Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00270 * 2 1 4 4 C 1.52998 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47347 * 54.99407 * 4 3 2 6 6 C 1.52993 * 109.47278 * 175.00068 * 4 3 2 7 7 N 1.46501 * 109.47418 * 182.49244 * 6 4 3 8 8 C 1.34777 * 119.99976 * 173.99060 * 7 6 4 9 9 O 1.21351 * 120.00093 * 0.02562 * 8 7 6 10 10 C 1.49452 * 119.99885 * 180.02562 * 8 7 6 11 11 O 1.21349 * 119.99594 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99942 * 180.02562 * 10 8 7 13 13 C 1.47021 * 125.64853 * 0.02562 * 12 10 8 14 14 C 1.54334 * 107.39937 * 178.83563 * 13 12 10 15 15 C 1.55398 * 102.82672 * 337.97651 * 14 13 12 16 16 O 1.42903 * 110.89649 * 277.26675 * 15 14 13 17 17 C 1.50708 * 111.06706 * 153.48835 * 15 14 13 18 18 H 1.08005 * 119.99677 * 6.21123 * 17 15 14 19 19 C 1.37875 * 119.99964 * 186.21361 * 17 15 14 20 20 N 1.31515 * 120.00036 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00041 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47102 * 89.99737 * 21 19 17 23 23 H 1.48494 * 109.47434 * 209.99727 * 21 19 17 24 24 H 1.48502 * 109.47050 * 329.99996 * 21 19 17 25 25 C 1.47424 * 125.64787 * 179.97438 * 12 10 8 26 26 O 1.42904 * 109.46940 * 294.99595 * 4 3 2 27 27 C 1.42898 * 114.00162 * 120.08665 * 26 4 3 28 28 H 1.09001 * 109.47281 * 60.00151 * 1 2 3 29 29 H 1.08996 * 109.47559 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47634 * 300.00354 * 1 2 3 31 31 H 1.08998 * 109.47060 * 59.99611 * 3 2 1 32 32 H 1.08998 * 109.47018 * 299.99886 * 3 2 1 33 33 H 1.09001 * 109.47546 * 62.49103 * 6 4 3 34 34 H 1.09005 * 109.46692 * 302.49304 * 6 4 3 35 35 H 0.97000 * 119.99656 * 353.99277 * 7 6 4 36 36 H 1.08994 * 109.88610 * 298.32769 * 13 12 10 37 37 H 1.09002 * 109.88008 * 59.34853 * 13 12 10 38 38 H 1.08993 * 110.72032 * 96.25246 * 14 13 12 39 39 H 1.09006 * 110.71842 * 219.52648 * 14 13 12 40 40 H 0.96694 * 113.99685 * 173.68816 * 16 15 14 41 41 H 0.97000 * 119.99983 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.36264 * 322.99313 * 25 12 10 43 43 H 1.09002 * 110.37242 * 85.20591 * 25 12 10 44 44 H 1.08992 * 109.47598 * 173.90476 * 27 26 4 45 45 H 1.09008 * 109.46963 * 293.90731 * 27 26 4 46 46 H 1.09000 * 109.47242 * 53.90503 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5683 -0.8426 6 6 4.1573 2.5768 -0.1263 7 7 5.6161 2.4564 -0.1868 8 6 6.3731 3.5467 -0.4206 9 8 5.8464 4.6282 -0.5806 10 6 7.8613 3.4238 -0.4829 11 8 8.3879 2.3423 -0.3225 12 7 8.6183 4.5141 -0.7162 13 6 8.1134 5.8789 -0.9259 14 6 9.3371 6.7980 -1.1253 15 6 10.4859 5.9930 -0.4568 16 8 10.4968 6.1988 0.9573 17 6 11.8197 6.3483 -1.0617 18 1 11.8895 7.1499 -1.7823 19 6 12.9508 5.6502 -0.6953 20 7 12.8658 4.6746 0.1825 21 14 14.6042 6.0912 -1.4445 22 1 15.2692 7.1203 -0.6055 23 1 15.4579 4.8779 -1.5090 24 1 14.3999 6.6261 -2.8147 25 6 10.0899 4.5360 -0.8023 26 8 3.9658 0.5792 1.2202 27 6 4.6820 -0.6443 1.0414 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8780 3.1790 0.7382 34 1 3.7942 3.0561 -1.0355 35 1 6.0371 1.5920 -0.0586 36 1 7.4799 5.9077 -1.8123 37 1 7.5454 6.2021 -0.0536 38 1 9.5381 6.9478 -2.1860 39 1 9.1882 7.7531 -0.6213 40 1 11.1323 5.6446 1.4305 41 1 13.6617 4.1837 0.4405 42 1 10.5224 3.8438 -0.0799 43 1 10.4147 4.2821 -1.8114 44 1 5.0666 -0.9841 2.0029 45 1 4.0129 -1.4002 0.6300 46 1 5.5128 -0.4820 0.3547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349245427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = -225.300002 kcal Electronic energy + Delta-G solvation = -29034.588248 eV Core-core repulsion = 24731.104721 eV Total energy + Delta-G solvation = -4303.483527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85762 -40.33040 -39.58276 -38.87278 -38.13821 -36.40248 -35.61637 -34.24078 -32.40176 -31.94697 -29.72247 -28.49939 -27.68890 -27.27049 -26.30685 -24.91192 -23.24008 -22.67708 -21.56193 -20.91649 -19.17399 -18.84612 -18.19707 -18.12396 -17.60097 -17.26264 -17.08652 -16.82020 -16.38747 -16.29117 -16.19256 -15.91702 -15.84640 -15.15330 -14.99463 -14.83978 -14.69494 -14.66569 -13.97063 -13.93691 -13.51882 -13.36088 -13.29902 -13.21010 -12.84563 -12.74728 -12.63476 -12.53731 -12.35812 -12.22515 -12.19779 -12.10050 -11.96381 -11.21780 -10.84703 -10.72012 -10.62565 -10.54238 -10.41393 -10.31998 -9.65143 -8.24975 -6.41781 0.31072 1.20039 1.44208 1.46306 1.55577 2.09124 2.34315 2.42565 2.62150 2.85372 3.01053 3.27520 3.76458 3.78116 3.92158 3.99491 4.06025 4.15110 4.32725 4.36156 4.40695 4.46779 4.48756 4.57401 4.57827 4.61528 4.65907 4.72949 4.77499 4.87117 4.89856 4.97401 5.06153 5.06268 5.15408 5.33561 5.43641 5.74576 5.90895 6.06072 6.11290 6.17770 6.34575 6.57157 6.67367 6.88217 7.26738 7.34967 8.80637 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.029344 B = 0.002303 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.968527 B =12154.756475 C =12722.100667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.056 3.944 4 C 0.080 3.920 5 H 0.089 0.911 6 C 0.112 3.888 7 N -0.688 5.688 8 C 0.519 3.481 9 O -0.525 6.525 10 C 0.501 3.499 11 O -0.562 6.562 12 N -0.582 5.582 13 C 0.118 3.882 14 C -0.115 4.115 15 C 0.232 3.768 16 O -0.588 6.588 17 C -0.554 4.554 18 H 0.070 0.930 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.965 3.035 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.265 1.265 25 C 0.106 3.894 26 O -0.394 6.394 27 C 0.027 3.973 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.374 0.626 41 H 0.270 0.730 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.991 -7.796 -2.502 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.021 4.021 4 C 0.022 3.978 5 H 0.107 0.893 6 C -0.011 4.011 7 N -0.342 5.342 8 C 0.299 3.701 9 O -0.402 6.402 10 C 0.284 3.716 11 O -0.442 6.442 12 N -0.314 5.314 13 C -0.004 4.004 14 C -0.153 4.153 15 C 0.191 3.809 16 O -0.396 6.396 17 C -0.592 4.592 18 H 0.089 0.911 19 C -0.174 4.174 20 N -0.554 5.554 21 Si 0.791 3.209 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.016 4.016 26 O -0.314 6.314 27 C -0.069 4.069 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.223 0.777 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.470 -7.424 -2.407 23.787 hybrid contribution 1.740 -0.825 -0.045 1.927 sum -20.730 -8.249 -2.452 22.445 Atomic orbital electron populations 1.22924 0.79217 1.03802 1.00988 1.87821 1.21608 1.27959 1.95672 1.22761 0.91298 0.85444 1.02638 1.22383 0.93630 0.93121 0.88681 0.89340 1.21844 0.77502 0.97302 1.04437 1.45562 1.07669 1.10776 1.70149 1.19733 0.87022 0.85024 0.78272 1.90724 1.73961 1.26791 1.48711 1.20202 0.88483 0.83714 0.79155 1.90700 1.74862 1.27119 1.51505 1.48704 1.08744 1.08637 1.65290 1.22174 0.96385 0.79728 1.02070 1.22768 0.92600 0.98407 1.01505 1.19938 0.93150 0.88470 0.79295 1.86127 1.64538 1.67563 1.21328 1.21754 0.92605 1.18744 1.26108 0.91140 1.25823 1.02874 0.93947 0.94784 1.69823 1.30995 1.21889 1.32665 0.85437 0.78844 0.77548 0.79092 1.20231 1.21082 1.18925 1.23056 0.76081 1.02047 1.00376 1.87930 1.74683 1.38999 1.29739 1.22998 0.95119 0.85593 1.03208 0.92686 0.88712 0.93399 0.91737 0.89549 0.90120 0.87711 0.74950 0.89490 0.91243 0.88825 0.89606 0.77735 0.92058 0.92368 0.92438 0.88909 0.92777 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.75 10.67 -144.34 -1.54 -8.29 16 3 C 0.06 0.76 5.60 71.98 0.40 1.16 16 4 C 0.08 1.32 2.60 30.59 0.08 1.40 16 5 H 0.09 1.33 7.60 -2.39 -0.02 1.31 16 6 C 0.11 2.09 5.36 86.38 0.46 2.55 16 7 N -0.69 -17.43 5.47 -464.41 -2.54 -19.97 16 8 C 0.52 17.00 7.86 87.27 0.69 17.69 16 9 O -0.53 -17.93 14.11 -3.25 -0.05 -17.97 16 10 C 0.50 20.15 7.91 87.27 0.69 20.84 16 11 O -0.56 -24.87 16.73 -3.24 -0.05 -24.93 16 12 N -0.58 -24.64 3.33 -813.40 -2.71 -27.34 16 13 C 0.12 4.41 5.48 86.73 0.48 4.88 16 14 C -0.12 -4.53 6.15 31.87 0.20 -4.34 16 15 C 0.23 11.22 0.87 -10.07 -0.01 11.21 16 16 O -0.59 -30.35 13.16 -148.98 -1.96 -32.31 16 17 C -0.55 -28.45 8.28 25.60 0.21 -28.24 16 18 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 19 C 0.03 1.38 5.29 84.65 0.45 1.83 16 20 N -0.91 -48.94 10.69 21.45 0.23 -48.71 16 21 Si 0.97 41.17 29.54 68.60 2.03 43.20 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 25 C 0.11 5.15 5.39 86.85 0.47 5.62 16 26 O -0.39 -8.12 10.09 -144.34 -1.46 -9.58 16 27 C 0.03 0.46 10.59 113.37 1.20 1.66 16 28 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.42 8.14 -2.38 -0.02 0.41 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.10 1.65 8.12 -2.38 -0.02 1.63 16 35 H 0.41 10.23 6.89 -92.71 -0.64 9.59 16 36 H 0.09 2.86 7.69 -2.39 -0.02 2.85 16 37 H 0.07 2.61 7.57 -2.39 -0.02 2.59 16 38 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 39 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.37 19.99 7.56 -74.06 -0.56 19.43 16 41 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 42 H 0.06 3.18 7.33 -2.39 -0.02 3.16 16 43 H 0.06 2.84 8.03 -2.39 -0.02 2.82 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.05 0.74 7.32 -2.39 -0.02 0.72 16 Total: -1.00 -64.83 383.03 -1.68 -66.52 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -0.19 Total: 41.61 kcal Atomic # 6 Polarization: 31.22 SS G_CDS: 6.56 Total: 37.78 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -5.02 Total: -96.02 kcal Atomic # 8 Polarization: -88.03 SS G_CDS: -5.06 Total: -93.09 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -64.83 -1.68 -66.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349245427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.785 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds