0.02562 * 12 10 8 14 14 C 1.54334 * 107.39937 * 178.83563 * 13 12 10 15 15 C 1.55398 * 102.82672 * 337.97651 * 14 13 12 16 16 O 1.42903 * 110.89649 * 277.26675 * 15 14 13 17 17 C 1.50708 * 111.06706 * 153.48835 * 15 14 13 18 18 H 1.08005 * 119.99677 * 6.21123 * 17 15 14 19 19 C 1.37875 * 119.99964 * 186.21361 * 17 15 14 20 20 N 1.31515 * 120.00036 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00041 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47102 * 89.99737 * 21 19 17 23 23 H 1.48494 * 109.47434 * 209.99727 * 21 19 17 24 24 H 1.48502 * 109.47050 * 329.99996 * 21 19 17 25 25 C 1.47424 * 125.64787 * 179.97438 * 12 10 8 26 26 O 1.42904 * 109.46940 * 294.99595 * 4 3 2 27 27 C 1.42898 * 114.00162 * 120.08665 * 26 4 3 28 28 H 1.09001 * 109.47281 * 60.00151 * 1 2 3 29 29 H 1.08996 * 109.47559 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47634 * 300.00354 * 1 2 3 31 31 H 1.08998 * 109.47060 * 59.99611 * 3 2 1 32 32 H 1.08998 * 109.47018 * 299.99886 * 3 2 1 33 33 H 1.09001 * 109.47546 * 62.49103 * 6 4 3 34 34 H 1.09005 * 109.46692 * 302.49304 * 6 4 3 35 35 H 0.97000 * 119.99656 * 353.99277 * 7 6 4 36 36 H 1.08994 * 109.88610 * 298.32769 * 13 12 10 37 37 H 1.09002 * 109.88008 * 59.34853 * 13 12 10 38 38 H 1.08993 * 110.72032 * 96.25246 * 14 13 12 39 39 H 1.09006 * 110.71842 * 219.52648 * 14 13 12 40 40 H 0.96694 * 113.99685 * 173.68816 * 16 15 14 41 41 H 0.97000 * 119.99983 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.36264 * 322.99313 * 25 12 10 43 43 H 1.09002 * 110.37242 * 85.20591 * 25 12 10 44 44 H 1.08992 * 109.47598 * 173.90476 * 27 26 4 45 45 H 1.09008 * 109.46963 * 293.90731 * 27 26 4 46 46 H 1.09000 * 109.47242 * 53.90503 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5683 -0.8426 6 6 4.1573 2.5768 -0.1263 7 7 5.6161 2.4564 -0.1868 8 6 6.3731 3.5467 -0.4206 9 8 5.8464 4.6282 -0.5806 10 6 7.8613 3.4238 -0.4829 11 8 8.3879 2.3423 -0.3225 12 7 8.6183 4.5141 -0.7162 13 6 8.1134 5.8789 -0.9259 14 6 9.3371 6.7980 -1.1253 15 6 10.4859 5.9930 -0.4568 16 8 10.4968 6.1988 0.9573 17 6 11.8197 6.3483 -1.0617 18 1 11.8895 7.1499 -1.7823 19 6 12.9508 5.6502 -0.6953 20 7 12.8658 4.6746 0.1825 21 14 14.6042 6.0912 -1.4445 22 1 15.2692 7.1203 -0.6055 23 1 15.4579 4.8779 -1.5090 24 1 14.3999 6.6261 -2.8147 25 6 10.0899 4.5360 -0.8023 26 8 3.9658 0.5792 1.2202 27 6 4.6820 -0.6443 1.0414 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8780 3.1790 0.7382 34 1 3.7942 3.0561 -1.0355 35 1 6.0371 1.5920 -0.0586 36 1 7.4799 5.9077 -1.8123 37 1 7.5454 6.2021 -0.0536 38 1 9.5381 6.9478 -2.1860 39 1 9.1882 7.7531 -0.6213 40 1 11.1323 5.6446 1.4305 41 1 13.6617 4.1837 0.4405 42 1 10.5224 3.8438 -0.0799 43 1 10.4147 4.2821 -1.8114 44 1 5.0666 -0.9841 2.0029 45 1 4.0129 -1.4002 0.6300 46 1 5.5128 -0.4820 0.3547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349245427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:48 Heat of formation + Delta-G solvation = -199.951077 kcal Electronic energy + Delta-G solvation = -29033.489037 eV Core-core repulsion = 24731.104721 eV Total energy + Delta-G solvation = -4302.384315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42697 -39.26726 -38.34176 -37.45938 -37.17651 -34.99915 -34.09738 -32.25564 -31.57857 -30.22060 -27.99559 -27.64672 -26.75221 -26.05930 -25.20435 -23.44839 -22.08404 -21.57647 -19.81205 -19.47492 -17.54733 -17.47644 -17.15397 -17.00422 -16.47129 -16.00125 -15.85545 -15.58234 -15.28385 -15.15273 -14.90452 -14.57344 -14.43506 -14.23214 -13.95830 -13.29704 -13.05969 -12.94370 -12.86324 -12.61635 -12.51885 -12.29102 -12.09911 -11.66997 -11.56361 -11.51755 -11.30495 -11.12004 -11.05681 -10.80243 -10.58030 -10.47956 -10.21526 -10.14542 -9.93158 -9.38807 -9.28685 -9.16149 -8.71281 -8.41264 -7.91270 -6.30355 -4.39912 1.78113 2.52011 3.19790 3.25433 3.27741 3.30071 3.42063 3.59723 3.90184 4.25142 4.46895 4.59170 4.62126 4.72813 4.89546 4.95167 4.97341 5.01855 5.09536 5.19369 5.25548 5.26000 5.27460 5.48359 5.52443 5.57891 5.79041 5.82787 6.05506 6.13600 6.32506 6.50784 6.68934 6.72559 6.78800 6.83183 6.83937 7.14285 7.21023 7.30654 7.71528 7.84336 7.99981 8.03690 8.43326 8.64325 9.27603 9.36190 10.76841 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.029344 B = 0.002303 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.968527 B =12154.756475 C =12722.100667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.055 3.945 4 C 0.078 3.922 5 H 0.082 0.918 6 C 0.113 3.887 7 N -0.704 5.704 8 C 0.512 3.488 9 O -0.516 6.516 10 C 0.508 3.492 11 O -0.538 6.538 12 N -0.574 5.574 13 C 0.111 3.889 14 C -0.121 4.121 15 C 0.248 3.752 16 O -0.581 6.581 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.092 3.908 26 O -0.374 6.374 27 C 0.030 3.970 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.381 0.619 41 H 0.270 0.730 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.460 -8.132 -1.494 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.022 4.022 4 C 0.020 3.980 5 H 0.100 0.900 6 C -0.011 4.011 7 N -0.359 5.359 8 C 0.293 3.707 9 O -0.391 6.391 10 C 0.290 3.710 11 O -0.417 6.417 12 N -0.305 5.305 13 C -0.012 4.012 14 C -0.159 4.159 15 C 0.207 3.793 16 O -0.389 6.389 17 C -0.574 4.574 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.029 4.029 26 O -0.292 6.292 27 C -0.067 4.067 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.247 0.753 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.888 -7.752 -1.397 22.324 hybrid contribution 1.323 -0.648 -0.392 1.524 sum -19.565 -8.399 -1.789 21.367 Atomic orbital electron populations 1.22756 0.80684 1.02877 1.00117 1.87866 1.19939 1.27315 1.95473 1.22747 0.92438 0.85519 1.01533 1.22343 0.92671 0.94052 0.88979 0.90043 1.21609 0.79795 0.96125 1.03597 1.45559 1.06415 1.11749 1.72140 1.20424 0.88656 0.84234 0.77389 1.90728 1.74431 1.26402 1.47524 1.19509 0.86794 0.84427 0.80249 1.90722 1.73895 1.26290 1.50815 1.48663 1.09689 1.07439 1.64755 1.22146 0.96785 0.81112 1.01126 1.22753 0.93877 0.98344 1.00964 1.19697 0.92075 0.87523 0.79955 1.86134 1.64793 1.67650 1.20372 1.21460 0.91570 1.18573 1.25844 0.91371 1.25095 0.99763 0.94049 0.94403 1.69710 1.30376 1.21272 1.31850 0.86381 0.82748 0.78013 0.79639 1.20375 1.21030 1.19684 1.23490 0.74265 1.02941 1.02158 1.87959 1.74373 1.38313 1.28578 1.22917 0.95034 0.85930 1.02775 0.93991 0.89543 0.93866 0.91795 0.91723 0.90048 0.89479 0.75271 0.91754 0.91152 0.90342 0.90491 0.76944 0.91959 0.89077 0.91395 0.89342 0.93390 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.53 10.67 -40.08 -0.43 -3.95 16 3 C 0.06 0.43 5.60 37.16 0.21 0.64 16 4 C 0.08 0.72 2.60 -26.74 -0.07 0.65 16 5 H 0.08 0.69 7.60 -51.93 -0.39 0.30 16 6 C 0.11 1.17 5.36 -4.04 -0.02 1.15 16 7 N -0.70 -9.44 5.47 -60.73 -0.33 -9.77 16 8 C 0.51 8.71 7.86 -11.58 -0.09 8.62 16 9 O -0.52 -9.30 14.11 5.50 0.08 -9.23 16 10 C 0.51 10.27 7.91 -11.59 -0.09 10.17 16 11 O -0.54 -11.78 16.73 5.50 0.09 -11.69 16 12 N -0.57 -12.18 3.33 -171.03 -0.57 -12.75 16 13 C 0.11 2.14 5.48 -3.06 -0.02 2.13 16 14 C -0.12 -2.47 6.15 -24.76 -0.15 -2.62 16 15 C 0.25 5.98 0.87 -89.50 -0.08 5.90 16 16 O -0.58 -14.79 13.16 -35.23 -0.46 -15.25 16 17 C -0.54 -13.78 8.28 -34.44 -0.29 -14.06 16 18 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 19 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 20 N -0.89 -23.46 10.69 55.43 0.59 -22.87 16 21 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.09 2.19 5.39 -2.54 -0.01 2.17 16 26 O -0.37 -4.07 10.09 -40.08 -0.40 -4.48 16 27 C 0.03 0.27 10.59 101.05 1.07 1.34 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.82 8.12 -51.93 -0.42 0.39 16 35 H 0.41 5.31 6.89 -40.82 -0.28 5.03 16 36 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 37 H 0.07 1.38 7.57 -51.93 -0.39 0.98 16 38 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.38 9.86 7.56 45.56 0.34 10.21 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.09 2.39 7.33 -51.93 -0.38 2.01 16 43 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 46 H 0.04 0.37 7.32 -51.93 -0.38 -0.01 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -30.47 383.03 -5.70 -36.17 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -6.49 Total: 13.85 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 1.48 Total: 19.10 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.31 Total: -45.39 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.13 Total: -44.60 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.47 -5.70 -36.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349245427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.781 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds